PI0009917 (gene) Melon (PI 482460) v1

Overview


Name	PI0009917
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr08: 12663041 .. 12663987 (+)
RNA-Seq Expression	PI0009917
Synteny	PI0009917

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCTGCCCTGACACCCTCTTTTGGCGCCAGGGAGAGAGGGGGCGCTCCGGGAGAAGGTGTGACAGTTTGGTATCAGACCAATTCGTTCTTTGGAAGTAGAAGAGTAAAGTAAGTTCCTTGGTTACTTAAGAGTAAGTTTAGAGTGGAATAAAGACTAAAGAGTTCAGTCTAGGATAAGAGTCTTAGGTTTTACCTAAGAGAGTTAAGAAAATAAGTTAAAGGGTTAAGATAAGAGTAAGCTGAATCAGAGTTAGAGTTTGAGCTAAAGTTTAAGAGTTAAAGAAGTTCAATTAAAGAGTTAAAGTATCATGCATATAGTTAGAGAAGTCTATAGCATATATAAGGTATCGATATGTTGTAGGAGTTACAATTATGCCTAACAATACCAGAAAGCGTTATGCCTCACCATAGCAGAAAGCGTAGGCAGAAGCAAAAAAGGCTCATGATCCTAGCACAGGAAGGGAAGAGGAATAACTACCTAAGGCGGAGTCAAGTGCCTCTCAGCAGAAGCTGGAGTGGAAGAAAATTTTTTCCATCAGATAGCACAAAAGTTAGTAGAATCCTTAGTTCAGTTTAAGCAAAGTTTGAGAAAAAAACATAATATAGAGAGGTTAAAGCTTTGGGTGCTACAGTGTTTAAAGGTTCAACTAATCTAACTGATGTTGAGGCATGGTTGAATCTGCTACTGAAGTGTTTCAAGGTGATGGACTATCCGGATGAGCGGATGGTTTAGCAACTTTTCTACTTCAGAAGGTGGCAGAAGGATGGAGGAAGTCGATTAAGGCTCGACGAGGAGATACTGACGCCATGGACGGGGAAACCTTTAGGAGTGTGTTTCATGATAAGTACTTCCTTGGTACTTATTGTGAAGCTAAGAGAGATGAGTTCCTAAATGCAATGCATGACTACGCCATTTTGATCGAGGTATGGATCGAGCAGTGA

mRNA sequence

ATGTCAGCTGCCCTGACACCCTCTTTTGGCGCCAGGGAGAGAGGGGGCGCTCCGGGAGAAGGTGTGACAGTTTGGTATCAGACCAATTCGTTCTTTGGAAGTAGAAGAGTAAAAAAGCGTAGGCAGAAGCAAAAAAGGCTCATGATCCTAGCACAGGAAGGGAAGAGGAATAACTACCTAAGGCGGAGTCAAGTGCCTCTCAGCAGAAGCTGGAGTGGAAGAAAATTTTTTCCATCAGATAGCACAAAAAAGGTGGCAGAAGGATGGAGGAAGTCGATTAAGGCTCGACGAGGAGATACTGACGCCATGGACGGGGAAACCTTTAGGAGTGTGTTTCATGATAAGTACTTCCTTGGTACTTATTGTGAAGCTAAGAGAGATGAGTTCCTAAATGCAATGCATGACTACGCCATTTTGATCGAGGTATGGATCGAGCAGTGA

Coding sequence (CDS)

ATGTCAGCTGCCCTGACACCCTCTTTTGGCGCCAGGGAGAGAGGGGGCGCTCCGGGAGAAGGTGTGACAGTTTGGTATCAGACCAATTCGTTCTTTGGAAGTAGAAGAGTAAAAAAGCGTAGGCAGAAGCAAAAAAGGCTCATGATCCTAGCACAGGAAGGGAAGAGGAATAACTACCTAAGGCGGAGTCAAGTGCCTCTCAGCAGAAGCTGGAGTGGAAGAAAATTTTTTCCATCAGATAGCACAAAAAAGGTGGCAGAAGGATGGAGGAAGTCGATTAAGGCTCGACGAGGAGATACTGACGCCATGGACGGGGAAACCTTTAGGAGTGTGTTTCATGATAAGTACTTCCTTGGTACTTATTGTGAAGCTAAGAGAGATGAGTTCCTAAATGCAATGCATGACTACGCCATTTTGATCGAGGTATGGATCGAGCAGTGA

Protein sequence

MSAALTPSFGARERGGAPGEGVTVWYQTNSFFGSRRVKKRRQKQKRLMILAQEGKRNNYLRRSQVPLSRSWSGRKFFPSDSTKKVAEGWRKSIKARRGDTDAMDGETFRSVFHDKYFLGTYCEAKRDEFLNAMHDYAILIEVWIEQ

Homology

[Close]

BLAST of PI0009917 vs. ExPASy TrEMBL
Match: A0A5A7SPH3 (Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G003020 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.0e-09
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 83  KKVAEGWRKSIKARRGDTDAMDGETFRSVFHDKYFLGTYCEAKRDEFLNAMHDYAILIE 142
           +K AEGW KSI ARR D  A+D +TFR +F DKY+  TYCEAKRDEFL        ++E
Sbjct: 116 QKEAEGWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVVE 174

[Close]

BLAST of PI0009917 vs. ExPASy TrEMBL
Match: A0A5A7U1N9 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001280 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.0e-09
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 83  KKVAEGWRKSIKARRGDTDAMDGETFRSVFHDKYFLGTYCEAKRDEFLNAMHDYAILIE 142
           +K AEGW KSI ARR D  A+D +TFR +F DKY+  TYCEAKRDEFL        ++E
Sbjct: 95  QKEAEGWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVVE 153

[Close]

BLAST of PI0009917 vs. ExPASy TrEMBL
Match: A0A5A7UFH6 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00370 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.0e-09
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 83  KKVAEGWRKSIKARRGDTDAMDGETFRSVFHDKYFLGTYCEAKRDEFLNAMHDYAILIE 142
           +K AEGW KSI ARR D  A+D +TFR +F DKY+  TYCEAKRDEFL       ++ E
Sbjct: 116 QKEAEGWWKSILARRSDAHALDWKTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLLVAE 174

[Close]

BLAST of PI0009917 vs. ExPASy TrEMBL
Match: A0A5A7TA17 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G003160 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.0e-09
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 83  KKVAEGWRKSIKARRGDTDAMDGETFRSVFHDKYFLGTYCEAKRDEFLNAMHDYAILIE 142
           +K AEGW KSI ARR D  A+D +TFR +F DKY+  TYCEAKRDEFL        ++E
Sbjct: 144 QKEAEGWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVVE 202

[Close]

BLAST of PI0009917 vs. ExPASy TrEMBL
Match: A0A5D3DSB4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00380 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.0e-09
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 83  KKVAEGWRKSIKARRGDTDAMDGETFRSVFHDKYFLGTYCEAKRDEFLNAMHDYAILIE 142
           +K AEGW KSI ARR D  A+D +TFR +F DKY+  TYCEAKRDEFL        ++E
Sbjct: 25  QKEAEGWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVVE 83

[Close]

BLAST of PI0009917 vs. NCBI nr
Match: KAA0038417.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-09
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 83  KKVAEGWRKSIKARRGDTDAMDGETFRSVFHDKYFLGTYCEAKRDEFLNAMHDYAILIE 142
           +K AEGW KSI ARR D  A+D +TFR +F DKY+  TYCEAKRDEFL        ++E
Sbjct: 144 QKEAEGWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVVE 202

[Close]

BLAST of PI0009917 vs. NCBI nr
Match: KAA0047501.1 (hypothetical protein E6C27_scaffold498G001280 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-09
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 83  KKVAEGWRKSIKARRGDTDAMDGETFRSVFHDKYFLGTYCEAKRDEFLNAMHDYAILIE 142
           +K AEGW KSI ARR D  A+D +TFR +F DKY+  TYCEAKRDEFL        ++E
Sbjct: 95  QKEAEGWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVVE 153

[Close]

BLAST of PI0009917 vs. NCBI nr
Match: TYK26473.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-09
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 83  KKVAEGWRKSIKARRGDTDAMDGETFRSVFHDKYFLGTYCEAKRDEFLNAMHDYAILIE 142
           +K AEGW KSI ARR D  A+D +TFR +F DKY+  TYCEAKRDEFL        ++E
Sbjct: 25  QKEAEGWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVVE 83

[Close]

BLAST of PI0009917 vs. NCBI nr
Match: KAA0053247.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-09
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 83  KKVAEGWRKSIKARRGDTDAMDGETFRSVFHDKYFLGTYCEAKRDEFLNAMHDYAILIE 142
           +K AEGW KSI ARR D  A+D +TFR +F DKY+  TYCEAKRDEFL       ++ E
Sbjct: 116 QKEAEGWWKSILARRSDAHALDWKTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLLVAE 174

[Close]

BLAST of PI0009917 vs. NCBI nr
Match: KAA0026295.1 (putative Gag-pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.2e-09
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 83  KKVAEGWRKSIKARRGDTDAMDGETFRSVFHDKYFLGTYCEAKRDEFLNAMHDYAILIE 142
           +K AEGW KSI ARR D  A+D +TFR +F DKY+  TYCEAKRDEFL        ++E
Sbjct: 116 QKEAEGWWKSILARRSDARALDWQTFRGIFEDKYYPSTYCEAKRDEFLGLKQGSLSVVE 174

The following BLAST results are available for this feature:

BLAST of PI0009917 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009917 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SPH3	3.0e-09	55.93	Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7U1N9	3.0e-09	55.93	Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7UFH6	3.0e-09	55.93	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7TA17	3.0e-09	55.93	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3DSB4	3.0e-09	55.93	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of PI0009917 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038417.1	6.2e-09	55.93	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047501.1	6.2e-09	55.93	hypothetical protein E6C27_scaffold498G001280 [Cucumis melo var. makuwa]	[more]
TYK26473.1	6.2e-09	55.93	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0053247.1	6.2e-09	55.93	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0026295.1	6.2e-09	55.93	putative Gag-pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0009917 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009917.1	PI0009917.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0003824	catalytic activity