PI0009884 (gene) Melon (PI 482460) v1

Overview


Name	PI0009884
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Location	chr08: 8936946 .. 8938220 (+)
RNA-Seq Expression	PI0009884
Synteny	PI0009884

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCCCCATCACAACCCAAACTATCCAAGAATCGAGGAAGTAACCTGGATGATAAACAGATTCGTTTGGTTGAAGTAACGACCCATACGCTCCAAAAGGAGGTCAAGGAACACAGAGATGAAAGTGATAGTAGCAGAAGCGATCGTCATTAGAAGAGACCTTCGAAGAAAACTAAGGCATCACATGATGATTCCTATGGAGATGAGTGAGTGCTCTGAAAATTCTTAAAGTTACAACACCCCTGGTTTGTATATTTTCCCTATTTTTTATTATTTTTCTTTTGGTGGATAATTTATTTATTTATTTATTTCCGTAGTCACCTTTGGATGATCATCTTCAAGGACTTGTAGAGCCATATAGTGGTGAATCTTTGACAGAGCCTCATGTTGTGGATTCGGCCTTTGAAGAGGTTGGTATTTCAAGATCACCAGCAGCCAGACCAGCTGAACAATCTTTACGGCCCCTTGCTCTTCTCAAGGAGATTCGGCGTGACAAGATGAAAGTGAATCCTTAATTCAAAGGAGACATCTGCCCCAAAGTGCCATTAGAGAAGATCATATCCACACATGCGCCTCTCAAGATTTCTAAGCCGCCTTTAAACAATTCCAAGAAGTAGATGATCGGACACCCTGAGCCTTTTCAGTGGGTTGGTGAAAAAATAGTTTCAAACTTTTTTCAGAAGATAACCTTATGCATGTGGGAGGACATTCAAGACAAGATCATGCACACTCCTTTTGAATATATCCCAAGACTTAAACCGAAAATAACGACAGTACTTTCGAGAATTTCAAAGATCTATGCAAACAACCTGATTTCTCTTGAAGAATTTTTTAATAGCTACCTTAAAAGGGTAGACAATTTCAATGCGATACAATCTTCGTATACTGCATAACTGTCATCGGCAGACAAAGGTCATCAATTAGACGAGAAGACATCTGCTATGAAAGAAGCCTTGGCTTTGATGAACCAACTACAAGAAGACGCCAAAGCTATTCAAGAGAGGGCTGCACAATTATCTTTGGAAAAAAAAGGAATTGGAAAGCAAACTTCAAAGTATAAATACTGAGTCTAAGCATTTGTCGATCTTATCTTGTGAGAAGAATTATGTCATAGACAAGAAAGAACTGGAAGTTGCCAAGATCCAGGAAGAAGTCAACACTCTTGAAAACACCTCTGCTATCATTTATGAAGTCATCGAGGCTCTAGCTACAGTTCGTAAGAGTATGGAGGTTGCACGTGAAGAATTTAAGAACTTCAAGTGGAAGCTTTGA

mRNA sequence

ATGCCTCCCCCATCACAACCCAAACTATCCAAGAATCGAGGAAGTAACCTGGATGATAAACAGATTCGTTTGGTTGAAGTAACGACCCATACGCTCCAAAAGGAGTCACCTTTGGATGATCATCTTCAAGGACTTGTAGAGCCATATAGTGGTGAATCTTTGACAGAGCCTCATGTTGTGGATTCGGCCTTTGAAGAGGTTGGTATTTCAAGATCACCAGCAGCCAGACCAGCTGAACAATCTTTACGGCCCCTTGCTCTTCTCAAGGAGATTCGGCGTGACAAGATGAAAAATTATGTCATAGACAAGAAAGAACTGGAAGTTGCCAAGATCCAGGAAGAAGTCAACACTCTTGAAAACACCTCTGCTATCATTTATGAAGTCATCGAGGCTCTAGCTACAGTTCGTAAGAGTATGGAGGTTGCACGTGAAGAATTTAAGAACTTCAAGTGGAAGCTTTGA

Coding sequence (CDS)

ATGCCTCCCCCATCACAACCCAAACTATCCAAGAATCGAGGAAGTAACCTGGATGATAAACAGATTCGTTTGGTTGAAGTAACGACCCATACGCTCCAAAAGGAGTCACCTTTGGATGATCATCTTCAAGGACTTGTAGAGCCATATAGTGGTGAATCTTTGACAGAGCCTCATGTTGTGGATTCGGCCTTTGAAGAGGTTGGTATTTCAAGATCACCAGCAGCCAGACCAGCTGAACAATCTTTACGGCCCCTTGCTCTTCTCAAGGAGATTCGGCGTGACAAGATGAAAAATTATGTCATAGACAAGAAAGAACTGGAAGTTGCCAAGATCCAGGAAGAAGTCAACACTCTTGAAAACACCTCTGCTATCATTTATGAAGTCATCGAGGCTCTAGCTACAGTTCGTAAGAGTATGGAGGTTGCACGTGAAGAATTTAAGAACTTCAAGTGGAAGCTTTGA

Protein sequence

MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKESPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSPAARPAEQSLRPLALLKEIRRDKMKNYVIDKKELEVAKIQEEVNTLENTSAIIYEVIEALATVRKSMEVAREEFKNFKWKL

Homology

[Close]

BLAST of PI0009884 vs. ExPASy TrEMBL
Match: A0A5A7UVX0 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00390 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 7.7e-32
Identity = 105/273 (38.46%), Postives = 123/273 (45.05%), Query Frame = 0


Query: 1   MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE------------------------- 60
           +PPPSQP+L KNRGSNL  K+IRLVE     L++E                         
Sbjct: 237 IPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVNEHKDESDSSKSDRHWKRPLKKAK 296

Query: 61  ----------------------SPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSP 120
                                 SPL+DHL+GL+   S ESL  PH VDSAFEEVG S++P
Sbjct: 297 VSGDNPDGRGLSALIVPDVPPLSPLNDHLEGLIALDSDESLMGPHAVDSAFEEVGTSKTP 356

Query: 121 AARPAEQSLRPLALLKEIRRDKM------------------------------------- 154
             +P EQSLRP ALL+EIRR KM                                     
Sbjct: 357 VNKPTEQSLRPSALLEEIRRGKMIVGGKDLESPSSKEGACPKSSLQKVSSAHAPLKFYEL 416

[Close]

BLAST of PI0009884 vs. ExPASy TrEMBL
Match: A0A5A7TIV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002340 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 8.2e-26
Identity = 85/206 (41.26%), Postives = 109/206 (52.91%), Query Frame = 0


Query: 15  SNLDDKQIRLVEVTTHTLQKESPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSPA 74
           SNL+++     + +  + + +SPL++HL+GL+EP S ESLT PH VDSAFEEVG S++  
Sbjct: 400 SNLEEEVKEHKDESDSSKRYQSPLNNHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTLV 459

Query: 75  ARPAEQSLRPLALLKEIRRDKMK------------------------------------- 134
            + AEQSLRP  LL+EIRR KM                                      
Sbjct: 460 NKLAEQSLRPSTLLEEIRRGKMTVGGKDLESPSSKEGICPKASLQKVSSAHAPLSELPLS 519

Query: 135 ------------------------------NYVIDKKELEVAKIQEEVNTLENTSAIIYE 154
                                         +  ID++ELEVAK+Q+EVNTLE+T AI  E
Sbjct: 520 ASNKQTTRNPEPSQWIGEKVVSNLFQKTALSEAIDQQELEVAKLQDEVNTLESTHAITEE 579

[Close]

BLAST of PI0009884 vs. ExPASy TrEMBL
Match: A0A5A7U349 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00590 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.5e-24
Identity = 105/340 (30.88%), Postives = 125/340 (36.76%), Query Frame = 0


Query: 1   MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE------------------------- 60
           +PPPSQP+L KNRGSNL  K+IRLVE     L++E                         
Sbjct: 326 IPPPSQPRLLKNRGSNLGGKEIRLVEAMAPNLEEEVKEHESDSSKSDRHWKRPLKKAKVS 385

Query: 61  --------------------SPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSPAA 120
                               SPL+DHL+GL+EP S ESLT PH VDSAFEEVG S++P  
Sbjct: 386 GDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPESDESLTGPHAVDSAFEEVGTSKTPVN 445

Query: 121 RPAEQSLRPLALLKEIRRDKM--------------------------------------- 154
           +P EQSLRP ALL+EIRR KM                                       
Sbjct: 446 KPTEQSLRPSALLEEIRRGKMTVGGKDLEIPSSKEGACPKASLQKWVGEKVVSNFFQKTA 505

[Close]

BLAST of PI0009884 vs. ExPASy TrEMBL
Match: A0A5D3C961 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001590 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.7e-24
Identity = 101/306 (33.01%), Postives = 119/306 (38.89%), Query Frame = 0


Query: 1   MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE------------------------- 60
           +PPPSQ KL KNRG+NL  K+IR VE    TL++E                         
Sbjct: 5   IPPPSQSKLPKNRGNNLSGKEIRSVEAMAATLEEEIKEHKDESDSSKSDHHWKRPLKKAK 64

Query: 61  ----------------------SPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSP 120
                                 SPL+DHL+GL+E  S ESL  PH VDS  EEVG S++P
Sbjct: 65  VSGDDPDGKSSSALGVPDVPSLSPLNDHLEGLIELDSNESLMGPHEVDSTIEEVGTSKTP 124

Query: 121 AARPAEQSLRPLALLKEIRRDKM------------------------------------- 154
            ++P EQSLRP ALL+EI R KM                                     
Sbjct: 125 VSKPVEQSLRPSALLEEIHRGKMTVGEKDIGSPPSKGDACPKTPLQKDIQDKIMQTPFEY 184

[Close]

BLAST of PI0009884 vs. ExPASy TrEMBL
Match: A0A5A7U8L3 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001600 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 105/335 (31.34%), Postives = 126/335 (37.61%), Query Frame = 0


Query: 1   MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE------------------------- 60
           +P PSQP+L KNRGSNL  K+IRLVE     L++E                         
Sbjct: 578 IPSPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESNNSKSDRHWKRPLKKAK 637

Query: 61  ----------------------SPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSP 120
                                 SPL+DHL+GL+EP S +SLT PH VDSAFEEVG S++ 
Sbjct: 638 VSGDHPNGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDKSLTGPHAVDSAFEEVGTSKTL 697

Query: 121 AARPAEQSLRPLALLKEIRRDKM------------------------------KNY---- 154
             +PAEQSL P ALL+EIRR KM                               N+    
Sbjct: 698 VNKPAEQSLHPSALLEEIRRGKMTVGEKTLRALHPKKTARSPEPSQWVGEKVVSNFFQKT 757

[Close]

BLAST of PI0009884 vs. NCBI nr
Match: KAA0057699.1 (hypothetical protein E6C27_scaffold126G00510 [Cucumis melo var. makuwa] >TYK27485.1 hypothetical protein E5676_scaffold970G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-31
Identity = 105/273 (38.46%), Postives = 123/273 (45.05%), Query Frame = 0


Query: 1   MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE------------------------- 60
           +PPPSQP+L KNRGSNL  K+IRLVE     L++E                         
Sbjct: 237 IPPPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVNEHKDESDSSKSDRHWKRPLKKAK 296

Query: 61  ----------------------SPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSP 120
                                 SPL+DHL+GL+   S ESL  PH VDSAFEEVG S++P
Sbjct: 297 VSGDNPDGRGLSALIVPDVPPLSPLNDHLEGLIALDSDESLMGPHAVDSAFEEVGTSKTP 356

Query: 121 AARPAEQSLRPLALLKEIRRDKM------------------------------------- 154
             +P EQSLRP ALL+EIRR KM                                     
Sbjct: 357 VNKPTEQSLRPSALLEEIRRGKMIVGGKDLESPSSKEGACPKSSLQKVSSAHAPLKFYEL 416

[Close]

BLAST of PI0009884 vs. NCBI nr
Match: KAA0043323.1 (hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa])

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-25
Identity = 85/206 (41.26%), Postives = 109/206 (52.91%), Query Frame = 0


Query: 15  SNLDDKQIRLVEVTTHTLQKESPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSPA 74
           SNL+++     + +  + + +SPL++HL+GL+EP S ESLT PH VDSAFEEVG S++  
Sbjct: 400 SNLEEEVKEHKDESDSSKRYQSPLNNHLEGLIEPDSDESLTGPHAVDSAFEEVGTSKTLV 459

Query: 75  ARPAEQSLRPLALLKEIRRDKMK------------------------------------- 134
            + AEQSLRP  LL+EIRR KM                                      
Sbjct: 460 NKLAEQSLRPSTLLEEIRRGKMTVGGKDLESPSSKEGICPKASLQKVSSAHAPLSELPLS 519

Query: 135 ------------------------------NYVIDKKELEVAKIQEEVNTLENTSAIIYE 154
                                         +  ID++ELEVAK+Q+EVNTLE+T AI  E
Sbjct: 520 ASNKQTTRNPEPSQWIGEKVVSNLFQKTALSEAIDQQELEVAKLQDEVNTLESTHAITEE 579

[Close]

BLAST of PI0009884 vs. NCBI nr
Match: KAA0050333.1 (hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 9.3e-24
Identity = 105/340 (30.88%), Postives = 125/340 (36.76%), Query Frame = 0


Query: 1   MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE------------------------- 60
           +PPPSQP+L KNRGSNL  K+IRLVE     L++E                         
Sbjct: 326 IPPPSQPRLLKNRGSNLGGKEIRLVEAMAPNLEEEVKEHESDSSKSDRHWKRPLKKAKVS 385

Query: 61  --------------------SPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSPAA 120
                               SPL+DHL+GL+EP S ESLT PH VDSAFEEVG S++P  
Sbjct: 386 GDHPDGRGLSALEVPDVPPLSPLNDHLEGLIEPESDESLTGPHAVDSAFEEVGTSKTPVN 445

Query: 121 RPAEQSLRPLALLKEIRRDKM--------------------------------------- 154
           +P EQSLRP ALL+EIRR KM                                       
Sbjct: 446 KPTEQSLRPSALLEEIRRGKMTVGGKDLEIPSSKEGACPKASLQKWVGEKVVSNFFQKTA 505

[Close]

BLAST of PI0009884 vs. NCBI nr
Match: KAA0048242.1 (hypothetical protein E6C27_scaffold63G001580 [Cucumis melo var. makuwa] >TYK08015.1 hypothetical protein E5676_scaffold265G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-23
Identity = 101/306 (33.01%), Postives = 119/306 (38.89%), Query Frame = 0


Query: 1   MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE------------------------- 60
           +PPPSQ KL KNRG+NL  K+IR VE    TL++E                         
Sbjct: 5   IPPPSQSKLPKNRGNNLSGKEIRSVEAMAATLEEEIKEHKDESDSSKSDHHWKRPLKKAK 64

Query: 61  ----------------------SPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSP 120
                                 SPL+DHL+GL+E  S ESL  PH VDS  EEVG S++P
Sbjct: 65  VSGDDPDGKSSSALGVPDVPSLSPLNDHLEGLIELDSNESLMGPHEVDSTIEEVGTSKTP 124

Query: 121 AARPAEQSLRPLALLKEIRRDKM------------------------------------- 154
            ++P EQSLRP ALL+EI R KM                                     
Sbjct: 125 VSKPVEQSLRPSALLEEIHRGKMTVGEKDIGSPPSKGDACPKTPLQKDIQDKIMQTPFEY 184

[Close]

BLAST of PI0009884 vs. NCBI nr
Match: KAA0050516.1 (hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 3.5e-23
Identity = 105/335 (31.34%), Postives = 126/335 (37.61%), Query Frame = 0


Query: 1   MPPPSQPKLSKNRGSNLDDKQIRLVEVTTHTLQKE------------------------- 60
           +P PSQP+L KNRGSNL  K+IRLVE     L++E                         
Sbjct: 578 IPSPSQPRLPKNRGSNLGGKEIRLVEAMAPNLEEEVKEHKDESNNSKSDRHWKRPLKKAK 637

Query: 61  ----------------------SPLDDHLQGLVEPYSGESLTEPHVVDSAFEEVGISRSP 120
                                 SPL+DHL+GL+EP S +SLT PH VDSAFEEVG S++ 
Sbjct: 638 VSGDHPNGRGLSALEVPDVPPLSPLNDHLEGLIEPDSDKSLTGPHAVDSAFEEVGTSKTL 697

Query: 121 AARPAEQSLRPLALLKEIRRDKM------------------------------KNY---- 154
             +PAEQSL P ALL+EIRR KM                               N+    
Sbjct: 698 VNKPAEQSLHPSALLEEIRRGKMTVGEKTLRALHPKKTARSPEPSQWVGEKVVSNFFQKT 757

The following BLAST results are available for this feature:

BLAST of PI0009884 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009884 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UVX0	7.7e-32	38.46	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7TIV2	8.2e-26	41.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U349	4.5e-24	30.88	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3C961	7.7e-24	33.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U8L3	1.7e-23	31.34	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of PI0009884 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057699.1	1.6e-31	38.46	hypothetical protein E6C27_scaffold126G00510 [Cucumis melo var. makuwa] >TYK2748...	[more]
KAA0043323.1	1.7e-25	41.26	hypothetical protein E6C27_scaffold110G002340 [Cucumis melo var. makuwa]	[more]
KAA0050333.1	9.3e-24	30.88	hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa]	[more]
KAA0048242.1	1.6e-23	33.01	hypothetical protein E6C27_scaffold63G001580 [Cucumis melo var. makuwa] >TYK0801...	[more]
KAA0050516.1	3.5e-23	31.34	hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]	[more]

BLAST of PI0009884 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009884.1	PI0009884.1	mRNA