PI0009837 (gene) Melon (PI 482460) v1

Overview


Name	PI0009837
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	AWS domain-containing protein
Location	chr01: 4134813 .. 4137528 (-)
RNA-Seq Expression	PI0009837
Synteny	PI0009837

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGATCACTTTCATTGGAAAAAAAAATGAAAGAATATAAGAGCATACAAAAAAAAATCCATCAAAACATCTTCTAAAGGAAGGGATTCTAACTAAGTAATATGTTACCTAGAGAATAATTAGAAAAAGATTTCGAGCTTAAAGTGACGCATGATGCATGAAACCTCACCAAGGACCAAGCCTCACAGGGTCCCTATCCCAACCTCCAAACACTCTATTGTTCATTTCCCCTCAAATATCTCATAACATAGCTCATGTCCTAGCTAACCACAAGAAAGGACCACCCTATATCCCTTGGGCCAACAATTTGAACATCAAACTCCTATAGGAAGCAGCTCAACACAGTCCTCCACAACAATGCTGGCAATCCCAAAGGAGATGATCCATATCTTCCTCTGCCTTTAGACAAAGAATATAGCAGAAGGGCTCCATTAACGAGGTCATCTTCCAAGGCCTATCTATAGTGTTTGCCCAACCAAGCAAAACTTGCCAAGTGAAGAACATGATTTTCTTAGGAATCTTAATCTAATCCTCAAAACCACATAAAAAACTGACTCACTAACAGGGCAACAACCCTGACATGAAATTCCCTCCTCCCAACGCTAAAGTGCACTCATCCAATAAAGAAAAAGAGAGGCAACCTTCATCCTTTCCCTATTGGACAAATGACGGTTGAGCCCCCAAAGAAAAAGACAGTTTTCGGACCAAACCAAGAAATAAAAAACCTACCTATTTTTGAAGGAGGACAAATGATAAAGATGAGGAAATGCGTAAGTAGAGGGGACTATCCCTCACCCATTGATCATCCTAAAATTGTGTTTCAATTAAGAAGGGGAAAGCTCAAGCGATATATCTTTCCACGGATTTCGGCGTCTTTTACCATTTGGCCTTGAACTGAATGCCATGATTAACTAATTGATTCTTAGAAGGCCAAGGAGAAAGAAAATGAAGTTGGGAAATCTAGAAAACATGAAACTATGGATGAGTAGAATGGCAAGCAGGTAGATCATGGTTATAAGTAAGATTGTTTATAAGTAAGATTGCTGTGTATAACATTTTATATACATCTATATTAGTCCTCTAAGGTCCATTACTCCGTTTATTTAGAACCAAGATCCTACTAGTTAATACCCGTAACCCTAAACCAATTGTTGAGATGAAGACCCAACGGAGAAAGCACCAGAGGGATCCAGAATCCAATTTCTCATATTCCCATGTCGATTTAACTTAGAACTTCCAGATTCGTAAGCAAAAACTCAAATAATAAATTTCTTCTTCTTTTAAGAGTTTGCAATTAGGAATATTCCATGAAAGACAAAAAGAATCCTATAAATTCAAGATCAAACATTAAAAAGGTATGTATAATGAAATATGACTTCGGTGAAGAATTTCCTGCCATAACATATATATATTTTATCGTATCCAATTTTGAAATTGGTGAAGCCTTCCACCCATACTTTAGAGATACTGATCACAAGCTTCTGTTGCTAAAGCGATTCTTTCCACAGCGTTTCACTCAAAGTGATCCATAGAGTGTATGCTGGCGACCACCTTACTCTAAAGAGAATTAGTCCTATTCGGCAATTATAGCCATATTCCTATATTTCAGCCCTCAATCTCCAAACCACTATCTATCTCGGATTTTGAGGATAATTTTCATCTTCTAAGATGATGTTAGACCACCCATCATACACACTTATGTGAGAGGGGTAGTACAGGGAATTCACCTAACGAGTTAGTAAGGCTGGGTGACGTGTACTGCTATATATATATATATATATTACTTTTGTGTTGTAGGGGACTTATGTTTTTTGGTTGTATGTCGGTACTGTGTACGGAGAGAACTCCCTCTCGAATTGGAGCCCCTGTATTTTGTTTAAAGTAATCTAAGTGTTATCTCTCGGTTGAGAGTTGTTACAGATGATTGATCTTTCCTCTTCATTACCTTCTGTGAGACCTCCCATCAAGAATGTTTATTCAAGAAAGCATAAGGAGGTAATTCAACAAGAGACAAACGACTAAAAGTAGTTGGATGAATTTAGGATTTAGGTTTTAGCATTTGTGATCAAAATTACTAAAATCACACCTATCATGCATGCAGATAAATGGAAAACCCGGAAGACCTGGATATCGTGCAAAACTTGCAAACCATTTTCCTATCTCTTATGACCGAAAAGGATAGATCCAGTGAATTGGTAGAGACGAGCAACACAAATCAATTGATGGTCGTAGTGAACAACGATCTACAGTCAATTGCAAATTTACCTTGGATATTGCATGAAGCGGCTGCCATTGTCGAAACTACCAATCAATTAACCCTATCTCTACCTGACCATAGAACAAATATATTAGGTAGCTCAAGGTAGTTCATAATAAAATACGTCAGCTAGTCACCAGAGGTTATCAACCACTTAACCTGTTTCAAGTACAAATATATTCAAATACTACCAATTACATGCTTGAAGAATACATTAAAATAGAAAACATAATTTCTCATATTCTTAGAAATGTTCGATCAATATTATCGAAAATGCTAGAGAGATTGCTCAGTATTTAGATCAACATGTTGTAGAAGCGGAAGAGAGAAGGGTTGCAGCATATAAATGTAAATGTCGGACGGGCTGCAGAAACCGTTGTGGTTACCGTAAGTTGGGAAAACAATGTACAGATGCGTTTAGTTTCTGCAGAAATGGTAATTGCCAAAATAGATAA

mRNA sequence

ATGAAAGGATCACTTTCATTGGAAAAAAAAATGAAAGAATATAAGATGTATGCTGGCGACCACCTTACTCTAAAGAGAATTATGAACAACGATCTACAGTCAATTGCAAATTTACCTTGGATATTGCATGAAGCGGCTGCCATTGTCGAAACTACCAATCAATTAACCCTATCTCTACCTGACCATAGAACAAATATATTAGTCACCAGAGGTTATCAACCACTTAACCTGTTTCAAGTACAAATATATTCAAATACTACCAATTACATGCTTGAAGAATACATTAAAATAGAAAACATAATTTCTCATATTCTTAGAAATATTGCTCAGTATTTAGATCAACATGTTGTAGAAGCGGAAGAGAGAAGGGTTGCAGCATATAAATGTAAATGTCGGACGGGCTGCAGAAACCGTTGTGGTTACCGTAAGTTGGGAAAACAATGTACAGATGCGTTTAGTTTCTGCAGAAATGGTAATTGCCAAAATAGATAA

Coding sequence (CDS)

ATGAAAGGATCACTTTCATTGGAAAAAAAAATGAAAGAATATAAGATGTATGCTGGCGACCACCTTACTCTAAAGAGAATTATGAACAACGATCTACAGTCAATTGCAAATTTACCTTGGATATTGCATGAAGCGGCTGCCATTGTCGAAACTACCAATCAATTAACCCTATCTCTACCTGACCATAGAACAAATATATTAGTCACCAGAGGTTATCAACCACTTAACCTGTTTCAAGTACAAATATATTCAAATACTACCAATTACATGCTTGAAGAATACATTAAAATAGAAAACATAATTTCTCATATTCTTAGAAATATTGCTCAGTATTTAGATCAACATGTTGTAGAAGCGGAAGAGAGAAGGGTTGCAGCATATAAATGTAAATGTCGGACGGGCTGCAGAAACCGTTGTGGTTACCGTAAGTTGGGAAAACAATGTACAGATGCGTTTAGTTTCTGCAGAAATGGTAATTGCCAAAATAGATAA

Protein sequence

MKGSLSLEKKMKEYKMYAGDHLTLKRIMNNDLQSIANLPWILHEAAAIVETTNQLTLSLPDHRTNILVTRGYQPLNLFQVQIYSNTTNYMLEEYIKIENIISHILRNIAQYLDQHVVEAEERRVAAYKCKCRTGCRNRCGYRKLGKQCTDAFSFCRNGNCQNR

Homology

[Close]

BLAST of PI0009837 vs. ExPASy TrEMBL
Match: A0A0A0K5T2 (AWS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G246640 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 5.0e-29
Identity = 81/173 (46.82%), Postives = 107/173 (61.85%), Query Frame = 0


Query: 21  HLTLKRI-------MNNDLQSIANLPWILHEAAAIVETTNQLTLSLPDHRTNI------- 80
           HLTL  +        ++ LQ I NL  +L +AAAIV T NQLTL L ++R  I       
Sbjct: 16  HLTLSLLSLAPVCPFHHQLQCIRNLHGVLRDAAAIVGTVNQLTLPLDNYRAIILARYREL 75

Query: 81  ------LVTRGYQPLNLFQVQIYSNTTNYMLEEYIKIENIISHI---LRNI-------AQ 140
                 L+ +GY+  ++  +QI S T N +L+ YI +EN +S+I   L++I       A 
Sbjct: 76  ENRIWRLINQGYRVFDMLYLQIISYTANQLLKAYIVVENTVSYIRMRLQSILSNAMESAS 135

Query: 141 YLDQHVVEAEERRVAAYKCKCRTGCRNRCGYRKLGKQCTDAFSFCRNGNCQNR 164
           +L Q +++AEERR+AA KCKCRTGC NRCG R+ GKQCTDA SFCRN NCQNR
Sbjct: 136 HLKQAMIQAEERRIAAIKCKCRTGCGNRCGCRRFGKQCTDACSFCRNSNCQNR 188

[Close]

BLAST of PI0009837 vs. NCBI nr
Match: KAE8646116.1 (hypothetical protein Csa_016893 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 9.9e-24
Identity = 76/181 (41.99%), Postives = 108/181 (59.67%), Query Frame = 0


Query: 1   MKGSLSLEKKMKEYKMYAGDHLTLKRIMNND-LQSIANLPWILHEAAAIVETTNQLTLSL 60
           +  SL L+K      + + +   +  ++N+D LQ I NL  +L +AAAIV T NQLTL L
Sbjct: 16  LSNSLLLDKDRTNDLVNSSNAGLMVAMLNDDNLQCIRNLHGVLRDAAAIVGTVNQLTLPL 75

Query: 61  PDHRTNI-------------LVTRGYQPLNLFQVQIYSNTTNYMLEEYIKIENIISHI-- 120
            ++R  I             L+ +GY+  ++  +QI S T N +L+ YI +EN +S+I  
Sbjct: 76  DNYRAIILARYRELENRIWRLINQGYRVFDMLYLQIISYTANQLLKAYIVVENTVSYIRM 135

Query: 121 -LRNI-------AQYLDQHVVEAEERRVAAYKCKCRTGCRNRCGYRKLGKQCTDAFSFCR 158
            L++I       A +L Q +++AEERR+AA KCKCRT C NRCG  + GKQCTDA SFCR
Sbjct: 136 RLQSILSNAMESASHLKQAMIQAEERRIAAIKCKCRTSCGNRCGCCRFGKQCTDACSFCR 195

The following BLAST results are available for this feature:

BLAST of PI0009837 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009837 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5T2	5.0e-29	46.82	AWS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G246640 PE=4 SV...	[more]

BLAST of PI0009837 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646116.1	9.9e-24	41.99	hypothetical protein Csa_016893 [Cucumis sativus]	[more]

BLAST of PI0009837 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009837.1	PI0009837.1	mRNA