PI0009827 (gene) Melon (PI 482460) v1

Overview


Name	PI0009827
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr09: 9080960 .. 9082373 (-)
RNA-Seq Expression	PI0009827
Synteny	PI0009827

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGAGGTAGAGAAATGCGCAAAGAATGGAGAATATAACAATAGGAATTTACCTCCGCCTCAAACTGCCCAAGAACAAAACGCGGCCTACATGGCGCATGACTTGGATAGGCCAACTAGGTCATATGCTGCACCCAACCGCTACAACTTCAACCTAGGGATCGCCTACCCTGTGTTCAACGAGAACGCTAGATTTGAAATTAAACCTGTAATGCTGCAAATGATTTAGAACGTCAGATTGTTTGGCGGTCATCTTGGGGAAGATCCACATGAACACATAAGAAGTTTCTACTCTATCTGTGCATCCTTCCATATGTCAGGCATCTCATCCAAAGAATTAAGATTCGCGCTTTTTCCGTTAACTCTGAGGACGAGGTGAAAAGGTGGGCCAACACCTTGGAAGATGGCAAGGTGAGAACGTGGGACCAATTAATAGAAAAATTCATGAAGAAATTTTCCCACCTCACGAGAACGCCAGAAGAAGGAAAGAGCTCATGAGCTTTCAACAGAAAGATAGAGAGAACCTACATGACGTGTGGAGTAGGTTCAAGAGGATGGTCAAAGTATGCCCCACAATGGCATTTCTAGATGCATATTGATGGAGGTGTTCTATTTTGGCTTGAACAAGGCAACATAGCAGACTGCTGATGCTGTGTTTGTAGGTGGTATGCTGAAGAGCTCATACAACCAGATTAAGGCAACGCTGGACACGATGGCCAGCAATAACGAAGAATGGGATGAAGATGATTTCAGCAATCGTCGAGGAGGACACGGACAAAGCGAAGAAGGAATGGATAATAATGTCGTGGTGGTGTTGCAAGGACAAATGACTGTGATGCAACCTTCTGAAATCTATGGCAATATCGCAAGTTAATGTCGTAGGAAGCTCTGTGCAGGCGGTAAATCAAATTGATGACATGGGATGTGTGGGATGCGGTGGTCCTCATAATACTGATGCATGCCCACTAAATACAGAAACTATCGCGTTCGTAAGGAATGACCCTTTCTCCAACACCTACAATCCTGGTTGGAGAAACCATCCTAACTTTGGATGGGGAGGAACGGGTCAACAAAATCAAGGACGACATGCTGGTCAAGGTGACCATCGCGGGGAAGAATCTGGCTCCCACGCGAGGTACCACAACAACAGGCCACAACATTCCCAACATCAACAGCAACACACCACCACTACTCCATCCACTTCTTCATCTATTGAAAACCTCCTCCCCAAATATATGCAGAAGAACGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCACAACCTAAAAGTACAGTTAGGGCAGTTAGCCAGCAACTTCTCTGGAAGGCCACAAGGATCCCTCCCAAGTAATATAGAAACGCCAAATCAGGCGGGGGGTCTGGAAAAGAGAAGTGTCACGCGGTGA

mRNA sequence

ATGAAGAAGGAGGTAGAGAAATGCGCAAAGAATGGAGAATATAACAATAGGAATTTACCTCCGCCTCAAACTGCCCAAGAACAAAACGCGGCCTACATGGCGCATGACTTGGATAGGCCAACTAGGTCATATGCTGCACCCAACCGCTACAACTTCAACCTAGGGATCGCCTACCCTGTGCATCTCATCCAAAGAATTAAGATTCGCGCTTTTTCCGTTAACTCTGAGGACGAGGTGAAAAGGTGGGCCAACACCTTGGAAGATGGCAAGACTGCTGATGCTGTGTTTGTAGGTGGTATGCTGAAGAGCTCATACAACCAGATTAAGGCAACGCTGGACACGATGGCCAGCAATAACGAAGAATGGGATGAAGATGATTTCAGCAATCGTCGAGGAGGACACGGACAAAGCGAAGAAGGAATGGATAATAATGTCGTGGTGGTGTTGCAAGGACAAATGACTGTGATGCAACCTTCTGAAATCTATGGCAATATCGCAAGTGACCATCGCGGGGAAGAATCTGGCTCCCACGCGAGGTACCACAACAACAGGCCACAACATTCCCAACATCAACAGCAACACACCACCACTACTCCATCCACTTCTTCATCTATTGAAAACCTCCTCCCCAAATATATGCAGAAGAACGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCACAACCTAAAAGTACAGTTAGGGCAGTTAGCCAGCAACTTCTCTGGAAGGCCACAAGGATCCCTCCCAAGTAATATAGAAACGCCAAATCAGGCGGGGGGTCTGGAAAAGAGAAGTGTCACGCGGTGA

Coding sequence (CDS)

ATGAAGAAGGAGGTAGAGAAATGCGCAAAGAATGGAGAATATAACAATAGGAATTTACCTCCGCCTCAAACTGCCCAAGAACAAAACGCGGCCTACATGGCGCATGACTTGGATAGGCCAACTAGGTCATATGCTGCACCCAACCGCTACAACTTCAACCTAGGGATCGCCTACCCTGTGCATCTCATCCAAAGAATTAAGATTCGCGCTTTTTCCGTTAACTCTGAGGACGAGGTGAAAAGGTGGGCCAACACCTTGGAAGATGGCAAGACTGCTGATGCTGTGTTTGTAGGTGGTATGCTGAAGAGCTCATACAACCAGATTAAGGCAACGCTGGACACGATGGCCAGCAATAACGAAGAATGGGATGAAGATGATTTCAGCAATCGTCGAGGAGGACACGGACAAAGCGAAGAAGGAATGGATAATAATGTCGTGGTGGTGTTGCAAGGACAAATGACTGTGATGCAACCTTCTGAAATCTATGGCAATATCGCAAGTGACCATCGCGGGGAAGAATCTGGCTCCCACGCGAGGTACCACAACAACAGGCCACAACATTCCCAACATCAACAGCAACACACCACCACTACTCCATCCACTTCTTCATCTATTGAAAACCTCCTCCCCAAATATATGCAGAAGAACGATGCCCTTCTGCAAAGCCAAGCTTCATCAATTCACAACCTAAAAGTACAGTTAGGGCAGTTAGCCAGCAACTTCTCTGGAAGGCCACAAGGATCCCTCCCAAGTAATATAGAAACGCCAAATCAGGCGGGGGGTCTGGAAAAGAGAAGTGTCACGCGGTGA

Protein sequence

MKKEVEKCAKNGEYNNRNLPPPQTAQEQNAAYMAHDLDRPTRSYAAPNRYNFNLGIAYPVHLIQRIKIRAFSVNSEDEVKRWANTLEDGKTADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFSNRRGGHGQSEEGMDNNVVVVLQGQMTVMQPSEIYGNIASDHRGEESGSHARYHNNRPQHSQHQQQHTTTTPSTSSSIENLLPKYMQKNDALLQSQASSIHNLKVQLGQLASNFSGRPQGSLPSNIETPNQAGGLEKRSVTR

Homology

[Close]

BLAST of PI0009827 vs. ExPASy TrEMBL
Match: A0A5D3D2S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00800 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.1e-24
Identity = 87/219 (39.73%), Postives = 115/219 (52.51%), Query Frame = 0


Query: 100 MLKSSYNQIKATLDTMASNNEEWDEDDFSNRRGGHGQSEEGMDNNVVVVLQGQMTVMQ-- 159
           ML+SSY QIK TLD + +N++E  +DD   +    G+++ GMD NV+V LQGQ+T M+  
Sbjct: 1   MLQSSYYQIKTTLDAITNNSQELRDDDLRLQHESRGRTDAGMDRNVIVALQGQVTKMKKL 60

Query: 160 -------------------------------------------------PSEIYGNI--A 219
                                                             S  Y N   A
Sbjct: 61  LQSMALSQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNA 120

Query: 220 SDHRGEESGSHARYHNNRPQHSQHQ-QQHTTTTPSTSSSIENLLPKYMQKNDALLQSQAS 265
            ++RG E+  H + H +RP +S  Q QQ TT TPS+ SS+  LL KYMQ+ DA +QSQ +
Sbjct: 121 GNYRG-EAPDHRQRHYDRPHYSAPQHQQATTNTPSSFSSMVALLRKYMQRKDAFMQSQTT 180

[Close]

BLAST of PI0009827 vs. ExPASy TrEMBL
Match: A0A5D3DWD5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00200 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.5e-19
Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 158 PSEIYGNIASDHRGEESGSHARYHNNRPQHS-QHQQQHTTTTPSTSSSIENLLPKYMQKN 217
           P  I G   S H G+ SG   R H +RP HS   QQQ TT TPS SSS+E L+  YM++N
Sbjct: 10  PQNIDGGQGSYH-GKASGYRQRQHQDRPHHSTPQQQQATTNTPSFSSSMETLIRGYMKRN 69

Query: 218 DALLQSQASSIHNLKVQLGQLASNFSGRPQGSLPSNIETPNQAGGLEKRSV 268
           DALLQSQA+SI NL++Q+GQ+A +FS RPQ  LPSN E  NQAG L+KRSV
Sbjct: 70  DALLQSQATSIRNLELQMGQIAIDFSERPQVFLPSNTEMSNQAGDLKKRSV 119

[Close]

BLAST of PI0009827 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-16
Identity = 71/190 (37.37%), Postives = 105/190 (55.26%), Query Frame = 0


Query: 84  NTLEDGKTADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFSNR------RGGHGQS 143
           NTL+   +A+ VF GGML+SSYNQIK  LDTMASN++EW ++ F +R      +G  G+ 
Sbjct: 46  NTLQ---SANIVFTGGMLRSSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRI 105

Query: 144 EEGMDNNVVVVLQGQ---------MTVMQPSEIYGNIASDHRGEESGSHARYHNNRPQHS 203
           E+G+D +++V LQGQ         M ++Q + +  ++    +  E G        R  H+
Sbjct: 106 EDGIDMSIMVALQGQVIEMNILQSMALLQVNVVRSSVQMVQQVNEMGC----VGCRAPHN 165

Query: 204 QHQQQHTTTTPSTSSSIENLLPKYMQKNDALLQSQASSIHNLKVQLGQLASNFSGRPQGS 259
            +     T   +   +    +          + SQASSI N+++QLGQL S+FS RP+ S
Sbjct: 166 TNACPLNTEIVAYLKNDPTPIHIMWGGETTQISSQASSIKNMELQLGQLTSDFSRRPKRS 225

[Close]

BLAST of PI0009827 vs. ExPASy TrEMBL
Match: A0A5D3D4Y1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001280 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-12
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 31  AYMAHDLDRPTRSYAAPNRYNFNLGIAYPVHLIQRIKIRAFSVNSEDEVKRWANTLEDGK 90
           AY+AHDLDR  RSY + N+Y+FN GIAYP             V+ ED      + +   +
Sbjct: 8   AYLAHDLDRLIRSYTSSNQYDFNPGIAYP-------------VSGEDVRFEIKHVMPQME 67

Query: 91  TADAVFVGGMLKSSYNQIKATLDTMASNNEE 122
           TADAVFVGGML+SSYNQIK  L  MAS +++
Sbjct: 68  TADAVFVGGMLRSSYNQIKTMLSAMASKSQK 85

[Close]

BLAST of PI0009827 vs. ExPASy TrEMBL
Match: A0A5A7U1G5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00940 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-11
Identity = 40/63 (63.49%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 205 IENLLPKYMQKNDALLQSQASSIHNLKVQLGQLASNFSGRPQGSLPSNIETPNQAGGLEK 264
           +E LL +YMQ+NDALLQ+QA+SI NLK+QL QLAS+ SGRP+GSLP++ +TPN+ G   K
Sbjct: 1   METLLREYMQRNDALLQTQATSIKNLKLQLAQLASDISGRPRGSLPNSTKTPNKVGDPRK 60

Query: 265 RSV 268
            SV
Sbjct: 61  ISV 63

[Close]

BLAST of PI0009827 vs. NCBI nr
Match: KAA0040852.1 (hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK17828.1 hypothetical protein E5676_scaffold306G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 1.3e-23
Identity = 87/219 (39.73%), Postives = 115/219 (52.51%), Query Frame = 0


Query: 100 MLKSSYNQIKATLDTMASNNEEWDEDDFSNRRGGHGQSEEGMDNNVVVVLQGQMTVMQ-- 159
           ML+SSY QIK TLD + +N++E  +DD   +    G+++ GMD NV+V LQGQ+T M+  
Sbjct: 1   MLQSSYYQIKTTLDAITNNSQELRDDDLRLQHESRGRTDAGMDRNVIVALQGQVTKMKKL 60

Query: 160 -------------------------------------------------PSEIYGNI--A 219
                                                             S  Y N   A
Sbjct: 61  LQSMALSQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNA 120

Query: 220 SDHRGEESGSHARYHNNRPQHSQHQ-QQHTTTTPSTSSSIENLLPKYMQKNDALLQSQAS 265
            ++RG E+  H + H +RP +S  Q QQ TT TPS+ SS+  LL KYMQ+ DA +QSQ +
Sbjct: 121 GNYRG-EAPDHRQRHYDRPHYSAPQHQQATTNTPSSFSSMVALLRKYMQRKDAFMQSQTT 180

[Close]

BLAST of PI0009827 vs. NCBI nr
Match: TYK27798.1 (hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 7.1e-19
Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 158 PSEIYGNIASDHRGEESGSHARYHNNRPQHS-QHQQQHTTTTPSTSSSIENLLPKYMQKN 217
           P  I G   S H G+ SG   R H +RP HS   QQQ TT TPS SSS+E L+  YM++N
Sbjct: 10  PQNIDGGQGSYH-GKASGYRQRQHQDRPHHSTPQQQQATTNTPSFSSSMETLIRGYMKRN 69

Query: 218 DALLQSQASSIHNLKVQLGQLASNFSGRPQGSLPSNIETPNQAGGLEKRSV 268
           DALLQSQA+SI NL++Q+GQ+A +FS RPQ  LPSN E  NQAG L+KRSV
Sbjct: 70  DALLQSQATSIRNLELQMGQIAIDFSERPQVFLPSNTEMSNQAGDLKKRSV 119

[Close]

BLAST of PI0009827 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 3.3e-16
Identity = 71/190 (37.37%), Postives = 105/190 (55.26%), Query Frame = 0


Query: 84  NTLEDGKTADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFSNR------RGGHGQS 143
           NTL+   +A+ VF GGML+SSYNQIK  LDTMASN++EW ++ F +R      +G  G+ 
Sbjct: 46  NTLQ---SANIVFTGGMLRSSYNQIKNMLDTMASNSQEWRDESFGSRNDSRGTKGNRGRI 105

Query: 144 EEGMDNNVVVVLQGQ---------MTVMQPSEIYGNIASDHRGEESGSHARYHNNRPQHS 203
           E+G+D +++V LQGQ         M ++Q + +  ++    +  E G        R  H+
Sbjct: 106 EDGIDMSIMVALQGQVIEMNILQSMALLQVNVVRSSVQMVQQVNEMGC----VGCRAPHN 165

Query: 204 QHQQQHTTTTPSTSSSIENLLPKYMQKNDALLQSQASSIHNLKVQLGQLASNFSGRPQGS 259
            +     T   +   +    +          + SQASSI N+++QLGQL S+FS RP+ S
Sbjct: 166 TNACPLNTEIVAYLKNDPTPIHIMWGGETTQISSQASSIKNMELQLGQLTSDFSRRPKRS 225

[Close]

BLAST of PI0009827 vs. NCBI nr
Match: XP_030509265.1 (uncharacterized protein LOC115723943 [Cannabis sativa])

HSP 1 Score: 89.7 bits (221), Expect = 4.1e-14
Identity = 65/182 (35.71%), Postives = 98/182 (53.85%), Query Frame = 0


Query: 93  DAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFSNRRGGHGQSEEG-MDNNVVVVLQG 152
           DA   G +L  SYN+    L+T+ASNN +W     SN R    +   G ++ + +  L  
Sbjct: 103 DASANGAILSKSYNEAFEILETIASNNYQW-----SNTRAPTSRKVAGVLEVDAITALTA 162

Query: 153 QMTVM---QPSEIYGNIASDHRGEESGSHARY---HNNRPQHSQHQQQHTTTTPSTSSSI 212
           QM  M    P+  +G   +      +     Y    + +P+HSQH Q       +  SS+
Sbjct: 163 QMASMTNNHPNLSWGGQGASSSTAPAQGRQAYPPGFSQQPRHSQHAQN------AQPSSL 222

Query: 213 ENLLPKYMQKNDALLQSQASSIHNLKVQLGQLASNFSGRPQGSLPSNIETPNQAGGLEKR 268
           E+L+  YM KNDA++QSQA+S+ NL++QLG LA+    RPQGSLPS+ E P + G  + +
Sbjct: 223 ESLMRDYMAKNDAVIQSQAASLRNLELQLGHLANELKARPQGSLPSDTENPRRDGKEQCK 273

[Close]

BLAST of PI0009827 vs. NCBI nr
Match: XP_038891676.1 (uncharacterized protein LOC120081070 [Benincasa hispida])

HSP 1 Score: 89.4 bits (220), Expect = 5.3e-14
Identity = 72/219 (32.88%), Postives = 97/219 (44.29%), Query Frame = 0


Query: 93  DAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFSNR--RGGHGQSEEGMDNNVVVVLQ 152
           DA   GG++  SY + K  LD +A  N EW +D +  R  R    Q+   +D N +  L 
Sbjct: 4   DAAVAGGIMDKSYTEAKEILDRIAIPNMEWMDDTYDGRDDRKKRSQNVNSIDFNTIATLS 63

Query: 153 GQ---MTVMQPSEIYGNIASD-------------------------------HRGEESGS 212
            Q   MT +  +   GN ++                                HRG     
Sbjct: 64  AQVATMTRLLQNISLGNASNQQKVNQVEAFGQPWLAVWAVEILILMLSAHKTHRGNHQEH 123

Query: 213 HARYHNNR---------PQHSQHQQQHTT--TTPSTSSSIENLLPKYMQKNDALLQSQAS 265
           H R +  +         P H  HQQ       T S+ S +ENLL +Y+ +NDALL+SQAS
Sbjct: 124 HPRANQQKRQGPLPAFQPTHQPHQQSFNREGQTSSSGSPLENLLKEYIAQNDALLKSQAS 183

The following BLAST results are available for this feature:

BLAST of PI0009827 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009827 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D2S0	6.1e-24	39.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DWD5	3.5e-19	58.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CC26	1.6e-16	37.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D4Y1	4.1e-12	49.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U1G5	2.7e-11	63.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0009827 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040852.1	1.3e-23	39.73	hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK1782...	[more]
TYK27798.1	7.1e-19	58.56	hypothetical protein E5676_scaffold749G00200 [Cucumis melo var. makuwa]	[more]
KAA0048713.1	3.3e-16	37.37	hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916...	[more]
XP_030509265.1	4.1e-14	35.71	uncharacterized protein LOC115723943 [Cannabis sativa]	[more]
XP_038891676.1	5.3e-14	32.88	uncharacterized protein LOC120081070 [Benincasa hispida]	[more]

BLAST of PI0009827 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009827.1	PI0009827.1	mRNA