PI0009742 (gene) Melon (PI 482460) v1

Overview


Name	PI0009742
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr07: 12958463 .. 12959566 (-)
RNA-Seq Expression	PI0009742
Synteny	PI0009742

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTGGTCAATAAATTTTATGTCTCTAAACCTAATGCTAAGGAGTTTAGCATGCAACTAACTGGAAAGGTGGTGAGCTTCAGTGCGGAGGCAATCGGTGACTTGTATGAATTGCCCAATGATGTTGAAACACCTGGGCATGAGTGTATGGTCAGGCCTACGAAGAATATGGCCCGTAAAGCACTGGAGGTAATCGCCTGGCCTGGGGCGGCATGGGATATAACGCCTACTCGGAAGTATCAGTTGCATCCACACCAGCTGACCACTGAAGCGAATGTGTGGCTTTTCTTCATCAAAAGGAAGATATTTCCCACGCGCCATGATAGCTCCATCACCTTCGAATCTGCGATGCTTCTATATTGCATCTTGAAGAGATGGTGCGTTAACCTAGGCGATCTGATAGCCCACTCTATTCTTTCTTGGATAGAAACTCCCAAGGGCGCCATGCCCTTTCCGTGTACTATGGAGGCTCTTTGCCTGAGGGCCCACCCTTATCTTTATGCCATCACCTAAATGTCAATTCCAAGCGGCCTTTGCACCCTAATGGCTTTAAATCGCCTAATCACTATCCATGCTCACAAGGAGATGGATAGGCGGTTAGAGACACTTGGCCATGCAGATGAAGAAAAGGGTGAGACTCAGGTACAATCCCTCAAGAGGAAAGCCCCTCATACCGCATCAACCCCCAAGCTTACCATAAAAAAGCCAAAGGTTGATGCAAAGGCCCAACCCAAGCCCCTCAAAATACTTCATCCATCCACGCACCCTGAAAAACGAGCTCCCGCAAAAGTCCAAAAGCCACAAAAAGAACCCAACCTCTCTCTTTCCTTTAGCTTTTCTTCACCCATTCCATCACCATGCCTTTTATCTCCTCGCCTCCCTTCCTCCACTCCGCCTAAAACCACATCTCCCAACCTTTCCACACTTGTACCTTCCCCAAGGCGAGCTAGTACATTATCGCGTTTTAATCTCTCGCCCATCATTGACCTTTTCCACCTTCGCACTAACCAGCCCCCTGCCGCCACTGAGGCCGTTGAGGTGCCCTCTACAGCGTCCCTCTCTAATTCTTATTCTTTTCGAAGAGGACACCAACCCAGATGA

mRNA sequence

ATGGATGTGGTCAATAAATTTTATGTCTCTAAACCTAATGCTAAGGAGTTTAGCATGCAACTAACTGGAAAGGTGGTGAGCTTCAGTGCGGAGGCAATCGGTGACTTGTATGAATTGCCCAATGATGTTGAAACACCTGGGCATGAGTGTATGGTCAGGCCTACGAAGAATATGGCCCGTAAAGCACTGGAGGTAATCGCCTGGCCTGGGGCGGCATGGGATATAACGCCTACTCGGAAGTATCAGTTGCATCCACACCAGCTGACCACTGAAGCGAATGTGTGGCTTTTCTTCATCAAAAGGAAGATATTTCCCACGCGCCATGATAGCTCCATCACCTTCGAATCTGCGATGCTTCTATATTGCATCTTGAAGAGATGCGGCCTTTGCACCCTAATGGCTTTAAATCGCCTAATCACTATCCATGCTCACAAGGAGATGGATAGGCGGTTAGAGACACTTGGCCATGCAGATGAAGAAAAGGGTGAGACTCAGGTACAATCCCTCAAGAGGAAAGCCCCTCATACCGCATCAACCCCCAAGCTTACCATAAAAAAGCCAAAGGTTGATGCAAAGGCCCAACCCAAGCCCCTCAAAATACTTCATCCATCCACGCACCCTGAAAAACGAGCTCCCGCAAAAGTCCAAAAGCCACAAAAAGAACCCAACCTCTCTCTTTCCTTTAGCTTTTCTTCACCCATTCCATCACCATGCCTTTTATCTCCTCGCCTCCCTTCCTCCACTCCGCCTAAAACCACATCTCCCAACCTTTCCACACTTGTACCTTCCCCAAGGCGAGCTAGTACATTATCGCGTTTTAATCTCTCGCCCATCATTGACCTTTTCCACCTTCGCACTAACCAGCCCCCTGCCGCCACTGAGGCCGTTGAGGTGCCCTCTACAGCGTCCCTCTCTAATTCTTATTCTTTTCGAAGAGGACACCAACCCAGATGA

Coding sequence (CDS)

ATGGATGTGGTCAATAAATTTTATGTCTCTAAACCTAATGCTAAGGAGTTTAGCATGCAACTAACTGGAAAGGTGGTGAGCTTCAGTGCGGAGGCAATCGGTGACTTGTATGAATTGCCCAATGATGTTGAAACACCTGGGCATGAGTGTATGGTCAGGCCTACGAAGAATATGGCCCGTAAAGCACTGGAGGTAATCGCCTGGCCTGGGGCGGCATGGGATATAACGCCTACTCGGAAGTATCAGTTGCATCCACACCAGCTGACCACTGAAGCGAATGTGTGGCTTTTCTTCATCAAAAGGAAGATATTTCCCACGCGCCATGATAGCTCCATCACCTTCGAATCTGCGATGCTTCTATATTGCATCTTGAAGAGATGCGGCCTTTGCACCCTAATGGCTTTAAATCGCCTAATCACTATCCATGCTCACAAGGAGATGGATAGGCGGTTAGAGACACTTGGCCATGCAGATGAAGAAAAGGGTGAGACTCAGGTACAATCCCTCAAGAGGAAAGCCCCTCATACCGCATCAACCCCCAAGCTTACCATAAAAAAGCCAAAGGTTGATGCAAAGGCCCAACCCAAGCCCCTCAAAATACTTCATCCATCCACGCACCCTGAAAAACGAGCTCCCGCAAAAGTCCAAAAGCCACAAAAAGAACCCAACCTCTCTCTTTCCTTTAGCTTTTCTTCACCCATTCCATCACCATGCCTTTTATCTCCTCGCCTCCCTTCCTCCACTCCGCCTAAAACCACATCTCCCAACCTTTCCACACTTGTACCTTCCCCAAGGCGAGCTAGTACATTATCGCGTTTTAATCTCTCGCCCATCATTGACCTTTTCCACCTTCGCACTAACCAGCCCCCTGCCGCCACTGAGGCCGTTGAGGTGCCCTCTACAGCGTCCCTCTCTAATTCTTATTCTTTTCGAAGAGGACACCAACCCAGATGA

Protein sequence

MDVVNKFYVSKPNAKEFSMQLTGKVVSFSAEAIGDLYELPNDVETPGHECMVRPTKNMARKALEVIAWPGAAWDITPTRKYQLHPHQLTTEANVWLFFIKRKIFPTRHDSSITFESAMLLYCILKRCGLCTLMALNRLITIHAHKEMDRRLETLGHADEEKGETQVQSLKRKAPHTASTPKLTIKKPKVDAKAQPKPLKILHPSTHPEKRAPAKVQKPQKEPNLSLSFSFSSPIPSPCLLSPRLPSSTPPKTTSPNLSTLVPSPRRASTLSRFNLSPIIDLFHLRTNQPPAATEAVEVPSTASLSNSYSFRRGHQPR

Homology

[Close]

BLAST of PI0009742 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-24
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 1   MDVVNKFYVSKPNAKEFSMQLTGKVVSFSAEAIGDLYELPNDVETPGHECMVRPTKNMAR 60
           MDVV+KFY  K N  +  + +  +   F+ E I +LY  PND E  G E + + TK +A+
Sbjct: 5   MDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKGLAK 64

Query: 61  KALEVIAWPGAAWDITPTR-KYQLHPHQLTTEANVWLFFIKRKIFPTRHDSSITFESAML 120
           +AL+V+AWPG   ++ P + +YQL+PH LTT+ANVW+FF K KIFPT +DS+I+ +  ++
Sbjct: 65  EALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDYTVI 124

Query: 121 LYCIL 125
           LYCI+
Sbjct: 125 LYCIM 128

[Close]

BLAST of PI0009742 vs. ExPASy TrEMBL
Match: A0A5D3DES7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00570 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-22
Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 7   FYVSKPNAKEFSMQLTGKVVSFSAEAIGDLYELPNDVET-PGHECMVRPTKNMARKALEV 66
           FY +K ++ E  + +  K VSF+ E I +LY L ND+++ P    +  PTK  +R  +++
Sbjct: 6   FYAAKYHSNESYVIVERKKVSFTMEEINELYGLLNDLDSYPSQSLIAEPTKGDSRMIIQL 65

Query: 67  IAWPGAAWDITPTRKYQLHPHQLTTEANVWLFFIKRKIFPTRHDSSITFESAMLLYC 123
           IAW GA W  T TR  QL+PHQLTTEANVWL FIK+KI P  +DS++  E  +LLYC
Sbjct: 66  IAWLGAGWTRTTTRSLQLYPHQLTTEANVWLLFIKKKIIPMCYDSTVPIEYMLLLYC 122

[Close]

BLAST of PI0009742 vs. ExPASy TrEMBL
Match: A0A5A7U806 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 12   PNAKEFSMQLTGKVVSFSAEAIGDLYELPNDVET-PGHECMVRPTKNMARKALEVIAWPG 71
            P  +E    +  + V F+ E I +LY+LPND+   PG   +V   +  A+K +++I WP 
Sbjct: 1218 PFGRESYAIVEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPE 1277

Query: 72   AAWDITPTRKYQLHPHQLTTEANVWLFFIKRKIFPTRHDSSITFESAMLLYCI 124
            A    TPTR+ QL PHQLT EANVWLFFIK+KIFPT HDS+I  E A++LYCI
Sbjct: 1278 ADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCI 1330

[Close]

BLAST of PI0009742 vs. ExPASy TrEMBL
Match: A0A5D3CVL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00870 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-22
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 12  PNAKEFSMQLTGKVVSFSAEAIGDLYELPNDVET-PGHECMVRPTKNMARKALEVIAWPG 71
           P  +E    +  + V F+ E I +LY+LPND+   PG   +V   +  A+K +++I WP 
Sbjct: 57  PFGRESYAIVEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPE 116

Query: 72  AAWDITPTRKYQLHPHQLTTEANVWLFFIKRKIFPTRHDSSITFESAMLLYCI 124
           A    TPTR+ QL PHQLT EANVWLFFIK+KIFPT HDS+I  E A++LYCI
Sbjct: 117 ADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCI 169

[Close]

BLAST of PI0009742 vs. ExPASy TrEMBL
Match: A0A5A7TZE0 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001090 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.7e-21
Identity = 55/127 (43.31%), Postives = 75/127 (59.06%), Query Frame = 0


Query: 3   VVNKFYVSKPNAKEFSMQLTGKVVSFSAEAIGDLYELPNDVETPGHECMVRPTKNMARKA 62
           V+N FY    N +     + GK+V+F  + +  LY L     T  +     P+    + A
Sbjct: 168 VMNLFYNGSINTERHYAIVKGKMVNFGPKVVNVLYGLRQ--TTVEYPIFKEPSDIDMQNA 227

Query: 63  LEVIAWPGAAWDITPTRKYQLHPHQLTTEANVWLFFIKRKIFPTRHDSSITFESAMLLYC 122
           LE +AWPG  WDITP +KYQL PH L T A+VWL FIK+ + PTRHD++I+ E  MLLYC
Sbjct: 228 LERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKNLMPTRHDNTISLERIMLLYC 287

Query: 123 ILKRCGL 130
           I++   L
Sbjct: 288 IMEEIPL 292

[Close]

BLAST of PI0009742 vs. NCBI nr
Match: KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 3.0e-24
Identity = 58/125 (46.40%), Postives = 86/125 (68.80%), Query Frame = 0


Query: 1   MDVVNKFYVSKPNAKEFSMQLTGKVVSFSAEAIGDLYELPNDVETPGHECMVRPTKNMAR 60
           MDVV+KFY  K N  +  + +  +   F+ E I +LY  PND E  G E + + TK +A+
Sbjct: 5   MDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKGLAK 64

Query: 61  KALEVIAWPGAAWDITPTR-KYQLHPHQLTTEANVWLFFIKRKIFPTRHDSSITFESAML 120
           +AL+V+AWPG   ++ P + +YQL+PH LTT+ANVW+FF K KIFPT +DS+I+ +  ++
Sbjct: 65  EALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDYTVI 124

Query: 121 LYCIL 125
           LYCI+
Sbjct: 125 LYCIM 128

[Close]

BLAST of PI0009742 vs. NCBI nr
Match: TYK22187.1 (hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 3.6e-22
Identity = 56/117 (47.86%), Postives = 77/117 (65.81%), Query Frame = 0


Query: 7   FYVSKPNAKEFSMQLTGKVVSFSAEAIGDLYELPNDVET-PGHECMVRPTKNMARKALEV 66
           FY +K ++ E  + +  K VSF+ E I +LY L ND+++ P    +  PTK  +R  +++
Sbjct: 6   FYAAKYHSNESYVIVERKKVSFTMEEINELYGLLNDLDSYPSQSLIAEPTKGDSRMIIQL 65

Query: 67  IAWPGAAWDITPTRKYQLHPHQLTTEANVWLFFIKRKIFPTRHDSSITFESAMLLYC 123
           IAW GA W  T TR  QL+PHQLTTEANVWL FIK+KI P  +DS++  E  +LLYC
Sbjct: 66  IAWLGAGWTRTTTRSLQLYPHQLTTEANVWLLFIKKKIIPMCYDSTVPIEYMLLLYC 122

[Close]

BLAST of PI0009742 vs. NCBI nr
Match: KAA0049609.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 6.2e-22
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 12   PNAKEFSMQLTGKVVSFSAEAIGDLYELPNDVET-PGHECMVRPTKNMARKALEVIAWPG 71
            P  +E    +  + V F+ E I +LY+LPND+   PG   +V   +  A+K +++I WP 
Sbjct: 1218 PFGRESYAIVEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPE 1277

Query: 72   AAWDITPTRKYQLHPHQLTTEANVWLFFIKRKIFPTRHDSSITFESAMLLYCI 124
            A    TPTR+ QL PHQLT EANVWLFFIK+KIFPT HDS+I  E A++LYCI
Sbjct: 1278 ADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCI 1330

[Close]

BLAST of PI0009742 vs. NCBI nr
Match: TYK15967.1 (hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 6.2e-22
Identity = 57/113 (50.44%), Postives = 75/113 (66.37%), Query Frame = 0


Query: 12  PNAKEFSMQLTGKVVSFSAEAIGDLYELPNDVET-PGHECMVRPTKNMARKALEVIAWPG 71
           P  +E    +  + V F+ E I +LY+LPND+   PG   +V   +  A+K +++I WP 
Sbjct: 57  PFGRESYAIVEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPE 116

Query: 72  AAWDITPTRKYQLHPHQLTTEANVWLFFIKRKIFPTRHDSSITFESAMLLYCI 124
           A    TPTR+ QL PHQLT EANVWLFFIK+KIFPT HDS+I  E A++LYCI
Sbjct: 117 ADCTSTPTRRLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCI 169

[Close]

BLAST of PI0009742 vs. NCBI nr
Match: KAA0048500.1 (protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 111.7 bits (278), Expect = 1.2e-20
Identity = 55/127 (43.31%), Postives = 75/127 (59.06%), Query Frame = 0


Query: 3   VVNKFYVSKPNAKEFSMQLTGKVVSFSAEAIGDLYELPNDVETPGHECMVRPTKNMARKA 62
           V+N FY    N +     + GK+V+F  + +  LY L     T  +     P+    + A
Sbjct: 168 VMNLFYNGSINTERHYAIVKGKMVNFGPKVVNVLYGLRQ--TTVEYPIFKEPSDIDMQNA 227

Query: 63  LEVIAWPGAAWDITPTRKYQLHPHQLTTEANVWLFFIKRKIFPTRHDSSITFESAMLLYC 122
           LE +AWPG  WDITP +KYQL PH L T A+VWL FIK+ + PTRHD++I+ E  MLLYC
Sbjct: 228 LERVAWPGMKWDITPIKKYQLFPHNLKTTASVWLVFIKKNLMPTRHDNTISLERIMLLYC 287

Query: 123 ILKRCGL 130
           I++   L
Sbjct: 288 IMEEIPL 292

The following BLAST results are available for this feature:

BLAST of PI0009742 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009742 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6M5	1.4e-24	46.40	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002...	[more]
A0A5D3DES7	1.8e-22	47.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U806	3.0e-22	50.44	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE...	[more]
A0A5D3CVL7	3.0e-22	50.44	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TZE0	5.7e-21	43.31	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00...	[more]

BLAST of PI0009742 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062900.1	3.0e-24	46.40	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK22187.1	3.6e-22	47.86	hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa]	[more]
KAA0049609.1	6.2e-22	50.44	transposase [Cucumis melo var. makuwa]	[more]
TYK15967.1	6.2e-22	50.44	hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]	[more]
KAA0048500.1	1.2e-20	43.31	protein MNN4-like [Cucumis melo var. makuwa] >TYK28291.1 protein MNN4-like [Cucu...	[more]

BLAST of PI0009742 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..263
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 291..317
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..263
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 298..317

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009742.1	PI0009742.1	mRNA