PI0009561 (gene) Melon (PI 482460) v1

Overview


Name	PI0009561
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr10: 3696222 .. 3697340 (+)
RNA-Seq Expression	PI0009561
Synteny	PI0009561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAATGTCCTCTTTCCTCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACTGTCCATTCAAATCTGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGTGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTTCAAAGAGCTTCCTTCAATTTCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTAGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTCCTGCTGTTGCTGCTAAGGGCAAGGGGAAGGCTAAGGTAGCCGACAAGGGGAAGTGCTTCCACTGCAATATGGATGGACATTGAAGAGAAACTGCCCCAAGTACCTTGCTGAGAAGAAGAAGGAAAAAGAAGGTAAATATGATTTACTTGTTTTAGAAACTTGTTTAGTGGAAAATGACCAAAATGCCTGGATACTTGATTTAGGAGCCACTAATCATGTTTGTTCTTCTTTACAGAAAACTAGTTCCTTCCAGCAGCTCGAGGAGGATGAAATGACGCTCAAGGTTGGAACGGGAGACGCCATTTCAGCTTGTGCAGTGGGAGATGTGAAGTTGTTTTTTAGAAATAGATATTTAATCTTAGACAATTTGTATATAGTTCCTAAGATTAAAAGGAATCTTGTATCTATTTCTTGTCTTCTTGAACAATGTTACTCTATAAATTTTTCTTTAAATGAAGCGTTCATTTCTAAGAATGGTGTACACATTTGTTCAGCTAAGTTAG

mRNA sequence

ATGGAGGAATGTCCTCTTTCCTCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACTGTCCATTCAAATCTGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGTGGTCATTGACGAGCAAAGTCAGCGTTCATTTCTAAGAATGGTGTACACATTTGTTCAGCTAAGTTAG

Coding sequence (CDS)

ATGGAGGAATGTCCTCTTTCCTCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACTGTCCATTCAAATCTGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGTGGTCATTGACGAGCAAAGTCAGCGTTCATTTCTAAGAATGGTGTACACATTTGTTCAGCTAAGTTAG

Protein sequence

MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQRSFLRMVYTFVQLS

Homology

[Close]

BLAST of PI0009561 vs. ExPASy TrEMBL
Match: A0A5D3DDU7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G00010 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.4e-42
Identity = 91/119 (76.47%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           M+ECP    +NASQ+V+D YDRWTKAN+KARVYILASMSD+LSKKHE MVTA QIMDSL+
Sbjct: 50  MDECPPFPTQNASQSVKDTYDRWTKANDKARVYILASMSDILSKKHEIMVTACQIMDSLR 109

Query: 61  EMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQRSFL 120
           EMFGQ SIQI  +AIKYVYNA MKEGQSVR+HV+DM+V FNVAE NGVV DE+SQ SF+
Sbjct: 110 EMFGQSSIQIKQDAIKYVYNAHMKEGQSVRDHVIDMIVHFNVAEMNGVVFDEKSQMSFI 168

[Close]

BLAST of PI0009561 vs. ExPASy TrEMBL
Match: A0A5A7TIU9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00990 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.5e-41
Identity = 89/119 (74.79%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           MEECP    +NASQ+V+DAYD W KAN++AR+YILASMSD+LSKKHE MVTARQIMDSL+
Sbjct: 13  MEECPPFPTQNASQSVKDAYDCWIKANDEARLYILASMSDILSKKHEIMVTARQIMDSLR 72

Query: 61  EMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQRSFL 120
           EMFGQ SIQI  EAIKY+YNARMKEGQSVREHVL+M+V FNVA+ NG V DE+SQ S++
Sbjct: 73  EMFGQSSIQIKQEAIKYLYNARMKEGQSVREHVLNMIVNFNVAQMNGAVFDEKSQVSYI 131

[Close]

BLAST of PI0009561 vs. ExPASy TrEMBL
Match: A0A5D3DZL3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002420 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.7e-40
Identity = 87/119 (73.11%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           MEECP    +NASQ+V+DAYDRWTKAN+KA +YILASMSD+LSKKHE MVTARQI DSL+
Sbjct: 13  MEECPHFPSQNASQSVKDAYDRWTKANDKAHLYILASMSDILSKKHEIMVTARQIKDSLR 72

Query: 61  EMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQRSFL 120
           EMFGQ SIQI  EAIKYVYNARMK+GQSV+EH+L+M+V FNV + NG V DE+SQ S++
Sbjct: 73  EMFGQPSIQIKQEAIKYVYNARMKKGQSVKEHILNMIVNFNVVQMNGAVFDEKSQVSYI 131

[Close]

BLAST of PI0009561 vs. ExPASy TrEMBL
Match: A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.7e-40
Identity = 88/119 (73.95%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           MEECP    +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+
Sbjct: 40  MEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLR 99

Query: 61  EMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQRSFL 120
           EMFGQ SIQI  EAIKYVYNARMKEGQSVREHVL M+V FNVAE N  + DE+SQ S++
Sbjct: 100 EMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYI 158

[Close]

BLAST of PI0009561 vs. ExPASy TrEMBL
Match: A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.7e-40
Identity = 88/119 (73.95%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           MEECP    +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+
Sbjct: 40  MEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLR 99

Query: 61  EMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQRSFL 120
           EMFGQ SIQI  EAIKYVYNARMKEGQSVREHVL M+V FNVAE N  + DE+SQ S++
Sbjct: 100 EMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYI 158

[Close]

BLAST of PI0009561 vs. NCBI nr
Match: TYK21841.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 2.9e-42
Identity = 91/119 (76.47%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           M+ECP    +NASQ+V+D YDRWTKAN+KARVYILASMSD+LSKKHE MVTA QIMDSL+
Sbjct: 50  MDECPPFPTQNASQSVKDTYDRWTKANDKARVYILASMSDILSKKHEIMVTACQIMDSLR 109

Query: 61  EMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQRSFL 120
           EMFGQ SIQI  +AIKYVYNA MKEGQSVR+HV+DM+V FNVAE NGVV DE+SQ SF+
Sbjct: 110 EMFGQSSIQIKQDAIKYVYNAHMKEGQSVRDHVIDMIVHFNVAEMNGVVFDEKSQMSFI 168

[Close]

BLAST of PI0009561 vs. NCBI nr
Match: KAA0041279.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK16077.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.2 bits (448), Expect = 9.3e-41
Identity = 89/119 (74.79%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           MEECP    +NASQ+V+DAYD W KAN++AR+YILASMSD+LSKKHE MVTARQIMDSL+
Sbjct: 13  MEECPPFPTQNASQSVKDAYDCWIKANDEARLYILASMSDILSKKHEIMVTARQIMDSLR 72

Query: 61  EMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQRSFL 120
           EMFGQ SIQI  EAIKY+YNARMKEGQSVREHVL+M+V FNVA+ NG V DE+SQ S++
Sbjct: 73  EMFGQSSIQIKQEAIKYLYNARMKEGQSVREHVLNMIVNFNVAQMNGAVFDEKSQVSYI 131

[Close]

BLAST of PI0009561 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 3.5e-40
Identity = 88/119 (73.95%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           MEECP    +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+
Sbjct: 40  MEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLR 99

Query: 61  EMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQRSFL 120
           EMFGQ SIQI  EAIKYVYNARMKEGQSVREHVL M+V FNVAE N  + DE+SQ S++
Sbjct: 100 EMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYI 158

[Close]

BLAST of PI0009561 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 3.5e-40
Identity = 88/119 (73.95%), Postives = 102/119 (85.71%), Query Frame = 0


Query: 1   MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           MEECP    +NASQ+V+DAYD WTKAN+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+
Sbjct: 40  MEECPPFPTQNASQSVKDAYDHWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLR 99

Query: 61  EMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQRSFL 120
           EMFGQ SIQI  EAIKYVYNARMKEGQSVREHVL M+V FNVAE N  + DE+SQ S++
Sbjct: 100 EMFGQPSIQIKQEAIKYVYNARMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYI 158

[Close]

BLAST of PI0009561 vs. NCBI nr
Match: KAA0056413.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK29106.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 3.5e-40
Identity = 87/119 (73.11%), Postives = 103/119 (86.55%), Query Frame = 0


Query: 1   MEECPLSSVRNASQTVRDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQ 60
           MEECP    +NASQ+V+DAYDRWTKAN+KA +YILASMSD+LSKKHE MVTARQI DSL+
Sbjct: 13  MEECPHFPSQNASQSVKDAYDRWTKANDKAHLYILASMSDILSKKHEIMVTARQIKDSLR 72

Query: 61  EMFGQLSIQIWHEAIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGVVIDEQSQRSFL 120
           EMFGQ SIQI  EAIKYVYNARMK+GQSV+EH+L+M+V FNV + NG V DE+SQ S++
Sbjct: 73  EMFGQPSIQIKQEAIKYVYNARMKKGQSVKEHILNMIVNFNVVQMNGAVFDEKSQVSYI 131

The following BLAST results are available for this feature:

BLAST of PI0009561 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DDU7	1.4e-42	76.47	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G000...	[more]
A0A5A7TIU9	4.5e-41	74.79	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00990...	[more]
A0A5D3DZL3	1.7e-40	73.11	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G0024...	[more]
A0A5D3D0D9	1.7e-40	73.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210...	[more]
A0A5A7VA67	1.7e-40	73.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011...	[more]

BLAST of PI0009561 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21841.1	2.9e-42	76.47	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0041279.1	9.3e-41	74.79	gag/pol protein [Cucumis melo var. makuwa] >TYK16077.1 gag/pol protein [Cucumis ...	[more]
KAA0063887.1	3.5e-40	73.95	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	3.5e-40	73.95	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0056413.1	3.5e-40	73.11	gag/pol protein [Cucumis melo var. makuwa] >TYK29106.1 gag/pol protein [Cucumis ...	[more]

BLAST of PI0009561 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 23..115 e-value: 1.5E-9 score: 37.7
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 11..117
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 11..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009561.1	PI0009561.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding