Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCTCAGCTTCAAAATGTCAACGAACATCAATTAGCTGGAAAGGCCTATGGTTCACGGTATGTTGTTTAAATTTCATTTACATTAACCAAAAGCTTTTTGTAGGACTAATTATAGATAATCTTAAATCTAAATATTAATTTAATAATATAGATGGAGAAATCAATTTCGTGTGATTAGGTCTGCTACACATGTTGTCTCAGTATAGGTACATGTTTGACCTTTCATATTATTTGTTTTAACATAATATGTTATATTTCAGATTATTTGGGAGCTATACAAAACTGTCATGGACAGTTTGCCCAATTTCTGTACCAAGGGTAAAGACATATGGCGGACGGTTAATCCACTCATATGTTTTCATATTGGTGAGTGACATCATCCTGATAGAACAATTAGAAAATTTGGTCTCAAACAAGATGTTCCACTGGATTGTAATACTAAGCCACTATTGCATAATATCGACTTGAGAACTGCGGATTGGTCAGATAGAGTTGCACGTCCGATGATGCGATGGCTAAATCGCAGAAGATTTATTGCTATGAGGCCTACAATTAATCAATTCGATATGGATATAACTAAGGAATACATCCACTGGTATAAAAATATTACAAGGCTTTACATTACTAGACTGGGAGCAGTTGGGTCATCTGGTACATGTTTAAATATTGTATAATTATTTTAGATATAATTTATTTTGAATACTTTATAATTTATTTTAATATTTCACAGAGATTGAACAATAGCAGACTTCGTGATGTGGCAGATGATCCACAACAGGTTCTTAATATATGCAACGAAAACGAGCGGTACATGGAGAATATACATTATATGTATGATGTACCCATTGTACCAGCACCAGCCCAAAGAAGACATGCTCGAGTGCAAGAGCCTAAGTTTGACGAGGTTGACCATCACGTGGAAGAAGTGCCTCCTGTGACACAAACACAAAATAAAGTTGGTTATGTTATTCCAATGATGATGATGCCACTCTTTGGTACGAGCTATTATCCTAGTCAATTGTCATACTTTGGATCAAAATATTACAATTCAGAGGTCGGTTCATCATCGTCAAACTTTGGAACGGAATATTACGATTTAGGGACCGACCAATCATCTTCATACATGTATCGACATGGACGCGGTCGTGGAGAGCATAATGAATATTTATACTATGAAGTGCTTCCAGTGGTACCTGAACAAGTAGAGAACAAACAACAACCAGAGAATTAG
mRNA sequence
ATGGCTCCTCAGCTTCAAAATGTCAACGAACATCAATTAGCTGGAAAGGCCTATGGTTCACGATTATTTGGGAGCTATACAAAACTGTCATGGACAGTTTGCCCAATTTCTGTACCAAGGAGATTGAACAATAGCAGACTTCGTGATGTGGCAGATGATCCACAACAGGTTCTTAATATATGCAACGAAAACGAGCGGTACATGGAGAATATACATTATATGTATGATGTACCCATTGTACCAGCACCAGCCCAAAGAAGACATGCTCGAGTGCAAGAGCCTAAGTTTGACGAGGTTGACCATCACGTGGAAGAAGTGCCTCCTGTGACACAAACACAAAATAAAGTTGGTTATGTTATTCCAATGATGATGATGCCACTCTTTGGTACGAGCTATTATCCTAGTCAATTGTCATACTTTGGATCAAAATATTACAATTCAGAGGTCGGTTCATCATCGTCAAACTTTGGAACGGAATATTACGATTTAGGGACCGACCAATCATCTTCATACATGTATCGACATGGACGCGGTCGTGGAGAGCATAATGAATATTTATACTATGAAGTGCTTCCAGTGGTACCTGAACAAGTAGAGAACAAACAACAACCAGAGAATTAG
Coding sequence (CDS)
ATGGCTCCTCAGCTTCAAAATGTCAACGAACATCAATTAGCTGGAAAGGCCTATGGTTCACGATTATTTGGGAGCTATACAAAACTGTCATGGACAGTTTGCCCAATTTCTGTACCAAGGAGATTGAACAATAGCAGACTTCGTGATGTGGCAGATGATCCACAACAGGTTCTTAATATATGCAACGAAAACGAGCGGTACATGGAGAATATACATTATATGTATGATGTACCCATTGTACCAGCACCAGCCCAAAGAAGACATGCTCGAGTGCAAGAGCCTAAGTTTGACGAGGTTGACCATCACGTGGAAGAAGTGCCTCCTGTGACACAAACACAAAATAAAGTTGGTTATGTTATTCCAATGATGATGATGCCACTCTTTGGTACGAGCTATTATCCTAGTCAATTGTCATACTTTGGATCAAAATATTACAATTCAGAGGTCGGTTCATCATCGTCAAACTTTGGAACGGAATATTACGATTTAGGGACCGACCAATCATCTTCATACATGTATCGACATGGACGCGGTCGTGGAGAGCATAATGAATATTTATACTATGAAGTGCTTCCAGTGGTACCTGAACAAGTAGAGAACAAACAACAACCAGAGAATTAG
Protein sequence
MAPQLQNVNEHQLAGKAYGSRLFGSYTKLSWTVCPISVPRRLNNSRLRDVADDPQQVLNICNENERYMENIHYMYDVPIVPAPAQRRHARVQEPKFDEVDHHVEEVPPVTQTQNKVGYVIPMMMMPLFGTSYYPSQLSYFGSKYYNSEVGSSSSNFGTEYYDLGTDQSSSYMYRHGRGRGEHNEYLYYEVLPVVPEQVENKQQPEN
Homology
BLAST of PI0009500 vs. ExPASy TrEMBL
Match:
A0A5A7VIP6 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G001330 PE=4 SV=1)
HSP 1 Score: 233.0 bits (593), Expect = 1.1e-57
Identity = 120/170 (70.59%), Postives = 135/170 (79.41%), Query Frame = 0
Query: 41 RLNNSRLRDVADDPQQVLNICNENERYMENIHYMYDVPIVPAPAQRRHARVQEP-KFDEV 100
R NN RLR+VADDPQQVLNICN+NE+YMENIHYMYDVPIVPAP QRR VQEP + +EV
Sbjct: 415 RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 474
Query: 101 DHHVEEVPPVTQTQNKVGYVIPMMMMPLFGTSYYPS---QLSYFGSKYYNSEVGSSSSNF 160
D H EEVPP+TQTQ++ YV P+MMMP FGT+YY S Q S FG YYNSE G SS++F
Sbjct: 475 DQHGEEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDF 534
Query: 161 GTEYYDLGTDQSSSYMYRHGRGRGEHNEYLYYEVLPVVPEQVENKQQPEN 207
G +YYDLG+D SSSYM+ HGRGRGEHNEYLYYEV VPEQ QQ EN
Sbjct: 535 GQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQEN 584
BLAST of PI0009500 vs. ExPASy TrEMBL
Match:
A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)
HSP 1 Score: 229.2 bits (583), Expect = 1.6e-56
Identity = 117/170 (68.82%), Postives = 136/170 (80.00%), Query Frame = 0
Query: 41 RLNNSRLRDVADDPQQVLNICNENERYMENIHYMYDVPIVPAPAQRRHARVQEP-KFDEV 100
R NN RLR+VADDPQQVLNICN+NE+YMENIHYMYDVPIVPAP QRR VQEP + +EV
Sbjct: 1063 RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 1122
Query: 101 DHHVEEVPPVTQTQNKVGYVIPMMMMPLFGTSYYPS---QLSYFGSKYYNSEVGSSSSNF 160
D H +EVPP+TQTQ++ YV P+MMMP FGT+YY S Q S FG YYNS+ G SS++F
Sbjct: 1123 DQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDF 1182
Query: 161 GTEYYDLGTDQSSSYMYRHGRGRGEHNEYLYYEVLPVVPEQVENKQQPEN 207
G +YYDLG+D SSSYM+ HGRGRG+HNEYLYYEV VPEQ + QQ EN
Sbjct: 1183 GQQYYDLGSDPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQEN 1232
BLAST of PI0009500 vs. ExPASy TrEMBL
Match:
A0A5A7T598 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00500 PE=4 SV=1)
HSP 1 Score: 229.2 bits (583), Expect = 1.6e-56
Identity = 117/170 (68.82%), Postives = 136/170 (80.00%), Query Frame = 0
Query: 41 RLNNSRLRDVADDPQQVLNICNENERYMENIHYMYDVPIVPAPAQRRHARVQEP-KFDEV 100
R NN RLR+VADDPQQVLNICN+NE+YMENIHYMYDVPIVPAP QRR VQEP + +EV
Sbjct: 302 RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 361
Query: 101 DHHVEEVPPVTQTQNKVGYVIPMMMMPLFGTSYYPS---QLSYFGSKYYNSEVGSSSSNF 160
D H +EVPP+TQTQ++ YV P+MMMP FGT+YY S Q S FG YYNS+ G SS++F
Sbjct: 362 DQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDF 421
Query: 161 GTEYYDLGTDQSSSYMYRHGRGRGEHNEYLYYEVLPVVPEQVENKQQPEN 207
G +YYDLG+D SSSYM+ HGRGRG+HNEYLYYEV VPEQ + QQ EN
Sbjct: 422 GQQYYDLGSDPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQEN 471
BLAST of PI0009500 vs. ExPASy TrEMBL
Match:
A0A5A7U5S8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00410 PE=4 SV=1)
HSP 1 Score: 228.4 bits (581), Expect = 2.7e-56
Identity = 119/172 (69.19%), Postives = 137/172 (79.65%), Query Frame = 0
Query: 41 RLNNSRLRDVADDPQQVLNICNENERYMENIHYMYDVPIVPAPAQRRHARVQEP-KFDEV 100
R NN RLR+VADDPQQVLNICN+NE+YMENIHYMYDVPIVPAP QRR VQEP + +EV
Sbjct: 114 RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 173
Query: 101 DHHVEEVPPV--TQTQNKVGYVIPMMMMPLFGTSYYPS---QLSYFGSKYYNSEVGSSSS 160
D H EEVPP+ TQTQ++ YV P+MMMP FGT+YY S Q S FG YYNSE G SS+
Sbjct: 174 DQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSST 233
Query: 161 NFGTEYYDLGTDQSSSYMYRHGRGRGEHNEYLYYEVLPVVPEQVENKQQPEN 207
+FG +YYDLG+D SSSYM+ HGRGRGEHNEYLYYEV VP+Q + +QQ EN
Sbjct: 234 DFGQQYYDLGSDPSSSYMHDHGRGRGEHNEYLYYEVPAAVPKQSDEQQQQEN 285
BLAST of PI0009500 vs. ExPASy TrEMBL
Match:
A0A5A7UKC7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold222G001140 PE=4 SV=1)
HSP 1 Score: 228.4 bits (581), Expect = 2.7e-56
Identity = 118/170 (69.41%), Postives = 134/170 (78.82%), Query Frame = 0
Query: 41 RLNNSRLRDVADDPQQVLNICNENERYMENIHYMYDVPIVPAPAQRRHARVQEP-KFDEV 100
R NN RL +VADDPQQVLNICN NE+YMENIHYMYDVPIVPAP QRR VQEP + +EV
Sbjct: 572 RSNNIRLWNVADDPQQVLNICNNNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 631
Query: 101 DHHVEEVPPVTQTQNKVGYVIPMMMMPLFGTSYYPS---QLSYFGSKYYNSEVGSSSSNF 160
D H EEVPP+TQT+++ YV P+MMMP FGT+YY S Q S FG YYNSE G SS++F
Sbjct: 632 DQHGEEVPPMTQTKSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDF 691
Query: 161 GTEYYDLGTDQSSSYMYRHGRGRGEHNEYLYYEVLPVVPEQVENKQQPEN 207
G +YYDLG+D SSSYM+ HGRGRGEHNEYLYYEV VPEQ + QQ EN
Sbjct: 692 GQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSDELQQQEN 741
BLAST of PI0009500 vs. NCBI nr
Match:
KAA0067080.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 233.0 bits (593), Expect = 2.3e-57
Identity = 120/170 (70.59%), Postives = 135/170 (79.41%), Query Frame = 0
Query: 41 RLNNSRLRDVADDPQQVLNICNENERYMENIHYMYDVPIVPAPAQRRHARVQEP-KFDEV 100
R NN RLR+VADDPQQVLNICN+NE+YMENIHYMYDVPIVPAP QRR VQEP + +EV
Sbjct: 415 RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 474
Query: 101 DHHVEEVPPVTQTQNKVGYVIPMMMMPLFGTSYYPS---QLSYFGSKYYNSEVGSSSSNF 160
D H EEVPP+TQTQ++ YV P+MMMP FGT+YY S Q S FG YYNSE G SS++F
Sbjct: 475 DQHGEEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSEVGQSSDFGRGYYNSEAGQSSTDF 534
Query: 161 GTEYYDLGTDQSSSYMYRHGRGRGEHNEYLYYEVLPVVPEQVENKQQPEN 207
G +YYDLG+D SSSYM+ HGRGRGEHNEYLYYEV VPEQ QQ EN
Sbjct: 535 GQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSNELQQQEN 584
BLAST of PI0009500 vs. NCBI nr
Match:
KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 229.2 bits (583), Expect = 3.3e-56
Identity = 117/170 (68.82%), Postives = 136/170 (80.00%), Query Frame = 0
Query: 41 RLNNSRLRDVADDPQQVLNICNENERYMENIHYMYDVPIVPAPAQRRHARVQEP-KFDEV 100
R NN RLR+VADDPQQVLNICN+NE+YMENIHYMYDVPIVPAP QRR VQEP + +EV
Sbjct: 302 RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 361
Query: 101 DHHVEEVPPVTQTQNKVGYVIPMMMMPLFGTSYYPS---QLSYFGSKYYNSEVGSSSSNF 160
D H +EVPP+TQTQ++ YV P+MMMP FGT+YY S Q S FG YYNS+ G SS++F
Sbjct: 362 DQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDF 421
Query: 161 GTEYYDLGTDQSSSYMYRHGRGRGEHNEYLYYEVLPVVPEQVENKQQPEN 207
G +YYDLG+D SSSYM+ HGRGRG+HNEYLYYEV VPEQ + QQ EN
Sbjct: 422 GQQYYDLGSDPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQEN 471
BLAST of PI0009500 vs. NCBI nr
Match:
TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 229.2 bits (583), Expect = 3.3e-56
Identity = 117/170 (68.82%), Postives = 136/170 (80.00%), Query Frame = 0
Query: 41 RLNNSRLRDVADDPQQVLNICNENERYMENIHYMYDVPIVPAPAQRRHARVQEP-KFDEV 100
R NN RLR+VADDPQQVLNICN+NE+YMENIHYMYDVPIVPAP QRR VQEP + +EV
Sbjct: 1063 RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 1122
Query: 101 DHHVEEVPPVTQTQNKVGYVIPMMMMPLFGTSYYPS---QLSYFGSKYYNSEVGSSSSNF 160
D H +EVPP+TQTQ++ YV P+MMMP FGT+YY S Q S FG YYNS+ G SS++F
Sbjct: 1123 DQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSKAGQSSTDF 1182
Query: 161 GTEYYDLGTDQSSSYMYRHGRGRGEHNEYLYYEVLPVVPEQVENKQQPEN 207
G +YYDLG+D SSSYM+ HGRGRG+HNEYLYYEV VPEQ + QQ EN
Sbjct: 1183 GQQYYDLGSDPSSSYMHGHGRGRGKHNEYLYYEVPAAVPEQSDELQQQEN 1232
BLAST of PI0009500 vs. NCBI nr
Match:
KAA0051233.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 228.4 bits (581), Expect = 5.6e-56
Identity = 119/172 (69.19%), Postives = 137/172 (79.65%), Query Frame = 0
Query: 41 RLNNSRLRDVADDPQQVLNICNENERYMENIHYMYDVPIVPAPAQRRHARVQEP-KFDEV 100
R NN RLR+VADDPQQVLNICN+NE+YMENIHYMYDVPIVPAP QRR VQEP + +EV
Sbjct: 114 RSNNIRLRNVADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 173
Query: 101 DHHVEEVPPV--TQTQNKVGYVIPMMMMPLFGTSYYPS---QLSYFGSKYYNSEVGSSSS 160
D H EEVPP+ TQTQ++ YV P+MMMP FGT+YY S Q S FG YYNSE G SS+
Sbjct: 174 DQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSST 233
Query: 161 NFGTEYYDLGTDQSSSYMYRHGRGRGEHNEYLYYEVLPVVPEQVENKQQPEN 207
+FG +YYDLG+D SSSYM+ HGRGRGEHNEYLYYEV VP+Q + +QQ EN
Sbjct: 234 DFGQQYYDLGSDPSSSYMHDHGRGRGEHNEYLYYEVPAAVPKQSDEQQQQEN 285
BLAST of PI0009500 vs. NCBI nr
Match:
KAA0055624.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 228.4 bits (581), Expect = 5.6e-56
Identity = 118/170 (69.41%), Postives = 134/170 (78.82%), Query Frame = 0
Query: 41 RLNNSRLRDVADDPQQVLNICNENERYMENIHYMYDVPIVPAPAQRRHARVQEP-KFDEV 100
R NN RL +VADDPQQVLNICN NE+YMENIHYMYDVPIVPAP QRR VQEP + +EV
Sbjct: 572 RSNNIRLWNVADDPQQVLNICNNNEQYMENIHYMYDVPIVPAPVQRRRPLVQEPDQLEEV 631
Query: 101 DHHVEEVPPVTQTQNKVGYVIPMMMMPLFGTSYYPS---QLSYFGSKYYNSEVGSSSSNF 160
D H EEVPP+TQT+++ YV P+MMMP FGT+YY S Q S FG YYNSE G SS++F
Sbjct: 632 DQHGEEVPPMTQTKSEHNYVSPVMMMPTFGTTYYDSGVGQSSDFGRGYYNSEAGQSSTDF 691
Query: 161 GTEYYDLGTDQSSSYMYRHGRGRGEHNEYLYYEVLPVVPEQVENKQQPEN 207
G +YYDLG+D SSSYM+ HGRGRGEHNEYLYYEV VPEQ + QQ EN
Sbjct: 692 GQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYEVPAAVPEQSDELQQQEN 741
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7VIP6 | 1.1e-57 | 70.59 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BAB0 | 1.6e-56 | 68.82 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7T598 | 1.6e-56 | 68.82 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7U5S8 | 2.7e-56 | 69.19 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5A7UKC7 | 2.7e-56 | 69.41 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0067080.1 | 2.3e-57 | 70.59 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0036767.1 | 3.3e-56 | 68.82 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| TYJ95836.1 | 3.3e-56 | 68.82 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0051233.1 | 5.6e-56 | 69.19 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0055624.1 | 5.6e-56 | 69.41 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
