PI0009461 (gene) Melon (PI 482460) v1

Overview


Name	PI0009461
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	pentatricopeptide repeat-containing protein At4g18975, chloroplastic
Location	chr01: 2218776 .. 2226812 (+)
RNA-Seq Expression	PI0009461
Synteny	PI0009461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCATCCGAAGGTTTCATCGAGCCGCGGCATGGGCGACGCCTCTGTTGCGACATCCAAATGTAAGTCTTCGAACTCGTTTTTCTCTTCATTTATCTACTCGAACCTTTGAATGCTTGGATTTCCGTAACTTCTTTATGGTTTCAATGTCTGTTAGTTGTCTTCATATGTTTTTCCATTTGCTAATTGGATTGGCAACAGGAAGTTCTTAGTTTCTCTTTGTTTCTGCCTAAATCCCTTGTATTATTATTTCTTTAATGTTTTCAACAAATGGCTAATGAAAGGACCAAGGGGAAGAACTGGATACCTCTTCTTACAACCCTGGACTTACATGTTCTATGTATTTTTTTATTTTTTATTTTTTATTCAGGAATTCTGGGTTGGTTTACGTAAATTTCAGTTAATCTCACGGGACAACCTGCTTTACGTTAGAGCATTTAGGTATCAAGGAAACAAGCAGGATATTATATTAAGTAGATGACCACAATGTTTGAAACTGAACTTATTTGGTTATTCTGTTCCTCCCCTAATAATGAGAATCTTGCATTAGGATTTTTGGATTACAATCATCTATTACTTTGGGAATAATTAACTGTGGCTAAAAGCTCTCCCCATCATTGATTTCTTATTTAACTATAGGGGGAGATCCTTGGTTTACCAAGAACTAACCCTTTGTTGGCCTAGTCTTATTTTGGAACCTCAAGACCTTGGTTGGATATACTTAGAGCAGAATTGCGTATTAAGTTTCTTTATAATATATTAACCTATGTCACCTTTCTCGGCCTTTTGGCTAAGATCAAGTGTATAATATATTAACCTATGCTAACTTGTTTCAGACTGCTTTTAAGGAATCTAAATTTTTCAATAAATGAGCACACAGGTAGGGCAAACCATGGAGCTTGGAGTCAGCAAGCTGCAAGTTGGGAGCTCTTGTTACTGCACAATGATACAAGATCAAATGTGTAAACAGCTTGCTGATAAAAGTAGAAAACATAAGGTATCTGAGATAAATTATATAGTCCGTGCTTAGAAAGTACGACATACTTCTGAAGTCTTCCGATGCCTCGTCAGAGTAAAATTATTTTGGTTGATATTTTAAAGATTTGACCTTTTTTTTCCCTTTTGGTATAACTGTTGTAGCTCTCACTATTAATATTGCATTATTTGGCAGCAGAAATGATATTAAGGTTGATAAAATATTATTTATGGAAGGGTTTGAAGATAGAAGAGAGTTCTATCATCTTTGTATTTGGACTTAGGAGGATAAAATAGCTCTGCGGGACTTGTCGAGTTTCTTGTGCTTTTAAATCTTTCTTGTAGTTGTTAGTCTCTTCTCTTATTGTGCATTAATATTACTTTTGTTTGGTTCTGTTTTTCCGGTCAAACATTACACAAATTGATATTCCTTGAGTATTAAACAGAGTAACAGTGACTATTGAAATTATTGTAAATTTATTTGTTGGTAAATTAGTTGACTGTTGAATTTTTTTACCAATGATCCAGGATGTTAACAATAGTAAAGCTTTGGGCCACATTTCAGAGCAAAATACTGGAGACGTTAGAAAGCACCAAATTGGGCAAAATGTTTCACGGAAAGAAAAATTAACTTTCTTGTAAATACGGCAAGTATAAATGGGAAAATATCTCCCATCTCTCTCTCTCTGTCTTCTCTCTCTCTCTCTCTGTTGGGGGGGGGGGGGGGGGTTGGTTTTAAATTGAGTCTCACTCATCATATATGTGTGTATTTTCATTTCATAGGAGGCTTTAGGAATTCTTTTGGAATAACTAATAGTCTAATTTGAAAGGGGGGAAAAAGCAAAGAACGGCACTTTGAGTATTCAAATGCTAAAACTGTTTGCATCGATAAGAGTTGCATACGTCAAACACTAATTGGCAAGACTTCTTGTTTCCTGTTAAAAGTAATAGCGATAAGCCTTTCAGATCTCCTATTTCCTTCTGTCACAAACCTAACACTTGATTGGACAGATCGGTTGGGTTCAACACATCTTCTTGCCTCATCATGATGTTCTCAATCAAAAGCTCTTTCTAGTTATTCTGTTCAGAACATTTGTCTGAAGTTTGAACTTGAATGCTTTCATTAATTCAGTTTAATTTATGTCTTGATGTCTTTGTAGTTCTTGGTATCTAGTATTTAGCACTAGACTCTTTCATTACGTCGATGGAAAGTATTGTATATCGTTCTTGTTAAATAAAAACCCTATTTCCTTCTGTCATCACTATATGTTAGTGATATATAATTAAATTTGTCTTCAACCACTAGTTTAGGCATTTGGTTGAATTGGTAATTTAAGATAGTATCAGAGCAGGTGTTCTAGGGAGGTCCTGTGTTCAAGCCCTTGTATTGTTATTTTCTCCCCAATTAAAATTGAATTCCACTTGTTGGATCTTTTAAATATTTCAACCCACAAATGAGGGGAGTGTTAGTGATATATAATTAAATTTGCCTTCAACCACCAACTTAAACTTTTGGTTGAATTGGTGATTTAAGACTATATTATTTACTTCAATACATCTTTTTGCTGTTTCTTATTCACATTGGGTAAGAATGGATCAAGAAATGGTCAGCAAGCTATGGTTGTGTCTAGATTGTTTGTTCCTAATAACTGGAAGTAAACTAAAGGTGCTTAGGTAGATCATTTTACCATCTCTATTTTGCTTAATCTTTCCATGGTGGATAAGGCTTTACTCAAACTTGATGATGGTAAGATCAGTGGGTGGGAAGCAGACCCCTCTAATCGATGTTCCCTTGTCTCTTCATCTTTTGTCCTTTAAAAATCATGTGGTGTTTTGGTTGAGAAGGTCCTTTTCCTTTTCATTTGGTTTCCATCGCTCTTCGTTCGATAGGGAACCGATGGATGTTGCTTTGTCCTTTCTTTATGGGATTGTTTTTAGACGGGAGAATTTGACTTGATTTTAGGGTGTGGAGTCCTAATCTTTTAAAGAATTTTGAGTGTAACTCCTTTTTTCATATGCTTAGTGCCCTCCCTTAGGCGAATTGGATTTTCTAGATTTTTTGGAGGATTAAGATTCCTAGGAAATCTAAGTTCAATTGGCAATTTTACATGGAAAAGTTAACACTTTCCTTTTTTTTTTTTTTAAAACAGAGGAACATATACATATATCAACAAGAAGAGAACAGCTAAAGGGCAAGGGGTTGAGGGGCCCTCCCCTCCCCCAATAAAAGAAACTAAACAATAAGAGCCTTCCAATTGTTAATAATCATGAGAAGGTTGTAATTACAAAATAACTTTGTGTAGTTTGTACACCACCAAGAGGCCGCATGCTGCATAAGAGCCCCAAAAAGAACCAAAAGAACTGAACTTATCCTCAAATACCCTAATATTTCTTTCATTCCAAAGATGCCACAAAAGCGTGCAGGTTGCACAACTCCATAAAATTCTTTCTTTTCCACAAAAGCTGCCCCCATTCAAACCCTCCTTTATTTGATCATCAATCCACAAGGGGAGACATCCATCCATCCACTAGTGTCCCTATGACGAACATAAAAGATACCAAACGTCTAGAAGAAGAACTCGCAAACTCATATCGCCAAAGCAAATGATCCAAAATTTTCCTCTGCCTTTCTACAAAGAATACAACATAAAGGACCAATATCCGGACGCACCCATCTTAACTAGGTTGACAATTCCTCAAGAGGGGCGAGTAAAGGCATCGAATGTATCAGCCATCAGAGAATTTACTTTTAGACTGACAAATAGTGCCGAGTACATCCCTAAATTGCTCAAAGTAATGCACCTGTTTGAATGTCGTGATAATTCAACCAAATAACTTTTAGACCGAGAGGGGAATCACCTGACTGTTCTTCACATCTTTTACCAAAAAAAGAACATTGTATTTTCAGACCAAATACAAAAATACCTCTTACAGACACAACTCCTTGTCTGCATAATGCAAATTAACAAAATAATCTTGGAAGTGAATAATCATCTTTTCTGAATATTTTAGCAATAGAATATAGATGAAGAAGTAAACAAAATTACTAAAATCTGACACGAAAACTGTGGCTGAAGGCTAAGAATGAAGGGATGGATAAGGGATGAGAGGAGAGAGAAGAGAGCATTTCCTTACCCCTTGCCCTCATTCCAGTTGCTTTGTTGCAGTCTTATGCTAAATTGCATTCTACAGGGAAGATGATTCGGGCATGATACAAGTTCAATATTTTCTTAACGGAAAGTATATTATATACTTTGCGCATACCAAGACTTCCTTTTTTGCAATGCTCTTGTTTCTTATGTATAGTTTTATGGTCAATATCAAACTTTTATTTATTTTTAAGTAATTATACGAACTTGGAGGTTTATGAGTTCTCTAAATGTTGCAGCTGCTTGATCTGAGAGATAGTAAGGAGGCTATTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAGCAAGATTTTCCAATAGCATCCCTTAAGCATGCATTGGCTGCCCTTGAGAAGGAACAACAGTGGCATAGAATTGTACAGGTACGAGTTGTACCAGCTATTCTTTATCTACTCTCTTTGCCCTTTACCCACTCTTCCCATTTTTTTTCCTGAAACTGAAAAAAGAACTCTTCATTGAAATAGATATGAAATGAAACGTAAGGAATCATCAGATGACGATGCATAAATAGACCAATGGTATTTGTAAAACAACAAACATAGTTAAGTGGAGATAAATGCACTCCAAGATCGTTTTTGTCTCCCATTGGTGTTCCATCTACATTCTTTTGAAGCTATTAGTGTGCAATTCTTCCACAGAAATTGGCTTCTTGTTGCAAAAGCATTATTTTGCTTGGTTATTCTCTCTCCTTTTTGGTTTGAGTTATAGAGGATTTTGGCTTGTTTGTATCGTTATTTTGATTGTCTTTTAGTCATTTTTCTCCTTATTGCTCATATTATATTACTCTTGTACTTTGAGCATTAGTCTCATTTATTATCAGTTAATAAAGAGGTTCGTTTCTGTTTTTAAAAAAAATTAATAATTTTGAAACATAGATTAGTTAAAAACTTCTACTTCTTTAGATTATTCGCATAAATTGAAGAGTTAAGCTGTGGAAACGTCAAGTTCAAAGATATTTCTTCAAAGCTTGTCGCTATCGAATTTAGACGAAGTAATGGGTAATTCTATAGGTCGTGATAGAGACAGATGCTGTTAGATTCATGTGAATGTCTTCCAGGTAATCAAATGGATGCTAAGCAAGGGCCAGGGGACCACAATGAATGTCTATGGGCAGTTAATACGGGCTTTAGATAAGGACCATCGAGCGGAAGAAGCACACAAATTTTGGGTCATGATGATTGGTTCGGATCTTCATTCAGTTCCTTGGCAATTGTGCAGAAGCATGATAGCGATTTACTACCGAAATAAAATGCTAGAAAACCTTGTAAAGGTATGATTCTCTTTTTTAGTTTTATTTAGTCTATTGCAGTGCTAGTGCCTTCTGGAAATGACTTTATGTTTGGGATATTGTTTTATTATTTATTTATTTTTTTTACTTTCTTATTAAACTATTTGGAATAGGAAATAAATTTTTCCTCCCATTTTAAAACAAAAAAATTTTAAATGTTTACATTAATGGAGATTTTTTTTTTATAAAGGAAACAAGCCTTTTCATTGATAAAATAAAAAGAGAATAATGCTCAAATTACAATGAAATGAAATAAAACAAACTATTCCAATTTCAAACATTTCAGCCAAAGACAACCAACATTATCTTCCTAATACTTAAAACTTCCTTGTAATGGACCAAGTTCTAATGCAGTGGCGAACTCTCGCTCTTTCCAAGCGTGTAATTATGCGACAATTCAAATTTGGTCCCCATCCTTTTGAGTGGTTGTCTAGAGAGTGTAGAGGCATGCACCGGAACCTTTGGAAAGAAATTTCGAAAGAGCTTCCTAAATTTTCTCCTTGGGTCCGTTGTGTGATGGGGGAGGGGAAAACTACTTGTTTTTGGGAGGATTTCTGGGTTGGGGATAAACCTCTTTGTGCCTCCTTTCCCACTTTGTATCATTTGACTTACCTCAAAAATCACTTCATCACTGACTTCTTAGTATGGTCGGGGAATTCATGTTCTTTTCACTTCGGTTTTAGTTGACACCTTACTGATAGGGAAACAATGGAGGTGGTTACCACTTACCCTCCTTTCCTTATTGGAGGATCACCACCTTCGTCAAGGTAGAAGGAATGTTAGAATATGGAGCCCTAATCCCATGAATGACTATTCTTGCAAATCTTTCTTTCAAACCTGGTGGATTCTTCCCATTCTAGTGAGTCGGTATTTTCAATTCTTTGGAGGATTAAGATTTCTAGAAAGGTGAGATTCTTTTCTTGGCAAGTGCTTCATGGTCATGCTAATACGTATGTCAGACTCGCTAGGGTTATGCCCTCGTTAGTTTGGCTCTTTTGCTGTGTTCTCTTTTACAAGTCAGCGGAAGACATAGACCATATCCTTTGAAGCTGTGATCATGCGAGTAATGTATGGGATTACTTTCCCCAGAGCAGTAGGTAATATGATTCAGGACTACCTCCTCAATTCGTTGGTTGGGGAGAAAGGCAAATTCTTTGGAATGCTACTGTCTGTGCAATCTTGTGGTTCTTATGGGGTGAACGGAATAATAGGACTTTTAGAGGTGTGGAGAGGGACTCTAAGGACCTTTGGTCTCTCGTTCGTTATCACGTTTCGCTTTGGGCTTCGTTATCAAAAACGTTTTGTAATTATTCTTTGGATCTTACTAACCTTAGCTGAGATCCTTTTTTGTAATGTGACTTTCTCAGGGCTTGGCTATTGCCGCCCTTGTAATTTCTTCATTATCTCTCAATGAAAGTGTCTTAAGATCTGAGCTAGAGTTCAATTTCTCAAGTGACGAATGGTAAATGATTATCACCAGCAGGATAAAAAATCAAGAAGGGCGCAATGTAAATAAAATATGGAAATAAACCAAGGAGCATTAGTCTCATACAAGCACAACAACCTAACGGCGGCTGCATGGCTCCTATGGTTGAAGAGACATTTTGATCCCTTTTAATTATTTTTAGGTTTCCTTGCCCTCTTGCGAAGCAAAACTTGATTTTACTAGGATTTCAATAAACAAGAAAGAGCACCAAAAATCTTTTTAGGAATGATCCAGTTGATATGGACCAGGGGTTCAGTTCTCTGTTGACCTTATCTTAGTTGCCAAAATAAAGCTTGACGTTATCCATTGAAACTTTATGTTCTTATGCTCCTTTGATAGTTCCCACTTGAAGAAAGGAGAAATAATGGACATTTGGAATCCAGTTGTTTTGTAATGTTAAGGGAGGACTATCACTCCAACAGCGCATCAAACAAAGGAAGAAAACAGGAAAAAAGGTCTTTTGTTTCCTTTGAATTAGAGCTCCAAATGCAATTTACTTCACAACTTCGTATAAAATCAAATTCCCTTGCAGGCCATATTTCAAACTTTGATATTAATCTCTAGATAGATATATTGTTATTGAACTCCATATTGGTTGAACCTTTACTTAGTCCGGTGGTCATCCCTCTCAAACTGAAATAAATGCCCCAAACAAGAAGAGAAATTCCTGTTTGTCTTAGAGGTAGGAATGGTCAACGAGAAAAGAGTGTGTTTGATAACCACTACAATTCACAATGATTGATTTACAGAATGGTATATATTGGTGCAAAATGGTTGATGTATTGATGAGTTTTATATTGTTGTGGATCTGATTGCATTACCCTCTATTCTCTGTTGATCTAAACTTGTCTTCTGCAATCAAAAGCTTTTTAAGGATCTCGAAGCCTTTGGACGTAAACCCCCAGAAAAATCAATAGTTCAGAGGGTAGCAGATGCTTGTGAGATGCTAGGCTTGCTTGAAGAGAAAGAGAGGGTACTCGTGAAGTACAAATACCTTTTTGATGACGAGCAAGGGTCCATGAAGAAATATAAGAGGATTTCGTTTGAAAAATCAAAGAGAAAACGAAAACTAACAAAGGGCACTGAAGACAATAGCAACCTCATGAAGTCTCAATGA

mRNA sequence

ATGCTCATCCGAAGGTTTCATCGAGCCGCGGCATGGGCGACGCCTCTGTTGCGACATCCAAATGTAGGGCAAACCATGGAGCTTGGAGTCAGCAAGCTGCAAGTTGGGAGCTCTTGTTACTGCACAATGATACAAGATCAAATGTGTAAACAGCTTGCTGATAAAAGTAGAAAACATAAGGATGTTAACAATAGTAAAGCTTTGGGCCACATTTCAGAGCAAAATACTGGAGACGTTAGAAAGCACCAAATTGGGCAAAATGTTTCACGGAAAGAAAAATTAACTTTCTTAGATAGTAAGGAGGCTATTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAGCAAGATTTTCCAATAGCATCCCTTAAGCATGCATTGGCTGCCCTTGAGAAGGAACAACAGTGGCATAGAATTGTACAGGTAATCAAATGGATGCTAAGCAAGGGCCAGGGGACCACAATGAATGTCTATGGGCAGTTAATACGGGCTTTAGATAAGGACCATCGAGCGGAAGAAGCACACAAATTTTGGGTCATGATGATTGGTTCGGATCTTCATTCAGTTCCTTGGCAATTGTGCAGAAGCATGATAGCGATTTACTACCGAAATAAAATGCTAGAAAACCTTGTAAAGCTTTTTAAGGATCTCGAAGCCTTTGGACGTAAACCCCCAGAAAAATCAATAGTTCAGAGGGTAGCAGATGCTTGTGAGATGCTAGGCTTGCTTGAAGAGAAAGAGAGGGTACTCGTGAAGTACAAATACCTTTTTGATGACGAGCAAGGGTCCATGAAGAAATATAAGAGGATTTCGTTTGAAAAATCAAAGAGAAAACGAAAACTAACAAAGGGCACTGAAGACAATAGCAACCTCATGAAGTCTCAATGA

Coding sequence (CDS)

ATGCTCATCCGAAGGTTTCATCGAGCCGCGGCATGGGCGACGCCTCTGTTGCGACATCCAAATGTAGGGCAAACCATGGAGCTTGGAGTCAGCAAGCTGCAAGTTGGGAGCTCTTGTTACTGCACAATGATACAAGATCAAATGTGTAAACAGCTTGCTGATAAAAGTAGAAAACATAAGGATGTTAACAATAGTAAAGCTTTGGGCCACATTTCAGAGCAAAATACTGGAGACGTTAGAAAGCACCAAATTGGGCAAAATGTTTCACGGAAAGAAAAATTAACTTTCTTAGATAGTAAGGAGGCTATTTATGGTGCTCTTGATGCCTGGGTTGCATGGGAGCAAGATTTTCCAATAGCATCCCTTAAGCATGCATTGGCTGCCCTTGAGAAGGAACAACAGTGGCATAGAATTGTACAGGTAATCAAATGGATGCTAAGCAAGGGCCAGGGGACCACAATGAATGTCTATGGGCAGTTAATACGGGCTTTAGATAAGGACCATCGAGCGGAAGAAGCACACAAATTTTGGGTCATGATGATTGGTTCGGATCTTCATTCAGTTCCTTGGCAATTGTGCAGAAGCATGATAGCGATTTACTACCGAAATAAAATGCTAGAAAACCTTGTAAAGCTTTTTAAGGATCTCGAAGCCTTTGGACGTAAACCCCCAGAAAAATCAATAGTTCAGAGGGTAGCAGATGCTTGTGAGATGCTAGGCTTGCTTGAAGAGAAAGAGAGGGTACTCGTGAAGTACAAATACCTTTTTGATGACGAGCAAGGGTCCATGAAGAAATATAAGAGGATTTCGTTTGAAAAATCAAAGAGAAAACGAAAACTAACAAAGGGCACTGAAGACAATAGCAACCTCATGAAGTCTCAATGA

Protein sequence

MLIRRFHRAAAWATPLLRHPNVGQTMELGVSKLQVGSSCYCTMIQDQMCKQLADKSRKHKDVNNSKALGHISEQNTGDVRKHQIGQNVSRKEKLTFLDSKEAIYGALDAWVAWEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDKDHRAEEAHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLEAFGRKPPEKSIVQRVADACEMLGLLEEKERVLVKYKYLFDDEQGSMKKYKRISFEKSKRKRKLTKGTEDNSNLMKSQ

Homology

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BLAST of PI0009461 vs. ExPASy Swiss-Prot
Match: Q2V3H0 (Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g18975 PE=2 SV=2)

HSP 1 Score: 140.2 bits (352), Expect = 3.7e-32
Identity = 74/174 (42.53%), Postives = 107/174 (61.49%), Query Frame = 0


Query: 98  DSKEAIYGALDAWVAWEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVY 157
           + KEA+YGAL+ WVAWE +FPI +   AL  L K  QWHR++Q+ KWMLSKGQG TM  Y
Sbjct: 110 NEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTY 169

Query: 158 GQLIRALDKDHRAEEAHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLE 217
             L+ A D D RA+EA   W M++ +   S+P +L   MIA+Y  + + + ++++F D+E
Sbjct: 170 DILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADME 229

Query: 218 AFGRKPPEKSIVQRVADACEMLGLLEEKE----RVLVKYKYL-FDDEQGSMKKY 267
                P E S  +RVA A   L   E ++    R L +YKY+ F+ E+  +K+Y
Sbjct: 230 ELKVSPDEDS-ARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRVKRY 282

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BLAST of PI0009461 vs. ExPASy Swiss-Prot
Match: Q8LG95 (Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX=3702 GN=EMB1417 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-29
Identity = 64/153 (41.83%), Postives = 95/153 (62.09%), Query Frame = 0


Query: 100 KEAIYGALDAWVAWEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQ 159
           KE +YGALD+++AWE +FP+  +K AL  LE E++W +I+QV KWMLSKGQG TM  Y  
Sbjct: 72  KEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTYFS 131

Query: 160 LIRALDKDHRAEEAHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLEAF 219
           L+ AL +D+R +EA + W  +    L   P +    MI+IYY+  M + L ++F D+E  
Sbjct: 132 LLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFADMEEL 191

Query: 220 GRKPPEKSIVQRVADACEMLGLLEEKERVLVKY 253
           G K P  +IV  V      L + ++ E+++ KY
Sbjct: 192 GVK-PNVAIVSMVGKVFVKLEMKDKYEKLMKKY 223

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BLAST of PI0009461 vs. ExPASy TrEMBL
Match: A0A1S3C174 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495459 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 5.8e-145
Identity = 262/302 (86.75%), Postives = 282/302 (93.38%), Query Frame = 0


Query: 1   MLIRRFHRAAAWATPLLRHPNVGQTMELGVSKLQVGSSCYCTMIQDQMCKQLADKSRKHK 60
           MLIRRF+RAAAWATPLLRHP VG+TMELGVS+LQVG S YCTMIQDQM KQLADK RK+K
Sbjct: 1   MLIRRFYRAAAWATPLLRHPTVGKTMELGVSRLQVGCSWYCTMIQDQMYKQLADKDRKNK 60

Query: 61  DVNNSKALGHISEQNTGDVRKHQIGQNVSRKEKLTFL--------DSKEAIYGALDAWVA 120
           DV+NSKALGHISEQN GD+RKH+IG+NVSRK+K++FL        DSKEA+YGALDAWVA
Sbjct: 61  DVDNSKALGHISEQNIGDIRKHKIGENVSRKDKISFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDKDHRAEE 180
           WEQDFPIASLKH LAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALD DHRAEE
Sbjct: 121 WEQDFPIASLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLEAFGRKPPEKSIVQRV 240
           AHKFWVM IGSDLHSVPWQLCRSMIAIYYRNKMLE+LVKLFKDLEAFGRKPP+KSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMIAIYYRNKMLEDLVKLFKDLEAFGRKPPDKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLFDDEQGSMKKYKRISFEKSKRKRKLTKGTEDNSNLMK 295
           ADACEMLGLLEEKERVLVKYKYLFD++Q SMKKYKR+SFEK KRKRK TKG+EDNSNL+K
Sbjct: 241 ADACEMLGLLEEKERVLVKYKYLFDEKQESMKKYKRVSFEKPKRKRKSTKGSEDNSNLVK 300

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BLAST of PI0009461 vs. ExPASy TrEMBL
Match: A0A6J1HUZ4 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467059 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.9e-128
Identity = 238/301 (79.07%), Postives = 258/301 (85.71%), Query Frame = 0


Query: 1   MLIRRFHRAAAWATPLLRHPNVGQTMELGVSKLQVGSSCYCTMIQDQMCKQLADKSRKHK 60
           MLIRRFHRAA WATPLLR   VGQ MELGV+KLQ+G+SCYCTM+Q+QM K+ ADK    K
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQVMELGVNKLQIGNSCYCTMLQNQMPKRFADKDMTDK 60

Query: 61  DVNNSKALGHISEQNTGDVRKHQIGQNVSRKEKLTFL--------DSKEAIYGALDAWVA 120
           DVNNSK L   SE+N GD+RKHQIG+NVSRK+K+ FL        DSKEA+YGALDAWVA
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKINFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDKDHRAEE 180
           WEQDFPIASLKHALA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALD DHRAEE
Sbjct: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLEAFGRKPPEKSIVQRV 240
           AHKFWVM IGSDLHSVPWQLCRSMI+IYYRNKMLE+LVKLFKDLEAFGRKPPEKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLFDDE-QGSMKKYKRISFEKSKRKRKLTKGTEDNSNLM 293
           ADACEMLGL+EEKERVLVKY YLF DE +GS+KKY        K KRK TKG +DNS+LM
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKY--------KGKRKSTKGNQDNSDLM 293

[Close]

BLAST of PI0009461 vs. ExPASy TrEMBL
Match: A0A6J1HGC4 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463832 PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 5.5e-127
Identity = 236/301 (78.41%), Postives = 257/301 (85.38%), Query Frame = 0


Query: 1   MLIRRFHRAAAWATPLLRHPNVGQTMELGVSKLQVGSSCYCTMIQDQMCKQLADKSRKHK 60
           MLIRRFHRAA WATPLLR   VGQ MELGV+KLQ+G+SCYCTM+Q+QM K+  DK    K
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFGDKDMTDK 60

Query: 61  DVNNSKALGHISEQNTGDVRKHQIGQNVSRKEKLTFL--------DSKEAIYGALDAWVA 120
           DVNNSK L   SE+N GD+RKHQIG+NVSRK+K+ FL        DSKEA+YGALDAWVA
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDKDHRAEE 180
           WEQDFPIASLKHALA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALD DHRAEE
Sbjct: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLEAFGRKPPEKSIVQRV 240
           AHKFWVM IGSDLHSVPWQLCRSMI+IYYRNKMLE+LVKLFK+LEAFGRKPPEKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKNLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLFDDE-QGSMKKYKRISFEKSKRKRKLTKGTEDNSNLM 293
           ADACEMLGL+EEKERVLVKY YLF DE +GS+KKY        K KRK TKG +DNS+LM
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKY--------KGKRKSTKGNQDNSDLM 293

[Close]

BLAST of PI0009461 vs. ExPASy TrEMBL
Match: A0A6J1DNN5 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 OS=Momordica charantia OX=3673 GN=LOC111021690 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 7.9e-126
Identity = 233/303 (76.90%), Postives = 260/303 (85.81%), Query Frame = 0


Query: 1   MLIRRFHRAAAWATPLLRHPNVGQTMELGVSKLQVGSSCYCTMIQDQMCKQLADKSRKHK 60
           ML+RRFHRA  W TPLLR    GQ M+LGVS+LQVG+SCYCTM+Q QMC+QLAD+  K+K
Sbjct: 1   MLVRRFHRATTWVTPLLRDLTAGQIMDLGVSRLQVGNSCYCTMVQAQMCQQLADRDMKNK 60

Query: 61  DVNNSKALGHISEQNTGDVRKHQIGQNVSRKEKLTFL--------DSKEAIYGALDAWVA 120
           DVNNSKAL   SEQN GD+RKHQIG+NVSRK+K+ FL         SKEA+YGALDAWVA
Sbjct: 61  DVNNSKALCQRSEQNDGDMRKHQIGENVSRKDKINFLVATLVDLRGSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDKDHRAEE 180
           WEQ+FPIASLK  LA LEKEQQWHR+VQVIKWMLSKGQGTTM VYGQLIRALD DHRAEE
Sbjct: 121 WEQNFPIASLKQVLAVLEKEQQWHRVVQVIKWMLSKGQGTTMRVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLEAFGRKPPEKSIVQRV 240
           +HKFWVM IG+DLHSVPWQLCRSMI+IYYRNKML+NLVKLFKDLEAFGRKPPEKSIVQRV
Sbjct: 181 SHKFWVMKIGADLHSVPWQLCRSMISIYYRNKMLDNLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLFDDE-QGSMKKYKRISFEKSKRKRKLTKGTEDNSNLM 295
           ADA EMLGL EEKERVL KYK LF DE +G ++KY +ISFEKSKR+RKLTK ++DN +L 
Sbjct: 241 ADAYEMLGLHEEKERVLEKYKDLFTDERKGPIQKYNKISFEKSKRRRKLTKVSKDNGDLR 300

[Close]

BLAST of PI0009461 vs. ExPASy TrEMBL
Match: A0A6J1DM10 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021690 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 7.9e-126
Identity = 233/303 (76.90%), Postives = 260/303 (85.81%), Query Frame = 0


Query: 1   MLIRRFHRAAAWATPLLRHPNVGQTMELGVSKLQVGSSCYCTMIQDQMCKQLADKSRKHK 60
           ML+RRFHRA  W TPLLR    GQ M+LGVS+LQVG+SCYCTM+Q QMC+QLAD+  K+K
Sbjct: 25  MLVRRFHRATTWVTPLLRDLTAGQIMDLGVSRLQVGNSCYCTMVQAQMCQQLADRDMKNK 84

Query: 61  DVNNSKALGHISEQNTGDVRKHQIGQNVSRKEKLTFL--------DSKEAIYGALDAWVA 120
           DVNNSKAL   SEQN GD+RKHQIG+NVSRK+K+ FL         SKEA+YGALDAWVA
Sbjct: 85  DVNNSKALCQRSEQNDGDMRKHQIGENVSRKDKINFLVATLVDLRGSKEAVYGALDAWVA 144

Query: 121 WEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDKDHRAEE 180
           WEQ+FPIASLK  LA LEKEQQWHR+VQVIKWMLSKGQGTTM VYGQLIRALD DHRAEE
Sbjct: 145 WEQNFPIASLKQVLAVLEKEQQWHRVVQVIKWMLSKGQGTTMRVYGQLIRALDMDHRAEE 204

Query: 181 AHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLEAFGRKPPEKSIVQRV 240
           +HKFWVM IG+DLHSVPWQLCRSMI+IYYRNKML+NLVKLFKDLEAFGRKPPEKSIVQRV
Sbjct: 205 SHKFWVMKIGADLHSVPWQLCRSMISIYYRNKMLDNLVKLFKDLEAFGRKPPEKSIVQRV 264

Query: 241 ADACEMLGLLEEKERVLVKYKYLFDDE-QGSMKKYKRISFEKSKRKRKLTKGTEDNSNLM 295
           ADA EMLGL EEKERVL KYK LF DE +G ++KY +ISFEKSKR+RKLTK ++DN +L 
Sbjct: 265 ADAYEMLGLHEEKERVLEKYKDLFTDERKGPIQKYNKISFEKSKRRRKLTKVSKDNGDLR 324

[Close]

BLAST of PI0009461 vs. NCBI nr
Match: XP_004136857.2 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucumis sativus] >KAE8645790.1 hypothetical protein Csa_017311 [Cucumis sativus])

HSP 1 Score: 526.2 bits (1354), Expect = 1.9e-145
Identity = 261/302 (86.42%), Postives = 279/302 (92.38%), Query Frame = 0


Query: 1   MLIRRFHRAAAWATPLLRHPNVGQTMELGVSKLQVGSSCYCTMIQDQMCKQLADKSRKHK 60
           MLIRR HRAAAWATPLLRHP VGQTMELGVS+LQVGSSCYCT IQDQMC+QLADK RK K
Sbjct: 1   MLIRRIHRAAAWATPLLRHPTVGQTMELGVSRLQVGSSCYCTTIQDQMCQQLADKDRKDK 60

Query: 61  DVNNSKALGHISEQNTGDVRKHQIGQNVSRKEKLTFL--------DSKEAIYGALDAWVA 120
           DVN+SKALGHISEQN GD+RKHQIG+N+SRK+K+ FL        DSKEA+YGALDAWVA
Sbjct: 61  DVNSSKALGHISEQNIGDIRKHQIGKNISRKDKIHFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDKDHRAEE 180
           WEQDFPIA LKH LAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALD DHR EE
Sbjct: 121 WEQDFPIAPLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRGEE 180

Query: 181 AHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLEAFGRKPPEKSIVQRV 240
           AHKFWVM IGSDLHSVPWQ+CRSM+AIYYRNK LE+LVKLFKDLEAFGRKPP+KSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQVCRSMMAIYYRNKRLEDLVKLFKDLEAFGRKPPDKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLFDDEQGSMKKYKRISFEKSKRKRKLTKGTEDNSNLMK 295
           ADACEMLGLLEEKERVLVKYKYLFD+++G MKKYKRISFEKSKRKRK TKGTEDNSNL+K
Sbjct: 241 ADACEMLGLLEEKERVLVKYKYLFDEKEGPMKKYKRISFEKSKRKRKSTKGTEDNSNLVK 300

[Close]

BLAST of PI0009461 vs. NCBI nr
Match: XP_008455250.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucumis melo])

HSP 1 Score: 523.5 bits (1347), Expect = 1.2e-144
Identity = 262/302 (86.75%), Postives = 282/302 (93.38%), Query Frame = 0


Query: 1   MLIRRFHRAAAWATPLLRHPNVGQTMELGVSKLQVGSSCYCTMIQDQMCKQLADKSRKHK 60
           MLIRRF+RAAAWATPLLRHP VG+TMELGVS+LQVG S YCTMIQDQM KQLADK RK+K
Sbjct: 1   MLIRRFYRAAAWATPLLRHPTVGKTMELGVSRLQVGCSWYCTMIQDQMYKQLADKDRKNK 60

Query: 61  DVNNSKALGHISEQNTGDVRKHQIGQNVSRKEKLTFL--------DSKEAIYGALDAWVA 120
           DV+NSKALGHISEQN GD+RKH+IG+NVSRK+K++FL        DSKEA+YGALDAWVA
Sbjct: 61  DVDNSKALGHISEQNIGDIRKHKIGENVSRKDKISFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDKDHRAEE 180
           WEQDFPIASLKH LAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALD DHRAEE
Sbjct: 121 WEQDFPIASLKHVLAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLEAFGRKPPEKSIVQRV 240
           AHKFWVM IGSDLHSVPWQLCRSMIAIYYRNKMLE+LVKLFKDLEAFGRKPP+KSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMIAIYYRNKMLEDLVKLFKDLEAFGRKPPDKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLFDDEQGSMKKYKRISFEKSKRKRKLTKGTEDNSNLMK 295
           ADACEMLGLLEEKERVLVKYKYLFD++Q SMKKYKR+SFEK KRKRK TKG+EDNSNL+K
Sbjct: 241 ADACEMLGLLEEKERVLVKYKYLFDEKQESMKKYKRVSFEKPKRKRKSTKGSEDNSNLVK 300

[Close]

BLAST of PI0009461 vs. NCBI nr
Match: XP_038887984.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 497.3 bits (1279), Expect = 9.2e-137
Identity = 253/303 (83.50%), Postives = 268/303 (88.45%), Query Frame = 0


Query: 1   MLIRRFHRAAAWATPLLRHPNVGQTMELGVSKLQVGSSCYCTMIQDQMCKQLADKSRKHK 60
           ML+RRFHRA AWATPLLR   VGQ MELGVS+LQVGS CYCTMIQDQM KQLA K  K+K
Sbjct: 1   MLVRRFHRATAWATPLLRDLTVGQIMELGVSRLQVGSFCYCTMIQDQMSKQLAVKDIKNK 60

Query: 61  DVNNSKALGHISEQNTGDVRKHQIGQNVSRKEKLTFL--------DSKEAIYGALDAWVA 120
           D NNSKALG  SEQN GDVRKHQIG+NV RK+K+ FL        DSKEA+YGALDAWVA
Sbjct: 61  DFNNSKALGQTSEQNIGDVRKHQIGKNVPRKDKINFLVNTLLDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDKDHRAEE 180
           WEQDFPI SLKH L  LEKEQQWHR+VQVIKWMLSKGQGTTMNVYGQLIRALD DHRAEE
Sbjct: 121 WEQDFPIGSLKHVLTVLEKEQQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLEAFGRKPPEKSIVQRV 240
           AHKFWVM IGSDLHSVPWQLCRSMIAIYYRNKMLE+LVKLFKDLEAFGRKPPEKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMIAIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLFDDE-QGSMKKYKRISFEKSKRKRKLTKGTEDNSNLM 295
           ADACE+LGLLEEKERVL+KYKYLF DE +GS+KKYKR+SFEKSK KRK TK TEDNSNLM
Sbjct: 241 ADACEILGLLEEKERVLMKYKYLFTDEKEGSIKKYKRVSFEKSKGKRKSTKSTEDNSNLM 300

[Close]

BLAST of PI0009461 vs. NCBI nr
Match: XP_022967610.1 (pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 467.2 bits (1201), Expect = 1.0e-127
Identity = 238/301 (79.07%), Postives = 258/301 (85.71%), Query Frame = 0


Query: 1   MLIRRFHRAAAWATPLLRHPNVGQTMELGVSKLQVGSSCYCTMIQDQMCKQLADKSRKHK 60
           MLIRRFHRAA WATPLLR   VGQ MELGV+KLQ+G+SCYCTM+Q+QM K+ ADK    K
Sbjct: 1   MLIRRFHRAATWATPLLRDTTVGQVMELGVNKLQIGNSCYCTMLQNQMPKRFADKDMTDK 60

Query: 61  DVNNSKALGHISEQNTGDVRKHQIGQNVSRKEKLTFL--------DSKEAIYGALDAWVA 120
           DVNNSK L   SE+N GD+RKHQIG+NVSRK+K+ FL        DSKEA+YGALDAWVA
Sbjct: 61  DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKINFLVNTLMDLRDSKEAVYGALDAWVA 120

Query: 121 WEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDKDHRAEE 180
           WEQDFPIASLKHALA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALD DHRAEE
Sbjct: 121 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 180

Query: 181 AHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLEAFGRKPPEKSIVQRV 240
           AHKFWVM IGSDLHSVPWQLCRSMI+IYYRNKMLE+LVKLFKDLEAFGRKPPEKSIVQRV
Sbjct: 181 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 240

Query: 241 ADACEMLGLLEEKERVLVKYKYLFDDE-QGSMKKYKRISFEKSKRKRKLTKGTEDNSNLM 293
           ADACEMLGL+EEKERVLVKY YLF DE +GS+KKY        K KRK TKG +DNS+LM
Sbjct: 241 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKY--------KGKRKSTKGNQDNSDLM 293

[Close]

BLAST of PI0009461 vs. NCBI nr
Match: KAG6571702.1 (Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 466.1 bits (1198), Expect = 2.3e-127
Identity = 238/301 (79.07%), Postives = 257/301 (85.38%), Query Frame = 0


Query: 1    MLIRRFHRAAAWATPLLRHPNVGQTMELGVSKLQVGSSCYCTMIQDQMCKQLADKSRKHK 60
            MLIRRFHRAA WATPLLR   VGQ MELGV+KLQ+G+SCYCTM+Q+QM K+ ADK    K
Sbjct: 1376 MLIRRFHRAATWATPLLRDTTVGQIMELGVNKLQIGNSCYCTMLQNQMSKRFADKDMTDK 1435

Query: 61   DVNNSKALGHISEQNTGDVRKHQIGQNVSRKEKLTFL--------DSKEAIYGALDAWVA 120
            DVNNSK L   SE+N GD+RKHQIG+NVSRK+K+ FL        DSKEA+YGALDAWVA
Sbjct: 1436 DVNNSKPLYQTSERNIGDIRKHQIGENVSRKDKIDFLVNTLMDLRDSKEAVYGALDAWVA 1495

Query: 121  WEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVYGQLIRALDKDHRAEE 180
            WEQDFPIASLKHALA LEKE QWHR+VQVIKWMLSKGQGTTMNVYGQLIRALD DHRAEE
Sbjct: 1496 WEQDFPIASLKHALAVLEKENQWHRVVQVIKWMLSKGQGTTMNVYGQLIRALDMDHRAEE 1555

Query: 181  AHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLEAFGRKPPEKSIVQRV 240
            AHKFWVM IGSDLHSVPWQLCRSMI+IYYRNKMLE+LVKLFKDLEAFGRKPPEKSIVQRV
Sbjct: 1556 AHKFWVMKIGSDLHSVPWQLCRSMISIYYRNKMLEDLVKLFKDLEAFGRKPPEKSIVQRV 1615

Query: 241  ADACEMLGLLEEKERVLVKYKYLFDDE-QGSMKKYKRISFEKSKRKRKLTKGTEDNSNLM 293
            ADACEMLGL+EEKERVLVKY YLF DE +GS+KKY        K KRK TKG +DNS LM
Sbjct: 1616 ADACEMLGLVEEKERVLVKYNYLFTDEKKGSIKKY--------KGKRKSTKGNQDNSYLM 1668

[Close]

BLAST of PI0009461 vs. TAIR 10
Match: AT1G04590.1 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-69
Identity = 140/264 (53.03%), Postives = 181/264 (68.56%), Query Frame = 0


Query: 33  LQVGSSCYCTMIQDQMCKQLADKSRKHKDVNNSKALGHISEQNTGDVRKHQIGQNVSRKE 92
           L+V S  Y  +       +   K+   +D ++S   G     N  + RKHQIG+N+ +K+
Sbjct: 90  LRVQSMSYQFVADSHSSPKRIVKNEDEEDFSDSSKKG-----NAENPRKHQIGENIPKKD 149

Query: 93  KLTFL--------DSKEAIYGALDAWVAWEQDFPIASLKHALAALEKEQQWHRIVQVIKW 152
           K+ FL        D+KEA+YGALDAWVAWE++FPIASLK  +A+LEKE QWHR+VQVIKW
Sbjct: 150 KIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEKEHQWHRMVQVIKW 209

Query: 153 MLSKGQGTTMNVYGQLIRALDKDHRAEEAHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNK 212
           +LSKGQG TM  YGQLIRALD D RAEEAH  W   +G+DLHSVPWQLC  M+ IY+RN 
Sbjct: 210 ILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLCLQMMRIYFRNN 269

Query: 213 MLENLVKLFKDLEAFGRKPPEKSIVQRVADACEMLGLLEEKERVLVKYKYLFDDEQGSMK 272
           ML+ LVKLFKDLE++ RKPP+K IVQ VADA E+LG+L+EKERV+ KY +L      S  
Sbjct: 270 MLQELVKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVTKYSHLLLGTP-SDD 329

Query: 273 KYKRISFEKSKRKRKLTKGTEDNS 289
           K  R S +K K + ++ + T + +
Sbjct: 330 KPSRSSRKKKKPELRIPEATTEGA 347

[Close]

BLAST of PI0009461 vs. TAIR 10
Match: AT1G04590.2 (BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18975.4); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 255.4 bits (651), Expect = 5.7e-68
Identity = 140/267 (52.43%), Postives = 181/267 (67.79%), Query Frame = 0


Query: 33  LQVGSSCYCTMIQDQMCKQLADKSRKHKDVNNSKALGHISEQNTGDVRKHQIGQNVSRKE 92
           L+V S  Y  +       +   K+   +D ++S   G     N  + RKHQIG+N+ +K+
Sbjct: 90  LRVQSMSYQFVADSHSSPKRIVKNEDEEDFSDSSKKG-----NAENPRKHQIGENIPKKD 149

Query: 93  KLTFL--------DSKEAIYGALDAWVAWEQDFPIASLKHALAALEKEQQWHRIVQVIKW 152
           K+ FL        D+KEA+YGALDAWVAWE++FPIASLK  +A+LEKE QWHR+VQVIKW
Sbjct: 150 KIKFLVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEKEHQWHRMVQVIKW 209

Query: 153 MLSKGQGTTMNVYGQLIRALDKDHRAEEAHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNK 212
           +LSKGQG TM  YGQLIRALD D RAEEAH  W   +G+DLHSVPWQLC  M+ IY+RN 
Sbjct: 210 ILSKGQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLCLQMMRIYFRNN 269

Query: 213 MLENLV---KLFKDLEAFGRKPPEKSIVQRVADACEMLGLLEEKERVLVKYKYLFDDEQG 272
           ML+ LV   KLFKDLE++ RKPP+K IVQ VADA E+LG+L+EKERV+ KY +L      
Sbjct: 270 MLQELVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVTKYSHLLLGTP- 329

Query: 273 SMKKYKRISFEKSKRKRKLTKGTEDNS 289
           S  K  R S +K K + ++ + T + +
Sbjct: 330 SDDKPSRSSRKKKKPELRIPEATTEGA 350

[Close]

BLAST of PI0009461 vs. TAIR 10
Match: AT4G18975.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-33
Identity = 74/174 (42.53%), Postives = 107/174 (61.49%), Query Frame = 0


Query: 98  DSKEAIYGALDAWVAWEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVY 157
           + KEA+YGAL+ WVAWE +FPI +   AL  L K  QWHR++Q+ KWMLSKGQG TM  Y
Sbjct: 110 NEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTY 169

Query: 158 GQLIRALDKDHRAEEAHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLE 217
             L+ A D D RA+EA   W M++ +   S+P +L   MIA+Y  + + + ++++F D+E
Sbjct: 170 DILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADME 229

Query: 218 AFGRKPPEKSIVQRVADACEMLGLLEEKE----RVLVKYKYL-FDDEQGSMKKY 267
                P E S  +RVA A   L   E ++    R L +YKY+ F+ E+  +K+Y
Sbjct: 230 ELKVSPDEDS-ARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRVKRY 282

[Close]

BLAST of PI0009461 vs. TAIR 10
Match: AT4G18975.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-33
Identity = 74/174 (42.53%), Postives = 107/174 (61.49%), Query Frame = 0


Query: 98  DSKEAIYGALDAWVAWEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVY 157
           + KEA+YGAL+ WVAWE +FPI +   AL  L K  QWHR++Q+ KWMLSKGQG TM  Y
Sbjct: 83  NEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTY 142

Query: 158 GQLIRALDKDHRAEEAHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLE 217
             L+ A D D RA+EA   W M++ +   S+P +L   MIA+Y  + + + ++++F D+E
Sbjct: 143 DILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADME 202

Query: 218 AFGRKPPEKSIVQRVADACEMLGLLEEKE----RVLVKYKYL-FDDEQGSMKKY 267
                P E S  +RVA A   L   E ++    R L +YKY+ F+ E+  +K+Y
Sbjct: 203 ELKVSPDEDS-ARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRVKRY 255

[Close]

BLAST of PI0009461 vs. TAIR 10
Match: AT4G18975.3 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-33
Identity = 74/174 (42.53%), Postives = 107/174 (61.49%), Query Frame = 0


Query: 98  DSKEAIYGALDAWVAWEQDFPIASLKHALAALEKEQQWHRIVQVIKWMLSKGQGTTMNVY 157
           + KEA+YGAL+ WVAWE +FPI +   AL  L K  QWHR++Q+ KWMLSKGQG TM  Y
Sbjct: 110 NEKEAVYGALNKWVAWEVEFPIIAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTY 169

Query: 158 GQLIRALDKDHRAEEAHKFWVMMIGSDLHSVPWQLCRSMIAIYYRNKMLENLVKLFKDLE 217
             L+ A D D RA+EA   W M++ +   S+P +L   MIA+Y  + + + ++++F D+E
Sbjct: 170 DILLLAFDMDERADEAESLWNMILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADME 229

Query: 218 AFGRKPPEKSIVQRVADACEMLGLLEEKE----RVLVKYKYL-FDDEQGSMKKY 267
                P E S  +RVA A   L   E ++    R L +YKY+ F+ E+  +K+Y
Sbjct: 230 ELKVSPDEDS-ARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRVKRY 282

The following BLAST results are available for this feature:

BLAST of PI0009461 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2V3H0	3.7e-32	42.53	Pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Arabidop...	[more]
Q8LG95	1.7e-29	41.83	Pentatricopeptide repeat-containing protein At4g21190 OS=Arabidopsis thaliana OX...	[more]

BLAST of PI0009461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C174	5.8e-145	86.75	pentatricopeptide repeat-containing protein At4g18975, chloroplastic OS=Cucumis ...	[more]
A0A6J1HUZ4	4.9e-128	79.07	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
A0A6J1HGC4	5.5e-127	78.41	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
A0A6J1DNN5	7.9e-126	76.90	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X3 ...	[more]
A0A6J1DM10	7.9e-126	76.90	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]

BLAST of PI0009461 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136857.2	1.9e-145	86.42	pentatricopeptide repeat-containing protein At4g18975, chloroplastic [Cucumis sa...	[more]
XP_008455250.1	1.2e-144	86.75	PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic ...	[more]
XP_038887984.1	9.2e-137	83.50	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
XP_022967610.1	1.0e-127	79.07	pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 ...	[more]
KAG6571702.1	2.3e-127	79.07	Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argy...	[more]

BLAST of PI0009461 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04590.1	1.4e-69	53.03	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]
AT1G04590.2	5.7e-68	52.43	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) super...	[more]
AT4G18975.1	2.7e-33	42.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.2	2.7e-33	42.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18975.3	2.7e-33	42.53	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 90..262 e-value: 2.8E-10 score: 41.8
None	No IPR available	PANTHER	PTHR47603:SF1	PPR CONTAINING-LIKE PROTEIN	coord: 8..288
None	No IPR available	PANTHER	PTHR47603	PPR CONTAINING-LIKE PROTEIN	coord: 8..288

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009461.1	PI0009461.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding