PI0009339 (gene) Melon (PI 482460) v1

Overview


Name	PI0009339
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr01: 3789533 .. 3789816 (+)
RNA-Seq Expression	PI0009339
Synteny	PI0009339

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTATTCCAACTCCAAGCATTTTCCTTTTGTGACGATTCTTGTTTTCTCCATCATAGTCGTTGTTGTCCTGTCCTCAAAGTGGCAGCAAAAGACCTTTTACATGACGGCCGCGGCAGCTCCACCGACACCCCTGGCTGTGGAATTACTATAGATGCGGCGGGTACGGTGGAGGTGGAGGTGGAAATGGTTGCCCACACCGGTTGCTGTGGTGTCAATCGTGGTGGTCGATGCATCCAATGTTGCAACTATGCTAATGAAGTCACAAATGTGAAACCTTAA

mRNA sequence

ATGAATTATTCCAACTCCAAGCATTTTCCTTTTGTGACGATTCTTGTTTTCTCCATCATAGTCGTTGTTGTCCTGTCCTCAAAGTGCTCCACCGACACCCCTGGCTGTGGAATTACTATAGATGCGGCGGGTACGGTGGAGGTGGAGGTGGAAATGGTTGCCCACACCGGTTGCTGTGGTGTCAATCGTGGTGGTCGATGCATCCAATGTTGCAACTATGCTAATGAAGTCACAAATGTGAAACCTTAA

Coding sequence (CDS)

ATGAATTATTCCAACTCCAAGCATTTTCCTTTTGTGACGATTCTTGTTTTCTCCATCATAGTCGTTGTTGTCCTGTCCTCAAAGTGCTCCACCGACACCCCTGGCTGTGGAATTACTATAGATGCGGCGGGTACGGTGGAGGTGGAGGTGGAAATGGTTGCCCACACCGGTTGCTGTGGTGTCAATCGTGGTGGTCGATGCATCCAATGTTGCAACTATGCTAATGAAGTCACAAATGTGAAACCTTAA

Protein sequence

MNYSNSKHFPFVTILVFSIIVVVVLSSKCSTDTPGCGITIDAAGTVEVEVEMVAHTGCCGVNRGGRCIQCCNYANEVTNVKP

Homology

[Close]

BLAST of PI0009339 vs. ExPASy TrEMBL
Match: A0A5D3BTN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00260 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.3e-19
Identity = 57/94 (60.64%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1  MNYSNSKHFPFVTILVFSIIVVVVLSSKCST------------DTPGCGITIDAAGTVEV 60
          MN+SNS+HFPFVT LVFSIIVV+VLSSK +T            DTPGCG      G    
Sbjct: 1  MNHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLHDGHGSSADTPGCGNYNRCGGYGRG 60

Query: 61 EVEMVAHTGCCGVNRGGRCIQCCNYANEVTNVKP 83
                  GCCG NRGGRCIQCCNYANEVTNVKP
Sbjct: 61 GGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVKP 94

[Close]

BLAST of PI0009339 vs. ExPASy TrEMBL
Match: A0A0A0K6K9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037550 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.6e-18
Identity = 55/94 (58.51%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 1  MNYSNSKHFPFVTILVFSIIVVVVLSSK------------CSTDTPGCGITIDAAGTVEV 60
          MNYSNSKHFPFVT LVFSI+VV+VLS K             S DTPGCG      G    
Sbjct: 1  MNYSNSKHFPFVTTLVFSIVVVLVLSPKVAARDLLSDGRGSSADTPGCGNYYRCGGYGRG 60

Query: 61 EVEMVAHTGCCGVNRGGRCIQCCNYANEVTNVKP 83
                  GCCG NR GRCIQCCNYANEVTNV P
Sbjct: 61 GGGNGCSHGCCGFNRDGRCIQCCNYANEVTNVNP 94

[Close]

BLAST of PI0009339 vs. NCBI nr
Match: KAA0059145.1 (hypothetical protein E6C27_scaffold430G00610 [Cucumis melo var. makuwa] >TYK02545.1 hypothetical protein E5676_scaffold201G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 4.8e-19
Identity = 57/94 (60.64%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1  MNYSNSKHFPFVTILVFSIIVVVVLSSKCST------------DTPGCGITIDAAGTVEV 60
          MN+SNS+HFPFVT LVFSIIVV+VLSSK +T            DTPGCG      G    
Sbjct: 1  MNHSNSRHFPFVTTLVFSIIVVLVLSSKVATRDLLHDGHGSSADTPGCGNYNRCGGYGRG 60

Query: 61 EVEMVAHTGCCGVNRGGRCIQCCNYANEVTNVKP 83
                  GCCG NRGGRCIQCCNYANEVTNVKP
Sbjct: 61 GGGDGCSHGCCGFNRGGRCIQCCNYANEVTNVKP 94

[Close]

BLAST of PI0009339 vs. NCBI nr
Match: KAE8645724.1 (hypothetical protein Csa_020254, partial [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 3.3e-07
Identity = 31/53 (58.49%), Postives = 31/53 (58.49%), Query Frame = 0


Query: 30 STDTPGCGITIDAAGTVEVEVEMVAHTGCCGVNRGGRCIQCCNYANEVTNVKP 83
          S DTPGCG      G            GCCG NR GRCIQCCNYANEVTNV P
Sbjct: 21 SADTPGCGNYYRCGGYGRGGGGNGCSHGCCGFNRDGRCIQCCNYANEVTNVNP 73

The following BLAST results are available for this feature:

BLAST of PI0009339 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009339 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTN8	2.3e-19	60.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K6K9	2.6e-18	58.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037550 PE=4 SV=1	[more]

BLAST of PI0009339 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059145.1	4.8e-19	60.64	hypothetical protein E6C27_scaffold430G00610 [Cucumis melo var. makuwa] >TYK0254...	[more]
KAE8645724.1	3.3e-07	58.49	hypothetical protein Csa_020254, partial [Cucumis sativus]	[more]

BLAST of PI0009339 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009339.1	PI0009339.1	mRNA