Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGATCCTGGATGCTTCACTGTGCCCTGCTGTATAGGCGACATGGATCTTGGTCGCATGATATGCGACCTTGGAGCCAGTATCACTTTGATATCACTTTCTATCTTTAAGAAATTGGGGATAGGAGAGGTTCAACCAACATCAGTAAGACTCCAGTCGGCGGACAGATTCATTGTGCATCCTGAAGGTAAGATTGAAGACATTTTAGTGAAGCTGGACAAGTTTATATTCACCGCAGACTTCGTCATTCTAGATCGAAGCTGATCGAGAGTTGCAAATAATTTTTGGGCTGCCATTGCAATCAACAGGCAGAACCTTGATAGATGTCCACCAAAGAGAGTTAAAGATGCGAGTTAATGACCAAAAAGTCACCTTCAACGTTGATAACCCATTGAAATTCCCCGAAGATGTTAAGAATTGTAATGCAATTGAATCCCTCATATGGGATTATTGCAAGGAAGAAGTCATTGTCGAGTTATTCAGCCTGGAAGTATTCATTGAAGAGGACCCTAAAGGCGTTTTAGAAATAGTGAATAACGTGTCTGACGCAAGGAAGTTCGAGCCTTTGGATCTGCAAACTAAAGGTGTTAAGACATAA
mRNA sequence
ATGACAGATCCTGGATGCTTCACTGTGCCCTGCTGTATAGGCGACATGGATCTTGGTCGCATGATATGCGACCTTGGAGCCAGTATCACTTTGATATCACTTTCTATCTTTAAGAAATTGGGGATAGGAGAGGTTCAACCAACATCAGTAAGACTCCAGTCGGCGGACAGATTCATTGTGCATCCTGAAGGTAAGATTGAAGACATTTTAGTGAAGCTGGACAAGTTTATATTCACCGCAGACTTCATGCGAGTTAATGACCAAAAAGTCACCTTCAACGTTGATAACCCATTGAAATTCCCCGAAGATGTTAAGAATTGTAATGCAATTGAATCCCTCATATGGGATTATTGCAAGGAAGAAGTCATTGTCGAGTTATTCAGCCTGGAAGTATTCATTGAAGAGGACCCTAAAGGCGTTTTAGAAATAGTGAATAACGTGTCTGACGCAAGGAAGTTCGAGCCTTTGGATCTGCAAACTAAAGGTGTTAAGACATAA
Coding sequence (CDS)
ATGACAGATCCTGGATGCTTCACTGTGCCCTGCTGTATAGGCGACATGGATCTTGGTCGCATGATATGCGACCTTGGAGCCAGTATCACTTTGATATCACTTTCTATCTTTAAGAAATTGGGGATAGGAGAGGTTCAACCAACATCAGTAAGACTCCAGTCGGCGGACAGATTCATTGTGCATCCTGAAGGTAAGATTGAAGACATTTTAGTGAAGCTGGACAAGTTTATATTCACCGCAGACTTCATGCGAGTTAATGACCAAAAAGTCACCTTCAACGTTGATAACCCATTGAAATTCCCCGAAGATGTTAAGAATTGTAATGCAATTGAATCCCTCATATGGGATTATTGCAAGGAAGAAGTCATTGTCGAGTTATTCAGCCTGGAAGTATTCATTGAAGAGGACCCTAAAGGCGTTTTAGAAATAGTGAATAACGTGTCTGACGCAAGGAAGTTCGAGCCTTTGGATCTGCAAACTAAAGGTGTTAAGACATAA
Protein sequence
MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIVHPEGKIEDILVKLDKFIFTADFMRVNDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKEEVIVELFSLEVFIEEDPKGVLEIVNNVSDARKFEPLDLQTKGVKT
Homology
BLAST of PI0009246 vs. ExPASy TrEMBL
Match:
A0A5D3DQ91 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00440 PE=4 SV=1)
HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 74/150 (49.33%), Postives = 98/150 (65.33%), Query Frame = 0
Query: 1 MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
M D FT+PC IG MDL R +C+LG SI L+ LSIFKKL I VQPT + LQ DR I
Sbjct: 1 MIDLRSFTIPCSIGGMDLNRALCNLGTSINLMLLSIFKKLEIKVVQPTHMSLQFVDRSIA 60
Query: 61 HPEGKIEDILVKLDKFIFTADFM--------RVNDQKVTFNVDNPLKFPEDVKNCNAIES 120
P+GK ED+LVK+DKF+F DF+ VND++V F++ N +KFP D +NCNAI+S
Sbjct: 61 KPKGKFEDVLVKVDKFLFPIDFVILDYEVYREVNDEEVKFDIINTMKFPIDSENCNAIKS 120
Query: 121 LIWDYCKEEVIVELFSLEVFIEEDPKGVLE 143
WDY +EE++ VF+E +G ++
Sbjct: 121 FGWDYYEEEIVNGSVQFNVFLERSVEGFID 150
BLAST of PI0009246 vs. ExPASy TrEMBL
Match:
A0A5A7UE99 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00340 PE=4 SV=1)
HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 88/158 (55.70%), Postives = 100/158 (63.29%), Query Frame = 0
Query: 16 MDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIVHPEGKIEDILVKLDK 75
MDLGR + DLGASI L+ LSIFKKL I EVQPT +RLQ DR I PEGKIED+LVK
Sbjct: 1 MDLGRALSDLGASINLMPLSIFKKLEIWEVQPTDMRLQFVDRSIAKPEGKIEDVLVKPFL 60
Query: 76 FIFTADF--------MRVNDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKEEVIVELF 135
I A M ND+++ FN +KFP + NAIESL WDYCKEE ELF
Sbjct: 61 LIGRALIDVHQVELSMCFNDEEIKFNCYQSMKFPANDVKYNAIESLGWDYCKEEPYHELF 120
Query: 136 SLEVFI-EEDPKGVLEIVNNVSDARKFEPLDLQTKGVK 165
S E F EEDP +LE VN + KFE LDL+TKG K
Sbjct: 121 STEEFFEEEDPSYILEEVNVMLGKTKFESLDLKTKGKK 158
BLAST of PI0009246 vs. ExPASy TrEMBL
Match:
A0A5D3BZI6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00310 PE=4 SV=1)
HSP 1 Score: 144.4 bits (363), Expect = 4.1e-31
Identity = 84/164 (51.22%), Postives = 103/164 (62.80%), Query Frame = 0
Query: 1 MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
MT+ G FT+PC IG MDLGR +CDL ASI L L +FK LGIG+V+PT+V L D IV
Sbjct: 24 MTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFVFKNLGIGKVKPTTVALHLVDISIV 83
Query: 61 HPEGKIEDILVKLDKFIFTADFMRVNDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKE 120
P+G+IE+ LVK+DKFIF DF+ ++ + D +E
Sbjct: 84 QPKGRIENALVKVDKFIFPTDFIILD-----YEADR----------------------EE 143
Query: 121 EVIVELFSLEVFIEEDPKGVLEIVNNVSDARKFEPLDLQTKGVK 165
EVIVELFS E FI+E PK +LE VN VSD RKFEPL+LQ KG K
Sbjct: 144 EVIVELFSSEEFIKECPKDILEEVNVVSDVRKFEPLNLQNKGHK 160
BLAST of PI0009246 vs. ExPASy TrEMBL
Match:
A0A5A7VHV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00780 PE=4 SV=1)
HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 83/164 (50.61%), Postives = 103/164 (62.80%), Query Frame = 0
Query: 1 MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
MT+ G FT+PC IG MDLGR +CDL ASI L L +FK LGIG+V+PT+V L D IV
Sbjct: 24 MTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFVFKNLGIGKVKPTTVALHLVDISIV 83
Query: 61 HPEGKIEDILVKLDKFIFTADFMRVNDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKE 120
P+G+IE+ LVK+DKFIF +F+ ++ + D +E
Sbjct: 84 QPKGRIENALVKVDKFIFPTNFIILD-----YEADR----------------------EE 143
Query: 121 EVIVELFSLEVFIEEDPKGVLEIVNNVSDARKFEPLDLQTKGVK 165
EVIVELFS E FI+E PK +LE VN VSD RKFEPL+LQ KG K
Sbjct: 144 EVIVELFSSEEFIKECPKDILEEVNVVSDVRKFEPLNLQNKGHK 160
BLAST of PI0009246 vs. ExPASy TrEMBL
Match:
A0A5A7UF79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00260 PE=4 SV=1)
HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29
Identity = 81/165 (49.09%), Postives = 96/165 (58.18%), Query Frame = 0
Query: 1 MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
MT+P FTVPC IG+MDLGR +C+L SI L+ LSIFKKL I EVQPT +RL AD+FI
Sbjct: 82 MTNPSSFTVPCSIGEMDLGRALCNLRVSINLMLLSIFKKLEIREVQPTHIRLYFADKFIA 141
Query: 61 HPEGKIEDILVKLDKFIFTADFMRVNDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKE 120
PE KI+D FP D +NCN IE L W+Y ++
Sbjct: 142 KPEDKIKD-------------------------------FPTDDENCNVIEFLGWNYFEK 201
Query: 121 EVIVELFSLEVFIEE-DPKGVLEIVNNVSDARKFEPLDLQTKGVK 165
E ELFS E F EE DP +L+ VN VS +KFE LDLQ KG K
Sbjct: 202 EAYQELFSTEEFFEEDDPSYILKEVNVVSSEKKFESLDLQIKGEK 215
BLAST of PI0009246 vs. NCBI nr
Match:
XP_030502183.1 (uncharacterized protein LOC115717351 [Cannabis sativa])
HSP 1 Score: 149.1 bits (375), Expect = 3.5e-32
Identity = 87/211 (41.23%), Postives = 114/211 (54.03%), Query Frame = 0
Query: 1 MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
+ DPG FT+PC IG D+GR +CDLGASI L+ +SIFKKLGIGE +PT+V LQ ADR +
Sbjct: 143 LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 202
Query: 61 HPEGKIEDILVKLDKFIFTADF-----------------------------------MRV 120
HPEGKIED+LV++DKFIF ADF MRV
Sbjct: 203 HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILGRSFLATGRTLIDVQNEELTMRV 262
Query: 121 NDQKVTFNVDNPLKFPEDVKNCNAI--------ESLIWDYCKEEVIVELFSLEVFIEEDP 165
NDQKVTFNV N ++FP++++ C+ I E + CK+E + F + ED
Sbjct: 263 NDQKVTFNVFNAMRFPDEIEECSRISVIDSIVAEKFHKEACKDEKFISSFDELEDLSEDE 322
BLAST of PI0009246 vs. NCBI nr
Match:
TYK25836.1 (uncharacterized protein E5676_scaffold436G00440 [Cucumis melo var. makuwa])
HSP 1 Score: 146.4 bits (368), Expect = 2.2e-31
Identity = 74/150 (49.33%), Postives = 98/150 (65.33%), Query Frame = 0
Query: 1 MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
M D FT+PC IG MDL R +C+LG SI L+ LSIFKKL I VQPT + LQ DR I
Sbjct: 1 MIDLRSFTIPCSIGGMDLNRALCNLGTSINLMLLSIFKKLEIKVVQPTHMSLQFVDRSIA 60
Query: 61 HPEGKIEDILVKLDKFIFTADFM--------RVNDQKVTFNVDNPLKFPEDVKNCNAIES 120
P+GK ED+LVK+DKF+F DF+ VND++V F++ N +KFP D +NCNAI+S
Sbjct: 61 KPKGKFEDVLVKVDKFLFPIDFVILDYEVYREVNDEEVKFDIINTMKFPIDSENCNAIKS 120
Query: 121 LIWDYCKEEVIVELFSLEVFIEEDPKGVLE 143
WDY +EE++ VF+E +G ++
Sbjct: 121 FGWDYYEEEIVNGSVQFNVFLERSVEGFID 150
BLAST of PI0009246 vs. NCBI nr
Match:
KAA0054122.1 (uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa])
HSP 1 Score: 146.0 bits (367), Expect = 2.9e-31
Identity = 88/158 (55.70%), Postives = 100/158 (63.29%), Query Frame = 0
Query: 16 MDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIVHPEGKIEDILVKLDK 75
MDLGR + DLGASI L+ LSIFKKL I EVQPT +RLQ DR I PEGKIED+LVK
Sbjct: 1 MDLGRALSDLGASINLMPLSIFKKLEIWEVQPTDMRLQFVDRSIAKPEGKIEDVLVKPFL 60
Query: 76 FIFTADF--------MRVNDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKEEVIVELF 135
I A M ND+++ FN +KFP + NAIESL WDYCKEE ELF
Sbjct: 61 LIGRALIDVHQVELSMCFNDEEIKFNCYQSMKFPANDVKYNAIESLGWDYCKEEPYHELF 120
Query: 136 SLEVFI-EEDPKGVLEIVNNVSDARKFEPLDLQTKGVK 165
S E F EEDP +LE VN + KFE LDL+TKG K
Sbjct: 121 STEEFFEEEDPSYILEEVNVMLGKTKFESLDLKTKGKK 158
BLAST of PI0009246 vs. NCBI nr
Match:
XP_030504924.1 (uncharacterized protein LOC115719886 [Cannabis sativa])
HSP 1 Score: 146.0 bits (367), Expect = 2.9e-31
Identity = 77/170 (45.29%), Postives = 102/170 (60.00%), Query Frame = 0
Query: 1 MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
+ DPG FT+PC IG D+GR +CDLGASI L+ +SIFKKLGIGE +PT+V LQ ADR +
Sbjct: 10 LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 69
Query: 61 HPEGKIEDILVKLDKFIFTADF-----------------------------------MRV 120
HPEGKIED+LV++DKFIF ADF MRV
Sbjct: 70 HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILGRPFLATGRTLIDVQNGELTMRV 129
Query: 121 NDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKEEVIVELFSLEVFIEE 136
NDQKVTFNV N ++FP++++ C+ I + + ++ E F E + +E
Sbjct: 130 NDQKVTFNVFNAMRFPDEIEECSRISVI------DSIVAEKFHKEAWRDE 173
BLAST of PI0009246 vs. NCBI nr
Match:
XP_030477929.1 (uncharacterized protein LOC115694963 [Cannabis sativa])
HSP 1 Score: 146.0 bits (367), Expect = 2.9e-31
Identity = 77/170 (45.29%), Postives = 102/170 (60.00%), Query Frame = 0
Query: 1 MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
+ DPG FT+PC IG D+GR +CDLGASI L+ +SIFKKLGIGE +PT+V LQ ADR +
Sbjct: 70 LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 129
Query: 61 HPEGKIEDILVKLDKFIFTADF-----------------------------------MRV 120
HPEGKIED+LV++DKFIF ADF MRV
Sbjct: 130 HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILGRPFLATGRTLIDVQNGELTMRV 189
Query: 121 NDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKEEVIVELFSLEVFIEE 136
NDQKVTFNV N ++FP++++ C+ I + + ++ E F E + +E
Sbjct: 190 NDQKVTFNVFNAMRFPDEIEECSRISVI------DSIVAEKFHKEAWKDE 233
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DQ91 | 1.1e-31 | 49.33 | RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... | [more] |
A0A5A7UE99 | 1.4e-31 | 55.70 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3BZI6 | 4.1e-31 | 51.22 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VHV2 | 1.6e-30 | 50.61 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7UF79 | 1.7e-29 | 49.09 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
XP_030502183.1 | 3.5e-32 | 41.23 | uncharacterized protein LOC115717351 [Cannabis sativa] | [more] |
TYK25836.1 | 2.2e-31 | 49.33 | uncharacterized protein E5676_scaffold436G00440 [Cucumis melo var. makuwa] | [more] |
KAA0054122.1 | 2.9e-31 | 55.70 | uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa] | [more] |
XP_030504924.1 | 2.9e-31 | 45.29 | uncharacterized protein LOC115719886 [Cannabis sativa] | [more] |
XP_030477929.1 | 2.9e-31 | 45.29 | uncharacterized protein LOC115694963 [Cannabis sativa] | [more] |
Match Name | E-value | Identity | Description | |