PI0009246 (gene) Melon (PI 482460) v1

Overview
NamePI0009246
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRT_RNaseH_2 domain-containing protein
Locationchr07: 12874002 .. 12874602 (+)
RNA-Seq ExpressionPI0009246
SyntenyPI0009246
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGATCCTGGATGCTTCACTGTGCCCTGCTGTATAGGCGACATGGATCTTGGTCGCATGATATGCGACCTTGGAGCCAGTATCACTTTGATATCACTTTCTATCTTTAAGAAATTGGGGATAGGAGAGGTTCAACCAACATCAGTAAGACTCCAGTCGGCGGACAGATTCATTGTGCATCCTGAAGGTAAGATTGAAGACATTTTAGTGAAGCTGGACAAGTTTATATTCACCGCAGACTTCGTCATTCTAGATCGAAGCTGATCGAGAGTTGCAAATAATTTTTGGGCTGCCATTGCAATCAACAGGCAGAACCTTGATAGATGTCCACCAAAGAGAGTTAAAGATGCGAGTTAATGACCAAAAAGTCACCTTCAACGTTGATAACCCATTGAAATTCCCCGAAGATGTTAAGAATTGTAATGCAATTGAATCCCTCATATGGGATTATTGCAAGGAAGAAGTCATTGTCGAGTTATTCAGCCTGGAAGTATTCATTGAAGAGGACCCTAAAGGCGTTTTAGAAATAGTGAATAACGTGTCTGACGCAAGGAAGTTCGAGCCTTTGGATCTGCAAACTAAAGGTGTTAAGACATAA

mRNA sequence

ATGACAGATCCTGGATGCTTCACTGTGCCCTGCTGTATAGGCGACATGGATCTTGGTCGCATGATATGCGACCTTGGAGCCAGTATCACTTTGATATCACTTTCTATCTTTAAGAAATTGGGGATAGGAGAGGTTCAACCAACATCAGTAAGACTCCAGTCGGCGGACAGATTCATTGTGCATCCTGAAGGTAAGATTGAAGACATTTTAGTGAAGCTGGACAAGTTTATATTCACCGCAGACTTCATGCGAGTTAATGACCAAAAAGTCACCTTCAACGTTGATAACCCATTGAAATTCCCCGAAGATGTTAAGAATTGTAATGCAATTGAATCCCTCATATGGGATTATTGCAAGGAAGAAGTCATTGTCGAGTTATTCAGCCTGGAAGTATTCATTGAAGAGGACCCTAAAGGCGTTTTAGAAATAGTGAATAACGTGTCTGACGCAAGGAAGTTCGAGCCTTTGGATCTGCAAACTAAAGGTGTTAAGACATAA

Coding sequence (CDS)

ATGACAGATCCTGGATGCTTCACTGTGCCCTGCTGTATAGGCGACATGGATCTTGGTCGCATGATATGCGACCTTGGAGCCAGTATCACTTTGATATCACTTTCTATCTTTAAGAAATTGGGGATAGGAGAGGTTCAACCAACATCAGTAAGACTCCAGTCGGCGGACAGATTCATTGTGCATCCTGAAGGTAAGATTGAAGACATTTTAGTGAAGCTGGACAAGTTTATATTCACCGCAGACTTCATGCGAGTTAATGACCAAAAAGTCACCTTCAACGTTGATAACCCATTGAAATTCCCCGAAGATGTTAAGAATTGTAATGCAATTGAATCCCTCATATGGGATTATTGCAAGGAAGAAGTCATTGTCGAGTTATTCAGCCTGGAAGTATTCATTGAAGAGGACCCTAAAGGCGTTTTAGAAATAGTGAATAACGTGTCTGACGCAAGGAAGTTCGAGCCTTTGGATCTGCAAACTAAAGGTGTTAAGACATAA

Protein sequence

MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIVHPEGKIEDILVKLDKFIFTADFMRVNDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKEEVIVELFSLEVFIEEDPKGVLEIVNNVSDARKFEPLDLQTKGVKT
Homology
BLAST of PI0009246 vs. ExPASy TrEMBL
Match: A0A5D3DQ91 (RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00440 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 74/150 (49.33%), Postives = 98/150 (65.33%), Query Frame = 0

Query: 1   MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
           M D   FT+PC IG MDL R +C+LG SI L+ LSIFKKL I  VQPT + LQ  DR I 
Sbjct: 1   MIDLRSFTIPCSIGGMDLNRALCNLGTSINLMLLSIFKKLEIKVVQPTHMSLQFVDRSIA 60

Query: 61  HPEGKIEDILVKLDKFIFTADFM--------RVNDQKVTFNVDNPLKFPEDVKNCNAIES 120
            P+GK ED+LVK+DKF+F  DF+         VND++V F++ N +KFP D +NCNAI+S
Sbjct: 61  KPKGKFEDVLVKVDKFLFPIDFVILDYEVYREVNDEEVKFDIINTMKFPIDSENCNAIKS 120

Query: 121 LIWDYCKEEVIVELFSLEVFIEEDPKGVLE 143
             WDY +EE++       VF+E   +G ++
Sbjct: 121 FGWDYYEEEIVNGSVQFNVFLERSVEGFID 150

BLAST of PI0009246 vs. ExPASy TrEMBL
Match: A0A5A7UE99 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00340 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 88/158 (55.70%), Postives = 100/158 (63.29%), Query Frame = 0

Query: 16  MDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIVHPEGKIEDILVKLDK 75
           MDLGR + DLGASI L+ LSIFKKL I EVQPT +RLQ  DR I  PEGKIED+LVK   
Sbjct: 1   MDLGRALSDLGASINLMPLSIFKKLEIWEVQPTDMRLQFVDRSIAKPEGKIEDVLVKPFL 60

Query: 76  FIFTADF--------MRVNDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKEEVIVELF 135
            I  A          M  ND+++ FN    +KFP +    NAIESL WDYCKEE   ELF
Sbjct: 61  LIGRALIDVHQVELSMCFNDEEIKFNCYQSMKFPANDVKYNAIESLGWDYCKEEPYHELF 120

Query: 136 SLEVFI-EEDPKGVLEIVNNVSDARKFEPLDLQTKGVK 165
           S E F  EEDP  +LE VN +    KFE LDL+TKG K
Sbjct: 121 STEEFFEEEDPSYILEEVNVMLGKTKFESLDLKTKGKK 158

BLAST of PI0009246 vs. ExPASy TrEMBL
Match: A0A5D3BZI6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00310 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 4.1e-31
Identity = 84/164 (51.22%), Postives = 103/164 (62.80%), Query Frame = 0

Query: 1   MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
           MT+ G FT+PC IG MDLGR +CDL ASI L  L +FK LGIG+V+PT+V L   D  IV
Sbjct: 24  MTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFVFKNLGIGKVKPTTVALHLVDISIV 83

Query: 61  HPEGKIEDILVKLDKFIFTADFMRVNDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKE 120
            P+G+IE+ LVK+DKFIF  DF+ ++     +  D                       +E
Sbjct: 84  QPKGRIENALVKVDKFIFPTDFIILD-----YEADR----------------------EE 143

Query: 121 EVIVELFSLEVFIEEDPKGVLEIVNNVSDARKFEPLDLQTKGVK 165
           EVIVELFS E FI+E PK +LE VN VSD RKFEPL+LQ KG K
Sbjct: 144 EVIVELFSSEEFIKECPKDILEEVNVVSDVRKFEPLNLQNKGHK 160

BLAST of PI0009246 vs. ExPASy TrEMBL
Match: A0A5A7VHV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00780 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 83/164 (50.61%), Postives = 103/164 (62.80%), Query Frame = 0

Query: 1   MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
           MT+ G FT+PC IG MDLGR +CDL ASI L  L +FK LGIG+V+PT+V L   D  IV
Sbjct: 24  MTNLGSFTIPCYIGSMDLGRALCDLRASINLRLLFVFKNLGIGKVKPTTVALHLVDISIV 83

Query: 61  HPEGKIEDILVKLDKFIFTADFMRVNDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKE 120
            P+G+IE+ LVK+DKFIF  +F+ ++     +  D                       +E
Sbjct: 84  QPKGRIENALVKVDKFIFPTNFIILD-----YEADR----------------------EE 143

Query: 121 EVIVELFSLEVFIEEDPKGVLEIVNNVSDARKFEPLDLQTKGVK 165
           EVIVELFS E FI+E PK +LE VN VSD RKFEPL+LQ KG K
Sbjct: 144 EVIVELFSSEEFIKECPKDILEEVNVVSDVRKFEPLNLQNKGHK 160

BLAST of PI0009246 vs. ExPASy TrEMBL
Match: A0A5A7UF79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00260 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29
Identity = 81/165 (49.09%), Postives = 96/165 (58.18%), Query Frame = 0

Query: 1   MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
           MT+P  FTVPC IG+MDLGR +C+L  SI L+ LSIFKKL I EVQPT +RL  AD+FI 
Sbjct: 82  MTNPSSFTVPCSIGEMDLGRALCNLRVSINLMLLSIFKKLEIREVQPTHIRLYFADKFIA 141

Query: 61  HPEGKIEDILVKLDKFIFTADFMRVNDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKE 120
            PE KI+D                               FP D +NCN IE L W+Y ++
Sbjct: 142 KPEDKIKD-------------------------------FPTDDENCNVIEFLGWNYFEK 201

Query: 121 EVIVELFSLEVFIEE-DPKGVLEIVNNVSDARKFEPLDLQTKGVK 165
           E   ELFS E F EE DP  +L+ VN VS  +KFE LDLQ KG K
Sbjct: 202 EAYQELFSTEEFFEEDDPSYILKEVNVVSSEKKFESLDLQIKGEK 215

BLAST of PI0009246 vs. NCBI nr
Match: XP_030502183.1 (uncharacterized protein LOC115717351 [Cannabis sativa])

HSP 1 Score: 149.1 bits (375), Expect = 3.5e-32
Identity = 87/211 (41.23%), Postives = 114/211 (54.03%), Query Frame = 0

Query: 1   MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
           + DPG FT+PC IG  D+GR +CDLGASI L+ +SIFKKLGIGE +PT+V LQ ADR + 
Sbjct: 143 LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 202

Query: 61  HPEGKIEDILVKLDKFIFTADF-----------------------------------MRV 120
           HPEGKIED+LV++DKFIF ADF                                   MRV
Sbjct: 203 HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILGRSFLATGRTLIDVQNEELTMRV 262

Query: 121 NDQKVTFNVDNPLKFPEDVKNCNAI--------ESLIWDYCKEEVIVELFSLEVFIEEDP 165
           NDQKVTFNV N ++FP++++ C+ I        E    + CK+E  +  F     + ED 
Sbjct: 263 NDQKVTFNVFNAMRFPDEIEECSRISVIDSIVAEKFHKEACKDEKFISSFDELEDLSEDE 322

BLAST of PI0009246 vs. NCBI nr
Match: TYK25836.1 (uncharacterized protein E5676_scaffold436G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 2.2e-31
Identity = 74/150 (49.33%), Postives = 98/150 (65.33%), Query Frame = 0

Query: 1   MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
           M D   FT+PC IG MDL R +C+LG SI L+ LSIFKKL I  VQPT + LQ  DR I 
Sbjct: 1   MIDLRSFTIPCSIGGMDLNRALCNLGTSINLMLLSIFKKLEIKVVQPTHMSLQFVDRSIA 60

Query: 61  HPEGKIEDILVKLDKFIFTADFM--------RVNDQKVTFNVDNPLKFPEDVKNCNAIES 120
            P+GK ED+LVK+DKF+F  DF+         VND++V F++ N +KFP D +NCNAI+S
Sbjct: 61  KPKGKFEDVLVKVDKFLFPIDFVILDYEVYREVNDEEVKFDIINTMKFPIDSENCNAIKS 120

Query: 121 LIWDYCKEEVIVELFSLEVFIEEDPKGVLE 143
             WDY +EE++       VF+E   +G ++
Sbjct: 121 FGWDYYEEEIVNGSVQFNVFLERSVEGFID 150

BLAST of PI0009246 vs. NCBI nr
Match: KAA0054122.1 (uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 2.9e-31
Identity = 88/158 (55.70%), Postives = 100/158 (63.29%), Query Frame = 0

Query: 16  MDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIVHPEGKIEDILVKLDK 75
           MDLGR + DLGASI L+ LSIFKKL I EVQPT +RLQ  DR I  PEGKIED+LVK   
Sbjct: 1   MDLGRALSDLGASINLMPLSIFKKLEIWEVQPTDMRLQFVDRSIAKPEGKIEDVLVKPFL 60

Query: 76  FIFTADF--------MRVNDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKEEVIVELF 135
            I  A          M  ND+++ FN    +KFP +    NAIESL WDYCKEE   ELF
Sbjct: 61  LIGRALIDVHQVELSMCFNDEEIKFNCYQSMKFPANDVKYNAIESLGWDYCKEEPYHELF 120

Query: 136 SLEVFI-EEDPKGVLEIVNNVSDARKFEPLDLQTKGVK 165
           S E F  EEDP  +LE VN +    KFE LDL+TKG K
Sbjct: 121 STEEFFEEEDPSYILEEVNVMLGKTKFESLDLKTKGKK 158

BLAST of PI0009246 vs. NCBI nr
Match: XP_030504924.1 (uncharacterized protein LOC115719886 [Cannabis sativa])

HSP 1 Score: 146.0 bits (367), Expect = 2.9e-31
Identity = 77/170 (45.29%), Postives = 102/170 (60.00%), Query Frame = 0

Query: 1   MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
           + DPG FT+PC IG  D+GR +CDLGASI L+ +SIFKKLGIGE +PT+V LQ ADR + 
Sbjct: 10  LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 69

Query: 61  HPEGKIEDILVKLDKFIFTADF-----------------------------------MRV 120
           HPEGKIED+LV++DKFIF ADF                                   MRV
Sbjct: 70  HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILGRPFLATGRTLIDVQNGELTMRV 129

Query: 121 NDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKEEVIVELFSLEVFIEE 136
           NDQKVTFNV N ++FP++++ C+ I  +      + ++ E F  E + +E
Sbjct: 130 NDQKVTFNVFNAMRFPDEIEECSRISVI------DSIVAEKFHKEAWRDE 173

BLAST of PI0009246 vs. NCBI nr
Match: XP_030477929.1 (uncharacterized protein LOC115694963 [Cannabis sativa])

HSP 1 Score: 146.0 bits (367), Expect = 2.9e-31
Identity = 77/170 (45.29%), Postives = 102/170 (60.00%), Query Frame = 0

Query: 1   MTDPGCFTVPCCIGDMDLGRMICDLGASITLISLSIFKKLGIGEVQPTSVRLQSADRFIV 60
           + DPG FT+PC IG  D+GR +CDLGASI L+ +SIFKKLGIGE +PT+V LQ ADR + 
Sbjct: 70  LKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSIFKKLGIGEARPTTVTLQLADRSMA 129

Query: 61  HPEGKIEDILVKLDKFIFTADF-----------------------------------MRV 120
           HPEGKIED+LV++DKFIF ADF                                   MRV
Sbjct: 130 HPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPIILGRPFLATGRTLIDVQNGELTMRV 189

Query: 121 NDQKVTFNVDNPLKFPEDVKNCNAIESLIWDYCKEEVIVELFSLEVFIEE 136
           NDQKVTFNV N ++FP++++ C+ I  +      + ++ E F  E + +E
Sbjct: 190 NDQKVTFNVFNAMRFPDEIEECSRISVI------DSIVAEKFHKEAWKDE 233

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DQ911.1e-3149.33RT_RNaseH_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5A7UE991.4e-3155.70Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BZI64.1e-3151.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VHV21.6e-3050.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UF791.7e-2949.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
XP_030502183.13.5e-3241.23uncharacterized protein LOC115717351 [Cannabis sativa][more]
TYK25836.12.2e-3149.33uncharacterized protein E5676_scaffold436G00440 [Cucumis melo var. makuwa][more]
KAA0054122.12.9e-3155.70uncharacterized protein E6C27_scaffold131G00340 [Cucumis melo var. makuwa][more]
XP_030504924.12.9e-3145.29uncharacterized protein LOC115719886 [Cannabis sativa][more]
XP_030477929.12.9e-3145.29uncharacterized protein LOC115694963 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 1..98
e-value: 4.5E-13
score: 51.0
NoneNo IPR availablePANTHERPTHR33067:SF17SUBFAMILY NOT NAMEDcoord: 2..85
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 2..85
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 20..83
e-value: 8.10306E-8
score: 45.7904

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0009246.1PI0009246.1mRNA