PI0009227 (gene) Melon (PI 482460) v1

Overview
NamePI0009227
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr11: 22415858 .. 22416314 (-)
RNA-Seq ExpressionPI0009227
SyntenyPI0009227
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAAAAGCTGCCAGGATGTAACATCCAGGGTTCGCCAACAATAGACTGTCAGATAAAAATCCTTAAGAGAACGTTCCAAGCCATTGCAGAAATGCACGACCCATCCTGCAGTGGGTTTGGATGGAACGATGAATTCAAGTGCATCATCGCTGAGAAGGAATTGTTCGACAATTGGGTGAAGGTACGTTATTCATTTTTTCGACCGTTATTTGTTTATAATAAAAAACTAATAATTTATTGAAACGTTTTCACAGAGTCATCCTGTCGCAAAGGGCCTCCTCAATAAATCCTTTCCCCATTACGATGACCTATCCTACGTATTTGGGAAAGATCGTGCTATTGGAGCACGCGAAGAGACATTCGCCGATGTGGGGTGGAATGTGCCAGGAGGGTACAAGGGATTTCCTGCCGACGATGCTAACGATCCAGAGACCCTTATGATGGATAGTTAA

mRNA sequence

ATGGCAGAAAAGCTGCCAGGATGTAACATCCAGGGTTCGCCAACAATAGACTGTCAGATAAAAATCCTTAAGAGAACGTTCCAAGCCATTGCAGAAATGCACGACCCATCCTGCAGTGGGTTTGGATGGAACGATGAATTCAAGTGCATCATCGCTGAGAAGGAATTGTTCGACAATTGGGTGAAGAGTCATCCTGTCGCAAAGGGCCTCCTCAATAAATCCTTTCCCCATTACGATGACCTATCCTACGTATTTGGGAAAGATCGTGCTATTGGAGCACGCGAAGAGACATTCGCCGATGTGGGGTGGAATGTGCCAGGAGGGTACAAGGGATTTCCTGCCGACGATGCTAACGATCCAGAGACCCTTATGATGGATAGTTAA

Coding sequence (CDS)

ATGGCAGAAAAGCTGCCAGGATGTAACATCCAGGGTTCGCCAACAATAGACTGTCAGATAAAAATCCTTAAGAGAACGTTCCAAGCCATTGCAGAAATGCACGACCCATCCTGCAGTGGGTTTGGATGGAACGATGAATTCAAGTGCATCATCGCTGAGAAGGAATTGTTCGACAATTGGGTGAAGAGTCATCCTGTCGCAAAGGGCCTCCTCAATAAATCCTTTCCCCATTACGATGACCTATCCTACGTATTTGGGAAAGATCGTGCTATTGGAGCACGCGAAGAGACATTCGCCGATGTGGGGTGGAATGTGCCAGGAGGGTACAAGGGATTTCCTGCCGACGATGCTAACGATCCAGAGACCCTTATGATGGATAGTTAA

Protein sequence

MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFADVGWNVPGGYKGFPADDANDPETLMMDS
Homology
BLAST of PI0009227 vs. ExPASy TrEMBL
Match: A0A5A7TYW0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold109G00440 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 83/119 (69.75%), Postives = 95/119 (79.83%), Query Frame = 0

Query: 1   MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNW 60
           M EKLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCIIAEKELFDNW
Sbjct: 2   MVEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPTCSGFGWNDEEKCIIAEKELFDNW 61

Query: 61  VKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFADVGWNVPGGYKGFPADDAND 120
           V+SHP AKGLLNK FP+YD+L+YVF +DRA+G   ETF DVG N PGGY  F   D N+
Sbjct: 62  VRSHPAAKGLLNKPFPYYDELTYVFSRDRAMGRFAETFTDVGSNEPGGYDRFDMGDGNE 120

BLAST of PI0009227 vs. ExPASy TrEMBL
Match: A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 85/120 (70.83%), Postives = 98/120 (81.67%), Query Frame = 0

Query: 1   MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNW 60
           MA+KLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCI+AEKELFDNW
Sbjct: 52  MAKKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW 111

Query: 61  VKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFADVGWNVP-GGYKGFPADDAND 120
           V+SHP AKGLLNKSFP+YD+L+YVFG+DRA G   ETFADVG N P GGY  F   D N+
Sbjct: 112 VRSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 171

BLAST of PI0009227 vs. ExPASy TrEMBL
Match: A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 86/120 (71.67%), Postives = 97/120 (80.83%), Query Frame = 0

Query: 1   MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNW 60
           MAEKLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCIIAEKELFDNW
Sbjct: 52  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNW 111

Query: 61  VKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFADVGWNVP-GGYKGFPADDAND 120
           V+SHP AKGLLNK FP+YD+L+YVFG+DRA G   ETFADVG N P GGY  F   D N+
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 171

BLAST of PI0009227 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.5e-44
Identity = 85/120 (70.83%), Postives = 97/120 (80.83%), Query Frame = 0

Query: 1   MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNW 60
           MAEKLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCI+AEKELFDNW
Sbjct: 52  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW 111

Query: 61  VKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFADVGWNVP-GGYKGFPADDAND 120
           V+SHP AKGLLNK FP+YD+L+YVFG+DRA G   ETFADVG N P GGY  F   D N+
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 171

BLAST of PI0009227 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.5e-44
Identity = 85/120 (70.83%), Postives = 97/120 (80.83%), Query Frame = 0

Query: 1   MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNW 60
           MAEKLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCI+AEKELFDNW
Sbjct: 52  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW 111

Query: 61  VKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFADVGWNVP-GGYKGFPADDAND 120
           V+SHP AKGLLNK FP+YD+L+YVFG+DRA G   ETFADVG N P GGY  F   D N+
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 171

BLAST of PI0009227 vs. NCBI nr
Match: XP_031744343.1 (uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharacterized protein LOC116404989 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 7.2e-46
Identity = 85/127 (66.93%), Postives = 99/127 (77.95%), Query Frame = 0

Query: 1   MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNW 60
           M  KLPGCN+  +  IDC+IK LKR++Q IAEM  PSC GFGWND+ KCI+AEKELFDNW
Sbjct: 2   MVAKLPGCNVHATTVIDCRIKTLKRSYQEIAEMRGPSCGGFGWNDDVKCIVAEKELFDNW 61

Query: 61  VKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFADVGWNVPGGYKGFPADDANDP 120
           V+SHP AKGLLNK FP+YD+L+YVFGKDRA+G   ETFADVG NVP G++ FP  D ND 
Sbjct: 62  VRSHPAAKGLLNKLFPYYDELAYVFGKDRAMGTHAETFADVGSNVPPGFEEFPPVDLNDM 121

Query: 121 ETLMMDS 128
           E   M S
Sbjct: 122 EFPSMSS 128

BLAST of PI0009227 vs. NCBI nr
Match: XP_031743896.1 (uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743897.1 uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743898.1 uncharacterized protein LOC116404722 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 7.2e-46
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 0

Query: 1   MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNW 60
           M  KLPGCN+  +  IDC IK LKR++QAIAEMHDPSCSGFGWND+ KCI+AEKELFDNW
Sbjct: 92  MTAKLPGCNVHETTVIDCSIKTLKRSYQAIAEMHDPSCSGFGWNDDAKCIVAEKELFDNW 151

Query: 61  VKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFADVGWNVPGGYKGFPADDAND 120
           V+SH  AKGLLNK FP+YD L+Y+FGKDRA GA  ETFADVG NVP G++ FP  D ND
Sbjct: 152 VRSHLAAKGLLNKPFPYYDKLAYIFGKDRATGAHAETFADVGSNVPPGFEEFPHVDLND 210

BLAST of PI0009227 vs. NCBI nr
Match: XP_031742657.1 (uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742659.1 uncharacterized protein LOC116404426 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 8.0e-45
Identity = 86/127 (67.72%), Postives = 98/127 (77.17%), Query Frame = 0

Query: 1   MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNW 60
           M  KLPGCN+  +  ID +IK LKR++QAIAEM  PSCSGFGWND+ KCIIAEKE FDNW
Sbjct: 52  MVVKLPGCNVHATTVIDYRIKTLKRSYQAIAEMRGPSCSGFGWNDDAKCIIAEKEFFDNW 111

Query: 61  VKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFADVGWNVPGGYKGFPADDANDP 120
           V+SHP AKGLLNK FP+YD  +YVFGKDRA+GA  ETFADVG NVP G++ FP  D ND 
Sbjct: 112 VRSHPAAKGLLNKPFPYYDKFAYVFGKDRAMGAHVETFADVGSNVPPGFEEFPPVDQNDM 171

Query: 121 ETLMMDS 128
           E   M S
Sbjct: 172 EIPSMSS 178

BLAST of PI0009227 vs. NCBI nr
Match: KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-44
Identity = 86/120 (71.67%), Postives = 97/120 (80.83%), Query Frame = 0

Query: 1   MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNW 60
           MAEKLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCIIAEKELFDNW
Sbjct: 52  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNW 111

Query: 61  VKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFADVGWNVP-GGYKGFPADDAND 120
           V+SHP AKGLLNK FP+YD+L+YVFG+DRA G   ETFADVG N P GGY  F   D N+
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE 171

BLAST of PI0009227 vs. NCBI nr
Match: KAA0047166.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01162.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-44
Identity = 83/119 (69.75%), Postives = 95/119 (79.83%), Query Frame = 0

Query: 1   MAEKLPGCNIQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNW 60
           M EKLPGC ++ +  IDC+IK LKRTFQAIAEM  P+CSGFGWNDE KCIIAEKELFDNW
Sbjct: 2   MVEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPTCSGFGWNDEEKCIIAEKELFDNW 61

Query: 61  VKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIGAREETFADVGWNVPGGYKGFPADDAND 120
           V+SHP AKGLLNK FP+YD+L+YVF +DRA+G   ETF DVG N PGGY  F   D N+
Sbjct: 62  VRSHPAAKGLLNKPFPYYDELTYVFSRDRAMGRFAETFTDVGSNEPGGYDRFDMGDGNE 120

BLAST of PI0009227 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 5.9e-06
Identity = 16/54 (29.63%), Postives = 35/54 (64.81%), Query Frame = 0

Query: 39  SGFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVFGKDRAIG 93
           +GF W+     +IA+ ++++ ++++HP A+    K+ P Y +L ++FGK+ + G
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDG 452

BLAST of PI0009227 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 5.9e-06
Identity = 22/91 (24.18%), Postives = 46/91 (50.55%), Query Frame = 0

Query: 10  IQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKG 69
           + G   +  + K L+  F+++  +      GF W+D  + ++A+  ++D ++K HP ++ 
Sbjct: 60  LYGKDVLKNRHKTLRNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRS 119

Query: 70  LLNKSFPHYDDLSYVFGKDRAIGAREETFAD 101
              KS P Y DL  V+    +    EE+ ++
Sbjct: 120 FRIKSIPCYKDLCLVYSDGMSEHKAEESISE 148

BLAST of PI0009227 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 48.1 bits (113), Expect = 5.9e-06
Identity = 22/91 (24.18%), Postives = 46/91 (50.55%), Query Frame = 0

Query: 10  IQGSPTIDCQIKILKRTFQAIAEMHDPSCSGFGWNDEFKCIIAEKELFDNWVKSHPVAKG 69
           + G   +  + K L+  F+++  +      GF W+D  + ++A+  ++D ++K HP ++ 
Sbjct: 60  LYGKDVLKNRHKTLRNLFKSVNNLLIE--DGFSWDDTRQMVVADNCVWDEYLKIHPDSRS 119

Query: 70  LLNKSFPHYDDLSYVFGKDRAIGAREETFAD 101
              KS P Y DL  V+    +    EE+ ++
Sbjct: 120 FRIKSIPCYKDLCLVYSDGMSEHKAEESISE 148

BLAST of PI0009227 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 5.0e-05
Identity = 17/46 (36.96%), Postives = 29/46 (63.04%), Query Frame = 0

Query: 40  GFGWNDEFKCIIAEKELFDNWVKSHPVAKGLLNKSFPHYDDLSYVF 86
           GF W++    I A+  ++D+++K HP+A+    KS P Y+DL  +F
Sbjct: 245 GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSLPSYNDLDTIF 290

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TYW01.1e-4469.75Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V6Q91.1e-4470.83Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VES21.1e-4471.67Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CWL21.5e-4470.83Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TRV11.5e-4470.83Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
XP_031744343.17.2e-4666.93uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharact... [more]
XP_031743896.17.2e-4671.43uncharacterized protein LOC116404722 [Cucumis sativus] >XP_031743897.1 uncharact... [more]
XP_031742657.18.0e-4567.72uncharacterized protein LOC116404426 [Cucumis sativus] >XP_031742658.1 uncharact... [more]
KAA0066208.12.3e-4471.67retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0047166.12.3e-4469.75retrotransposon protein [Cucumis melo var. makuwa] >TYK01162.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
AT2G24960.25.9e-0629.63unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G02210.15.9e-0624.18unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.25.9e-0624.18unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G24960.15.0e-0536.96unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0009227.1PI0009227.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane