Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGACTGCGAAACAGTAGCTCTAACGCAGGTAACGAGCGACGTCTTCAAGAATGGGGTACCCGAGAAGATGACAGACCCTGGTAGCTTCACAATGCCATGCTCAATAGGCTACATGGATCTAGGTCGTGCACTATGCGATCTGGGAGCCAGGATTAACCTGATGCCCCTCTCCATCTTCAAGAAATTGGAGCTAGGGGTGCAGCCAACACTCATGAGGCTCCAATTCGTTGATAGATCCATCGCCAAGCCTGAAGGAAGAATTGAAAACGTTTTGGTTAAGGTGGATAAATTCTTGTTCCTCGCTGACTTCGTCATTCTGGATTACGAAGCGGATCGGGAGGTGCCAATTATCTTGGGGCAGCCATTCCTGTCAACTGGTCGCGTCCTAATAGATGTCCACCAAGAGGAATTAACTCTTCGTTTGAATGATGAGGAGATCAAGTTCAACGTCGCAAACGCCATGAAATTCCCCTCTGACGAAAGCTGCAGCGCAATAGAATCCTTCAATTGGGATTATTGCGAGGAAGAAGCTTCTATGTTGCTCAACCCTGAAGAATTGTTTGAAGAAACAACAGAGACAGAAAGTGTCAACGTCGTATCTGGCGAAAGGAAATCAGAACTATTGGGTATGTCAACCCGAGGCGAGAAGAGAATTAAGCCATCCACAGAGGAACCACCAGAACTAGAGCTAAAGCCATTGCCAAACCACCTTAAATATGCATATTTGGGGGAAATGAGACTCTGCCCGTCATAA
mRNA sequence
ATGAATGACTGCGAAACAGTAGCTCTAACGCAGGTAACGAGCGACGTCTTCAAGAATGGGGTACCCGAGAAGATGACAGACCCTGGTAGCTTCACAATGCCATGCTCAATAGGCTACATGGATCTAGGTCGTGCACTATGCGATCTGGGAGCCAGGATTAACCTGATGCCCCTCTCCATCTTCAAGAAATTGGAGCTAGGGGTGCAGCCAACACTCATGAGGCTCCAATTCGTTGATAGATCCATCGCCAAGCCTGAAGGAAGAATTGAAAACGTTTTGGTTAAGGTGGATAAATTCTTGTTCCTCGCTGACTTCGTCATTCTGGATTACGAAGCGGATCGGGAGGAAGAAGCTTCTATGTTGCTCAACCCTGAAGAATTGTTTGAAGAAACAACAGAGACAGAAAGTGTCAACGTCGTATCTGGCGAAAGGAAATCAGAACTATTGGGTATGTCAACCCGAGGCGAGAAGAGAATTAAGCCATCCACAGAGGAACCACCAGAACTAGAGCTAAAGCCATTGCCAAACCACCTTAAATATGCATATTTGGGGGAAATGAGACTCTGCCCGTCATAA
Coding sequence (CDS)
ATGAATGACTGCGAAACAGTAGCTCTAACGCAGGTAACGAGCGACGTCTTCAAGAATGGGGTACCCGAGAAGATGACAGACCCTGGTAGCTTCACAATGCCATGCTCAATAGGCTACATGGATCTAGGTCGTGCACTATGCGATCTGGGAGCCAGGATTAACCTGATGCCCCTCTCCATCTTCAAGAAATTGGAGCTAGGGGTGCAGCCAACACTCATGAGGCTCCAATTCGTTGATAGATCCATCGCCAAGCCTGAAGGAAGAATTGAAAACGTTTTGGTTAAGGTGGATAAATTCTTGTTCCTCGCTGACTTCGTCATTCTGGATTACGAAGCGGATCGGGAGGAAGAAGCTTCTATGTTGCTCAACCCTGAAGAATTGTTTGAAGAAACAACAGAGACAGAAAGTGTCAACGTCGTATCTGGCGAAAGGAAATCAGAACTATTGGGTATGTCAACCCGAGGCGAGAAGAGAATTAAGCCATCCACAGAGGAACCACCAGAACTAGAGCTAAAGCCATTGCCAAACCACCTTAAATATGCATATTTGGGGGAAATGAGACTCTGCCCGTCATAA
Protein sequence
MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSIFKKLELGVQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADREEEASMLLNPEELFEETTETESVNVVSGERKSELLGMSTRGEKRIKPSTEEPPELELKPLPNHLKYAYLGEMRLCPS
Homology
BLAST of PI0009224 vs. ExPASy TrEMBL
Match:
A0A5D3BDT2 (RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00330 PE=4 SV=1)
HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 114/208 (54.81%), Postives = 133/208 (63.94%), Query Frame = 0
Query: 1 MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSI 60
+ND +T+AL Q TSD++KNGV EKMT PGSF +PCSI MDLG LCDLGA INLMPLSI
Sbjct: 18 INDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSI 77
Query: 61 FKKLEL-GVQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADREEEAS 120
FKKL++ VQPT MR Q DRSI P+G+IE+VLVKVDKFLF ADF+ILDYEAD E
Sbjct: 78 FKKLKIKEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEE---- 137
Query: 121 MLLNPEELFEET-----------------TETESVNVVSGERKSELLGMSTRGEKRIKPS 180
+L+ LF T + NV++ + + EK KPS
Sbjct: 138 VLIILRRLFLSTGRALTYIHQGELTVFFNNKEIKFNVINAMK----FPLDDESEKTTKPS 197
Query: 181 TEEPPELELKPLPNHLKYAYLGEMRLCP 191
EP ELELKPLPNHLKY YLGE P
Sbjct: 198 VGEPLELELKPLPNHLKYEYLGENDTLP 217
BLAST of PI0009224 vs. ExPASy TrEMBL
Match:
A0A5A7UF79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00260 PE=4 SV=1)
HSP 1 Score: 173.7 bits (439), Expect = 7.3e-40
Identity = 101/182 (55.49%), Postives = 124/182 (68.13%), Query Frame = 0
Query: 13 TSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSIFKKLEL-GVQPT 72
TSD+FKNG+PEKMT+P SFT+PCSIG MDLGRALC+L INLM LSIFKKLE+ VQPT
Sbjct: 70 TSDIFKNGMPEKMTNPSSFTVPCSIGEMDLGRALCNLRVSINLMLLSIFKKLEIREVQPT 129
Query: 73 LMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADREEEASMLLNPEELFEET 132
+RL F D+ IAKPE +I++ D+ + +F L + +E L + EE FEE
Sbjct: 130 HIRLYFADKFIAKPEDKIKDFPTD-DENCNVIEF--LGWNYFEKEAYQELFSTEEFFEED 189
Query: 133 TET---ESVNVVSGERKSELLGMSTRGEKRIKPSTEEPPELELKPLPNHLKYAYLGEMRL 191
+ + VNVVS E+K E L + +GEK+ KPS EEPPELELK LPNHLKY YL E
Sbjct: 190 DPSYILKEVNVVSSEKKFESLDLQIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDT 248
BLAST of PI0009224 vs. ExPASy TrEMBL
Match:
A0A5A7VJ95 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00710 PE=4 SV=1)
HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 88/115 (76.52%), Postives = 98/115 (85.22%), Query Frame = 0
Query: 2 NDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSIF 61
NDCETVALT TSD+ KNG P+KMTD SFT+PCSI MDLG LCDLGA INLMPLSIF
Sbjct: 97 NDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIF 156
Query: 62 KKLEL-GVQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADRE 116
KKLE+ VQP MRLQFVDRSIAK EG+IE++LVKVDKFLF ADF+ILDYEA++E
Sbjct: 157 KKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQE 211
BLAST of PI0009224 vs. ExPASy TrEMBL
Match:
A0A1S3CN55 (uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=4 SV=1)
HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 88/115 (76.52%), Postives = 98/115 (85.22%), Query Frame = 0
Query: 2 NDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSIF 61
NDCETVALT TSD+ KNG P+KMTD SFT+PCSI MDLG LCDLGA INLMPLSIF
Sbjct: 8 NDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIF 67
Query: 62 KKLEL-GVQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADRE 116
KKLE+ VQP MRLQFVDRSIAK EG+IE++LVKVDKFLF ADF+ILDYEA++E
Sbjct: 68 KKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQE 122
BLAST of PI0009224 vs. ExPASy TrEMBL
Match:
A0A5D3E346 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00370 PE=4 SV=1)
HSP 1 Score: 166.8 bits (421), Expect = 9.0e-38
Identity = 97/162 (59.88%), Postives = 111/162 (68.52%), Query Frame = 0
Query: 1 MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSI 60
MNDCETVALTQ TS+VFKNGV +KM DP SF + C IG MDLGRALCD+G LMPL I
Sbjct: 1 MNDCETVALTQTTSNVFKNGVAKKMKDPRSFMVHCLIGGMDLGRALCDIGVSTYLMPLCI 60
Query: 61 FKKLELG-VQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADRE---- 120
FKKLE+G VQPT MR+QF +RSIAKPEG+IE+VLVKVDKFLF A FVILDY + E
Sbjct: 61 FKKLEIGEVQPTHMRVQFANRSIAKPEGKIEDVLVKVDKFLFSAGFVILDYRVNWEGGTI 120
Query: 121 ------EEASMLLNPEELFEETTETESVNVVSGERKSELLGM 152
S L N E + E V+ VSG RK + L +
Sbjct: 121 AMKKSIMNCSTLKNVFEEEDPEYVLEEVSAVSGARKFKSLDL 162
BLAST of PI0009224 vs. NCBI nr
Match:
KAA0037872.1 (uncharacterized protein E6C27_scaffold36G00360 [Cucumis melo var. makuwa] >TYJ98010.1 uncharacterized protein E5676_scaffold487G00330 [Cucumis melo var. makuwa])
HSP 1 Score: 196.4 bits (498), Expect = 2.2e-46
Identity = 114/208 (54.81%), Postives = 133/208 (63.94%), Query Frame = 0
Query: 1 MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSI 60
+ND +T+AL Q TSD++KNGV EKMT PGSF +PCSI MDLG LCDLGA INLMPLSI
Sbjct: 18 INDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSI 77
Query: 61 FKKLEL-GVQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADREEEAS 120
FKKL++ VQPT MR Q DRSI P+G+IE+VLVKVDKFLF ADF+ILDYEAD E
Sbjct: 78 FKKLKIKEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEE---- 137
Query: 121 MLLNPEELFEET-----------------TETESVNVVSGERKSELLGMSTRGEKRIKPS 180
+L+ LF T + NV++ + + EK KPS
Sbjct: 138 VLIILRRLFLSTGRALTYIHQGELTVFFNNKEIKFNVINAMK----FPLDDESEKTTKPS 197
Query: 181 TEEPPELELKPLPNHLKYAYLGEMRLCP 191
EP ELELKPLPNHLKY YLGE P
Sbjct: 198 VGEPLELELKPLPNHLKYEYLGENDTLP 217
BLAST of PI0009224 vs. NCBI nr
Match:
XP_038889559.1 (uncharacterized protein LOC120079447 [Benincasa hispida])
HSP 1 Score: 180.3 bits (456), Expect = 1.6e-41
Identity = 103/208 (49.52%), Postives = 132/208 (63.46%), Query Frame = 0
Query: 1 MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSI 60
+N+ E + L Q + + N +P+K DPGSFT+PCSIG + +G ALC LGA INLM LSI
Sbjct: 49 INETEVIVLMQECNALVSNRLPKKQKDPGSFTIPCSIGGLGMGHALCHLGASINLMSLSI 108
Query: 61 FKKLELG-VQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADREEEAS 120
FKKLE+G QPT + LQ V+R I PEG+IE+VLVKVD F+F DF+ILDYEAD++E
Sbjct: 109 FKKLEIGEAQPTSVTLQLVNRMIKYPEGKIEDVLVKVDNFIFPTDFIILDYEADKDEVKF 168
Query: 121 MLLN-----------------PEELFEETTETESVNVVSGERKSELLGMSTRGEKRIKPS 180
+LN PEE E T E + + ++ E +S R K + PS
Sbjct: 169 NVLNALKFPDSEECQLNIIEFPEE--EVTQVCEVLALEENMKEPEPPSLSERRTKPMHPS 228
Query: 181 TEEPPELELKPLPNHLKYAYLGEMRLCP 191
EEPPELELKPLP+HLKYA+LG + P
Sbjct: 229 LEEPPELELKPLPSHLKYAFLGTNKTLP 254
BLAST of PI0009224 vs. NCBI nr
Match:
XP_038896012.1 (uncharacterized protein LOC120084193 [Benincasa hispida])
HSP 1 Score: 175.3 bits (443), Expect = 5.2e-40
Identity = 105/235 (44.68%), Postives = 128/235 (54.47%), Query Frame = 0
Query: 1 MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSI 60
+ D + +ALT + + N +P K DPGSFT+PCSIG +D+G LCDLGA INLMPLSI
Sbjct: 46 LGDKKVIALTHECNTLVNNSLPRKQKDPGSFTIPCSIGRLDVGHVLCDLGASINLMPLSI 105
Query: 61 FKKLELG-VQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADRE---- 120
FKKL +G QPT + LQ DR+I PEG IE+VLVKVD F+FLADF+ILD EADRE
Sbjct: 106 FKKLGIGEAQPTSVTLQLADRTIKYPEGNIEDVLVKVDNFIFLADFIILDCEADREVPII 165
Query: 121 ----------------------------------------EEASMLLNPEELFEETTETE 180
+ LN EL EE T
Sbjct: 166 LRRPFLAIGKVLIDMHKGELTMRVDNQEVKFNVLNALKFPDNEDCQLNSIELPEEETHVC 225
Query: 181 SVNVVSGERKSELLGMSTRGEKRIKPSTEEPPELELKPLPNHLKYAYLGEMRLCP 191
V + ++S L +S + K PS EEPPELELK LP+HLKYA+LG P
Sbjct: 226 EVLALENLKESNPLSLSEQRTKPTHPSLEEPPELELKQLPSHLKYAFLGTNNTLP 280
BLAST of PI0009224 vs. NCBI nr
Match:
XP_030502183.1 (uncharacterized protein LOC115717351 [Cannabis sativa])
HSP 1 Score: 174.1 bits (440), Expect = 1.2e-39
Identity = 109/268 (40.67%), Postives = 144/268 (53.73%), Query Frame = 0
Query: 1 MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSI 60
+ + ETVALT+ S + K+ +P K+ DPGSFT+PCSIG D+GRALCDLGA INLMP+SI
Sbjct: 119 LGEFETVALTEGCSAMLKSKIPPKLKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSI 178
Query: 61 FKKLELG-VQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADRE---- 120
FKKL +G +PT + LQ DRS+A PEG+IE+VLV+VDKF+F ADF+ILDYEADR+
Sbjct: 179 FKKLGIGEARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPII 238
Query: 121 -----------------EEASMLLNPEELF----------EETTETESVNVVSG------ 180
EE +M +N +++ +E E ++V+
Sbjct: 239 LGRSFLATGRTLIDVQNEELTMRVNDQKVTFNVFNAMRFPDEIEECSRISVIDSIVAEKF 298
Query: 181 ----------------------------------------ERKSELLGMSTRGEKRIKPS 191
++ E L + K KPS
Sbjct: 299 HKEACKDEKFISSFDELEDLSEDEDNQVAWVEPLQPMPKFKKPFESLELKESNFKPPKPS 358
BLAST of PI0009224 vs. NCBI nr
Match:
KAA0052866.1 (uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04359.1 uncharacterized protein E5676_scaffold675G00260 [Cucumis melo var. makuwa])
HSP 1 Score: 173.7 bits (439), Expect = 1.5e-39
Identity = 101/182 (55.49%), Postives = 124/182 (68.13%), Query Frame = 0
Query: 13 TSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSIFKKLEL-GVQPT 72
TSD+FKNG+PEKMT+P SFT+PCSIG MDLGRALC+L INLM LSIFKKLE+ VQPT
Sbjct: 70 TSDIFKNGMPEKMTNPSSFTVPCSIGEMDLGRALCNLRVSINLMLLSIFKKLEIREVQPT 129
Query: 73 LMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADREEEASMLLNPEELFEET 132
+RL F D+ IAKPE +I++ D+ + +F L + +E L + EE FEE
Sbjct: 130 HIRLYFADKFIAKPEDKIKDFPTD-DENCNVIEF--LGWNYFEKEAYQELFSTEEFFEED 189
Query: 133 TET---ESVNVVSGERKSELLGMSTRGEKRIKPSTEEPPELELKPLPNHLKYAYLGEMRL 191
+ + VNVVS E+K E L + +GEK+ KPS EEPPELELK LPNHLKY YL E
Sbjct: 190 DPSYILKEVNVVSSEKKFESLDLQIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDT 248
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BDT2 | 1.1e-46 | 54.81 | RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
A0A5A7UF79 | 7.3e-40 | 55.49 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VJ95 | 1.3e-39 | 76.52 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A1S3CN55 | 1.3e-39 | 76.52 | uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=... | [more] |
A0A5D3E346 | 9.0e-38 | 59.88 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0037872.1 | 2.2e-46 | 54.81 | uncharacterized protein E6C27_scaffold36G00360 [Cucumis melo var. makuwa] >TYJ98... | [more] |
XP_038889559.1 | 1.6e-41 | 49.52 | uncharacterized protein LOC120079447 [Benincasa hispida] | [more] |
XP_038896012.1 | 5.2e-40 | 44.68 | uncharacterized protein LOC120084193 [Benincasa hispida] | [more] |
XP_030502183.1 | 1.2e-39 | 40.67 | uncharacterized protein LOC115717351 [Cannabis sativa] | [more] |
KAA0052866.1 | 1.5e-39 | 55.49 | uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04... | [more] |
Match Name | E-value | Identity | Description | |