PI0009224 (gene) Melon (PI 482460) v1

Overview
NamePI0009224
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionDNA-directed DNA polymerase
Locationchr07: 13948488 .. 13949246 (-)
RNA-Seq ExpressionPI0009224
SyntenyPI0009224
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGACTGCGAAACAGTAGCTCTAACGCAGGTAACGAGCGACGTCTTCAAGAATGGGGTACCCGAGAAGATGACAGACCCTGGTAGCTTCACAATGCCATGCTCAATAGGCTACATGGATCTAGGTCGTGCACTATGCGATCTGGGAGCCAGGATTAACCTGATGCCCCTCTCCATCTTCAAGAAATTGGAGCTAGGGGTGCAGCCAACACTCATGAGGCTCCAATTCGTTGATAGATCCATCGCCAAGCCTGAAGGAAGAATTGAAAACGTTTTGGTTAAGGTGGATAAATTCTTGTTCCTCGCTGACTTCGTCATTCTGGATTACGAAGCGGATCGGGAGGTGCCAATTATCTTGGGGCAGCCATTCCTGTCAACTGGTCGCGTCCTAATAGATGTCCACCAAGAGGAATTAACTCTTCGTTTGAATGATGAGGAGATCAAGTTCAACGTCGCAAACGCCATGAAATTCCCCTCTGACGAAAGCTGCAGCGCAATAGAATCCTTCAATTGGGATTATTGCGAGGAAGAAGCTTCTATGTTGCTCAACCCTGAAGAATTGTTTGAAGAAACAACAGAGACAGAAAGTGTCAACGTCGTATCTGGCGAAAGGAAATCAGAACTATTGGGTATGTCAACCCGAGGCGAGAAGAGAATTAAGCCATCCACAGAGGAACCACCAGAACTAGAGCTAAAGCCATTGCCAAACCACCTTAAATATGCATATTTGGGGGAAATGAGACTCTGCCCGTCATAA

mRNA sequence

ATGAATGACTGCGAAACAGTAGCTCTAACGCAGGTAACGAGCGACGTCTTCAAGAATGGGGTACCCGAGAAGATGACAGACCCTGGTAGCTTCACAATGCCATGCTCAATAGGCTACATGGATCTAGGTCGTGCACTATGCGATCTGGGAGCCAGGATTAACCTGATGCCCCTCTCCATCTTCAAGAAATTGGAGCTAGGGGTGCAGCCAACACTCATGAGGCTCCAATTCGTTGATAGATCCATCGCCAAGCCTGAAGGAAGAATTGAAAACGTTTTGGTTAAGGTGGATAAATTCTTGTTCCTCGCTGACTTCGTCATTCTGGATTACGAAGCGGATCGGGAGGAAGAAGCTTCTATGTTGCTCAACCCTGAAGAATTGTTTGAAGAAACAACAGAGACAGAAAGTGTCAACGTCGTATCTGGCGAAAGGAAATCAGAACTATTGGGTATGTCAACCCGAGGCGAGAAGAGAATTAAGCCATCCACAGAGGAACCACCAGAACTAGAGCTAAAGCCATTGCCAAACCACCTTAAATATGCATATTTGGGGGAAATGAGACTCTGCCCGTCATAA

Coding sequence (CDS)

ATGAATGACTGCGAAACAGTAGCTCTAACGCAGGTAACGAGCGACGTCTTCAAGAATGGGGTACCCGAGAAGATGACAGACCCTGGTAGCTTCACAATGCCATGCTCAATAGGCTACATGGATCTAGGTCGTGCACTATGCGATCTGGGAGCCAGGATTAACCTGATGCCCCTCTCCATCTTCAAGAAATTGGAGCTAGGGGTGCAGCCAACACTCATGAGGCTCCAATTCGTTGATAGATCCATCGCCAAGCCTGAAGGAAGAATTGAAAACGTTTTGGTTAAGGTGGATAAATTCTTGTTCCTCGCTGACTTCGTCATTCTGGATTACGAAGCGGATCGGGAGGAAGAAGCTTCTATGTTGCTCAACCCTGAAGAATTGTTTGAAGAAACAACAGAGACAGAAAGTGTCAACGTCGTATCTGGCGAAAGGAAATCAGAACTATTGGGTATGTCAACCCGAGGCGAGAAGAGAATTAAGCCATCCACAGAGGAACCACCAGAACTAGAGCTAAAGCCATTGCCAAACCACCTTAAATATGCATATTTGGGGGAAATGAGACTCTGCCCGTCATAA

Protein sequence

MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSIFKKLELGVQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADREEEASMLLNPEELFEETTETESVNVVSGERKSELLGMSTRGEKRIKPSTEEPPELELKPLPNHLKYAYLGEMRLCPS
Homology
BLAST of PI0009224 vs. ExPASy TrEMBL
Match: A0A5D3BDT2 (RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00330 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 114/208 (54.81%), Postives = 133/208 (63.94%), Query Frame = 0

Query: 1   MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSI 60
           +ND +T+AL Q TSD++KNGV EKMT PGSF +PCSI  MDLG  LCDLGA INLMPLSI
Sbjct: 18  INDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSI 77

Query: 61  FKKLEL-GVQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADREEEAS 120
           FKKL++  VQPT MR Q  DRSI  P+G+IE+VLVKVDKFLF ADF+ILDYEAD E    
Sbjct: 78  FKKLKIKEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEE---- 137

Query: 121 MLLNPEELFEET-----------------TETESVNVVSGERKSELLGMSTRGEKRIKPS 180
           +L+    LF  T                  +    NV++  +      +    EK  KPS
Sbjct: 138 VLIILRRLFLSTGRALTYIHQGELTVFFNNKEIKFNVINAMK----FPLDDESEKTTKPS 197

Query: 181 TEEPPELELKPLPNHLKYAYLGEMRLCP 191
             EP ELELKPLPNHLKY YLGE    P
Sbjct: 198 VGEPLELELKPLPNHLKYEYLGENDTLP 217

BLAST of PI0009224 vs. ExPASy TrEMBL
Match: A0A5A7UF79 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00260 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 7.3e-40
Identity = 101/182 (55.49%), Postives = 124/182 (68.13%), Query Frame = 0

Query: 13  TSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSIFKKLEL-GVQPT 72
           TSD+FKNG+PEKMT+P SFT+PCSIG MDLGRALC+L   INLM LSIFKKLE+  VQPT
Sbjct: 70  TSDIFKNGMPEKMTNPSSFTVPCSIGEMDLGRALCNLRVSINLMLLSIFKKLEIREVQPT 129

Query: 73  LMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADREEEASMLLNPEELFEET 132
            +RL F D+ IAKPE +I++     D+   + +F  L +    +E    L + EE FEE 
Sbjct: 130 HIRLYFADKFIAKPEDKIKDFPTD-DENCNVIEF--LGWNYFEKEAYQELFSTEEFFEED 189

Query: 133 TET---ESVNVVSGERKSELLGMSTRGEKRIKPSTEEPPELELKPLPNHLKYAYLGEMRL 191
             +   + VNVVS E+K E L +  +GEK+ KPS EEPPELELK LPNHLKY YL E   
Sbjct: 190 DPSYILKEVNVVSSEKKFESLDLQIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDT 248

BLAST of PI0009224 vs. ExPASy TrEMBL
Match: A0A5A7VJ95 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00710 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 88/115 (76.52%), Postives = 98/115 (85.22%), Query Frame = 0

Query: 2   NDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSIF 61
           NDCETVALT  TSD+ KNG P+KMTD  SFT+PCSI  MDLG  LCDLGA INLMPLSIF
Sbjct: 97  NDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIF 156

Query: 62  KKLEL-GVQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADRE 116
           KKLE+  VQP  MRLQFVDRSIAK EG+IE++LVKVDKFLF ADF+ILDYEA++E
Sbjct: 157 KKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQE 211

BLAST of PI0009224 vs. ExPASy TrEMBL
Match: A0A1S3CN55 (uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.3e-39
Identity = 88/115 (76.52%), Postives = 98/115 (85.22%), Query Frame = 0

Query: 2   NDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSIF 61
           NDCETVALT  TSD+ KNG P+KMTD  SFT+PCSI  MDLG  LCDLGA INLMPLSIF
Sbjct: 8   NDCETVALTLETSDILKNGAPKKMTDCRSFTVPCSINNMDLGHVLCDLGASINLMPLSIF 67

Query: 62  KKLEL-GVQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADRE 116
           KKLE+  VQP  MRLQFVDRSIAK EG+IE++LVKVDKFLF ADF+ILDYEA++E
Sbjct: 68  KKLEIEEVQPMHMRLQFVDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQE 122

BLAST of PI0009224 vs. ExPASy TrEMBL
Match: A0A5D3E346 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00370 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 9.0e-38
Identity = 97/162 (59.88%), Postives = 111/162 (68.52%), Query Frame = 0

Query: 1   MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSI 60
           MNDCETVALTQ TS+VFKNGV +KM DP SF + C IG MDLGRALCD+G    LMPL I
Sbjct: 1   MNDCETVALTQTTSNVFKNGVAKKMKDPRSFMVHCLIGGMDLGRALCDIGVSTYLMPLCI 60

Query: 61  FKKLELG-VQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADRE---- 120
           FKKLE+G VQPT MR+QF +RSIAKPEG+IE+VLVKVDKFLF A FVILDY  + E    
Sbjct: 61  FKKLEIGEVQPTHMRVQFANRSIAKPEGKIEDVLVKVDKFLFSAGFVILDYRVNWEGGTI 120

Query: 121 ------EEASMLLNPEELFEETTETESVNVVSGERKSELLGM 152
                    S L N  E  +     E V+ VSG RK + L +
Sbjct: 121 AMKKSIMNCSTLKNVFEEEDPEYVLEEVSAVSGARKFKSLDL 162

BLAST of PI0009224 vs. NCBI nr
Match: KAA0037872.1 (uncharacterized protein E6C27_scaffold36G00360 [Cucumis melo var. makuwa] >TYJ98010.1 uncharacterized protein E5676_scaffold487G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 196.4 bits (498), Expect = 2.2e-46
Identity = 114/208 (54.81%), Postives = 133/208 (63.94%), Query Frame = 0

Query: 1   MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSI 60
           +ND +T+AL Q TSD++KNGV EKMT PGSF +PCSI  MDLG  LCDLGA INLMPLSI
Sbjct: 18  INDFQTMALRQATSDIYKNGVLEKMTYPGSFKVPCSIDGMDLGHVLCDLGASINLMPLSI 77

Query: 61  FKKLEL-GVQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADREEEAS 120
           FKKL++  VQPT MR Q  DRSI  P+G+IE+VLVKVDKFLF ADF+ILDYEAD E    
Sbjct: 78  FKKLKIKEVQPTHMRFQLADRSITNPKGKIEDVLVKVDKFLFFADFIILDYEADEE---- 137

Query: 121 MLLNPEELFEET-----------------TETESVNVVSGERKSELLGMSTRGEKRIKPS 180
           +L+    LF  T                  +    NV++  +      +    EK  KPS
Sbjct: 138 VLIILRRLFLSTGRALTYIHQGELTVFFNNKEIKFNVINAMK----FPLDDESEKTTKPS 197

Query: 181 TEEPPELELKPLPNHLKYAYLGEMRLCP 191
             EP ELELKPLPNHLKY YLGE    P
Sbjct: 198 VGEPLELELKPLPNHLKYEYLGENDTLP 217

BLAST of PI0009224 vs. NCBI nr
Match: XP_038889559.1 (uncharacterized protein LOC120079447 [Benincasa hispida])

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-41
Identity = 103/208 (49.52%), Postives = 132/208 (63.46%), Query Frame = 0

Query: 1   MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSI 60
           +N+ E + L Q  + +  N +P+K  DPGSFT+PCSIG + +G ALC LGA INLM LSI
Sbjct: 49  INETEVIVLMQECNALVSNRLPKKQKDPGSFTIPCSIGGLGMGHALCHLGASINLMSLSI 108

Query: 61  FKKLELG-VQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADREEEAS 120
           FKKLE+G  QPT + LQ V+R I  PEG+IE+VLVKVD F+F  DF+ILDYEAD++E   
Sbjct: 109 FKKLEIGEAQPTSVTLQLVNRMIKYPEGKIEDVLVKVDNFIFPTDFIILDYEADKDEVKF 168

Query: 121 MLLN-----------------PEELFEETTETESVNVVSGERKSELLGMSTRGEKRIKPS 180
            +LN                 PEE  E T   E + +    ++ E   +S R  K + PS
Sbjct: 169 NVLNALKFPDSEECQLNIIEFPEE--EVTQVCEVLALEENMKEPEPPSLSERRTKPMHPS 228

Query: 181 TEEPPELELKPLPNHLKYAYLGEMRLCP 191
            EEPPELELKPLP+HLKYA+LG  +  P
Sbjct: 229 LEEPPELELKPLPSHLKYAFLGTNKTLP 254

BLAST of PI0009224 vs. NCBI nr
Match: XP_038896012.1 (uncharacterized protein LOC120084193 [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 5.2e-40
Identity = 105/235 (44.68%), Postives = 128/235 (54.47%), Query Frame = 0

Query: 1   MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSI 60
           + D + +ALT   + +  N +P K  DPGSFT+PCSIG +D+G  LCDLGA INLMPLSI
Sbjct: 46  LGDKKVIALTHECNTLVNNSLPRKQKDPGSFTIPCSIGRLDVGHVLCDLGASINLMPLSI 105

Query: 61  FKKLELG-VQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADRE---- 120
           FKKL +G  QPT + LQ  DR+I  PEG IE+VLVKVD F+FLADF+ILD EADRE    
Sbjct: 106 FKKLGIGEAQPTSVTLQLADRTIKYPEGNIEDVLVKVDNFIFLADFIILDCEADREVPII 165

Query: 121 ----------------------------------------EEASMLLNPEELFEETTETE 180
                                                   +     LN  EL EE T   
Sbjct: 166 LRRPFLAIGKVLIDMHKGELTMRVDNQEVKFNVLNALKFPDNEDCQLNSIELPEEETHVC 225

Query: 181 SVNVVSGERKSELLGMSTRGEKRIKPSTEEPPELELKPLPNHLKYAYLGEMRLCP 191
            V  +   ++S  L +S +  K   PS EEPPELELK LP+HLKYA+LG     P
Sbjct: 226 EVLALENLKESNPLSLSEQRTKPTHPSLEEPPELELKQLPSHLKYAFLGTNNTLP 280

BLAST of PI0009224 vs. NCBI nr
Match: XP_030502183.1 (uncharacterized protein LOC115717351 [Cannabis sativa])

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-39
Identity = 109/268 (40.67%), Postives = 144/268 (53.73%), Query Frame = 0

Query: 1   MNDCETVALTQVTSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSI 60
           + + ETVALT+  S + K+ +P K+ DPGSFT+PCSIG  D+GRALCDLGA INLMP+SI
Sbjct: 119 LGEFETVALTEGCSAMLKSKIPPKLKDPGSFTIPCSIGGRDVGRALCDLGASINLMPMSI 178

Query: 61  FKKLELG-VQPTLMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADRE---- 120
           FKKL +G  +PT + LQ  DRS+A PEG+IE+VLV+VDKF+F ADF+ILDYEADR+    
Sbjct: 179 FKKLGIGEARPTTVTLQLADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEADRDVPII 238

Query: 121 -----------------EEASMLLNPEELF----------EETTETESVNVVSG------ 180
                            EE +M +N +++           +E  E   ++V+        
Sbjct: 239 LGRSFLATGRTLIDVQNEELTMRVNDQKVTFNVFNAMRFPDEIEECSRISVIDSIVAEKF 298

Query: 181 ----------------------------------------ERKSELLGMSTRGEKRIKPS 191
                                                   ++  E L +     K  KPS
Sbjct: 299 HKEACKDEKFISSFDELEDLSEDEDNQVAWVEPLQPMPKFKKPFESLELKESNFKPPKPS 358

BLAST of PI0009224 vs. NCBI nr
Match: KAA0052866.1 (uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04359.1 uncharacterized protein E5676_scaffold675G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-39
Identity = 101/182 (55.49%), Postives = 124/182 (68.13%), Query Frame = 0

Query: 13  TSDVFKNGVPEKMTDPGSFTMPCSIGYMDLGRALCDLGARINLMPLSIFKKLEL-GVQPT 72
           TSD+FKNG+PEKMT+P SFT+PCSIG MDLGRALC+L   INLM LSIFKKLE+  VQPT
Sbjct: 70  TSDIFKNGMPEKMTNPSSFTVPCSIGEMDLGRALCNLRVSINLMLLSIFKKLEIREVQPT 129

Query: 73  LMRLQFVDRSIAKPEGRIENVLVKVDKFLFLADFVILDYEADREEEASMLLNPEELFEET 132
            +RL F D+ IAKPE +I++     D+   + +F  L +    +E    L + EE FEE 
Sbjct: 130 HIRLYFADKFIAKPEDKIKDFPTD-DENCNVIEF--LGWNYFEKEAYQELFSTEEFFEED 189

Query: 133 TET---ESVNVVSGERKSELLGMSTRGEKRIKPSTEEPPELELKPLPNHLKYAYLGEMRL 191
             +   + VNVVS E+K E L +  +GEK+ KPS EEPPELELK LPNHLKY YL E   
Sbjct: 190 DPSYILKEVNVVSSEKKFESLDLQIKGEKKTKPSIEEPPELELKSLPNHLKYVYLRENDT 248

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BDT21.1e-4654.81RT_RNaseH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7UF797.3e-4055.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VJ951.3e-3976.52Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3CN551.3e-3976.52uncharacterized protein LOC103502805 OS=Cucumis melo OX=3656 GN=LOC103502805 PE=... [more]
A0A5D3E3469.0e-3859.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0037872.12.2e-4654.81uncharacterized protein E6C27_scaffold36G00360 [Cucumis melo var. makuwa] >TYJ98... [more]
XP_038889559.11.6e-4149.52uncharacterized protein LOC120079447 [Benincasa hispida][more]
XP_038896012.15.2e-4044.68uncharacterized protein LOC120084193 [Benincasa hispida][more]
XP_030502183.11.2e-3940.67uncharacterized protein LOC115717351 [Cannabis sativa][more]
KAA0052866.11.5e-3955.49uncharacterized protein E6C27_scaffold33G00230 [Cucumis melo var. makuwa] >TYK04... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 10..123
e-value: 8.0E-15
score: 56.7
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 5..114
NoneNo IPR availablePANTHERPTHR33067:SF23SUBFAMILY NOT NAMEDcoord: 5..114
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 44..109
e-value: 7.87575E-9
score: 48.872

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0009224.1PI0009224.1mRNA