PI0009183 (gene) Melon (PI 482460) v1

Overview


Name	PI0009183
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Anaphase-promoting complex subunit 13
Location	chr11: 25906228 .. 25907271 (+)
RNA-Seq Expression	PI0009183
Synteny	PI0009183

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACTGCGTGTGCCTAAGGCAGAAGACACCGCCCAGCCGCAACTGAAGCTTCAACCGTCTTCCTCGTCCCTTCACGCAAGATTTCCACGCCGCCATTCCTCTTCATCAGTCACCCACTATTCGCTCACCACTCATCGACATTCCAGATCGCTCAGGCTACTGGTTGGTGATTTTGTCTCAGATCCGGCTGCATCCGGTCGCCGCCCTTCGATCCTTGACTCCCGTCGGTAAGCATCGTTTTCCCCTCATATTAAATTTGTTTCATGACCTTCATAACCCAACGTGAGACTCTTCCTCTAGATTTCCCCCACTTCGTTCTTCAATACTGAAGAAATTTTGGAATACCCATAATCTTGAAATCATAAAACTCCACAAATAAATGGTAATAATAGAAGCTGGAAGGTTGTCTACTCCTTCAATCTCCCTTGCTTGCCAATTCACTATCTTCCCCTTCAACTTCATTATATCACATTCCCTTTCAACAAAAATTAACTATTTGTGTATGACACAATACGCTCCGTCTTGTCCCAATTTGGACGTATTTGGAAAAATATTTTTTAAATTGATCGACATTTAGTAATTTTTTGAGCTTTTGTTAATAACTTACGAACTTATCTATCTCAAATTTCAGATATTGGGTTTTAGAATCTACCTTAATAAGAAAACACCAATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGGTAATTCTCAATCTTCATTTCTCTACAATCAAAGCTATGTGGCTTATTTAATCTAGTTTTTCTATCATTATCCTAGATCTTTTACTCCCTCCCGTGCTGGTTGTTCGGACTGATGACACTGAGGACTCAAGTATGTCTCCTAACTTATAACTCAATGTTCAATTAATAACACATGGAAAGATTATTCCTTTGATTGTGGTAACACATTCTAACCTGAAGCTTGTTTTTGCACTCTATATTAAATTTAGTACATGGAGTTCCTAAGTCAAGAATCAATGAGTCTCCAATGCTTTGA

mRNA sequence

ATGGTACTGCGTGTGCCTAAGGCAGAAGACACCGCCCAGCCGCAACTGAAGCTTCAACCGTCTTCCTCGTCCCTTCACGCAAGATTTCCACGCCGCCATTCCTCTTCATCAGTCACCCACTATTCGCTCACCACTCATCGACATTCCAGATCGCTCAGGCTACTGGTTGGTGATTTTATATTGGGTTTTAGAATCTACCTTAATAAGAAAACACCAATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGATCTTTTACTCCCTCCCGTGCTGGTTGTTCGGACTGATGACACTGAGGACTCAATACATGGAGTTCCTAAGTCAAGAATCAATGAGTCTCCAATGCTTTGA

Coding sequence (CDS)

ATGGTACTGCGTGTGCCTAAGGCAGAAGACACCGCCCAGCCGCAACTGAAGCTTCAACCGTCTTCCTCGTCCCTTCACGCAAGATTTCCACGCCGCCATTCCTCTTCATCAGTCACCCACTATTCGCTCACCACTCATCGACATTCCAGATCGCTCAGGCTACTGGTTGGTGATTTTATATTGGGTTTTAGAATCTACCTTAATAAGAAAACACCAATGGCAGAACTTAGTCTGGGTATATTGATAGACATTCTAGATGAGGAATGGATGAGAGACACACTCCCTCATGATGATCTTTTACTCCCTCCCGTGCTGGTTGTTCGGACTGATGACACTGAGGACTCAATACATGGAGTTCCTAAGTCAAGAATCAATGAGTCTCCAATGCTTTGA

Protein sequence

MVLRVPKAEDTAQPQLKLQPSSSSLHARFPRRHSSSSVTHYSLTTHRHSRSLRLLVGDFILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDSIHGVPKSRINESPML

Homology

[Close]

BLAST of PI0009183 vs. ExPASy Swiss-Prot
Match: Q8L981 (Anaphase-promoting complex subunit 13 OS=Arabidopsis thaliana OX=3702 GN=APC13 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.5e-13
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 73  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDS 116
           MAE+SLG+LIDI+DEEWMRDTLP DDL LPPVL V+TDDTE++
Sbjct: 1   MAEVSLGMLIDIVDEEWMRDTLPDDDLPLPPVLAVKTDDTEET 43

[Close]

BLAST of PI0009183 vs. ExPASy TrEMBL
Match: A0A5D3CLL3 (Anaphase-promoting complex subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00110 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.7e-44
Identity = 105/138 (76.09%), Postives = 106/138 (76.81%), Query Frame = 0


Query: 1   MVLRVPKAEDTA-----QPQLKLQPSSSSLHARFPRRHSSSSVTHYSLTTHRHSRSLRLL 60
           MVLRVPK EDTA     QPQLKL PS SSL+ARFPRRHSSSSV HY LTTH HSRSLRLL
Sbjct: 1   MVLRVPKEEDTAPVLNSQPQLKLHPSLSSLNARFPRRHSSSSVAHYLLTTHWHSRSLRLL 60

Query: 61  VGDF------------------ILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHD 116
           VGD                   ILGFR YLNKKTPMAELSLGILIDILDEEWMRDTLPHD
Sbjct: 61  VGDLSQIRLHPVAALRSLTPTSILGFRTYLNKKTPMAELSLGILIDILDEEWMRDTLPHD 120

[Close]

BLAST of PI0009183 vs. ExPASy TrEMBL
Match: A0A1S3CA59 (Anaphase-promoting complex subunit 13 OS=Cucumis melo OX=3656 GN=LOC103498390 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.7e-44
Identity = 105/138 (76.09%), Postives = 106/138 (76.81%), Query Frame = 0


Query: 1   MVLRVPKAEDTA-----QPQLKLQPSSSSLHARFPRRHSSSSVTHYSLTTHRHSRSLRLL 60
           MVLRVPK EDTA     QPQLKL PS SSL+ARFPRRHSSSSV HY LTTH HSRSLRLL
Sbjct: 1   MVLRVPKEEDTAPVLNSQPQLKLHPSLSSLNARFPRRHSSSSVAHYLLTTHWHSRSLRLL 60

Query: 61  VGDF------------------ILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHD 116
           VGD                   ILGFR YLNKKTPMAELSLGILIDILDEEWMRDTLPHD
Sbjct: 61  VGDLSQIRLHPVAALRSLTPTSILGFRTYLNKKTPMAELSLGILIDILDEEWMRDTLPHD 120

[Close]

BLAST of PI0009183 vs. ExPASy TrEMBL
Match: A0A5A7TMF9 (Anaphase-promoting complex subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00500 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 4.8e-43
Identity = 104/138 (75.36%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MVLRVPKAEDTA-----QPQLKLQPSSSSLHARFPRRHSSSSVTHYSLTTHRHSRSLRLL 60
           MVLRVPK EDTA     QPQLK  PS SSL ARFPRRHSSSSV HYSLTTH HSRSLR L
Sbjct: 1   MVLRVPKEEDTAPVLNSQPQLKFHPSLSSLTARFPRRHSSSSVAHYSLTTHWHSRSLRPL 60

Query: 61  VGDF------------------ILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHD 116
           VGD                   ILGFR YLNKKTPMAELSLGILIDILDEEWMRDTLPHD
Sbjct: 61  VGDLSQIRLHPVAALRSLTPTSILGFRTYLNKKTPMAELSLGILIDILDEEWMRDTLPHD 120

[Close]

BLAST of PI0009183 vs. ExPASy TrEMBL
Match: A0A0A0LNL0 (Anaphase-promoting complex subunit 13 OS=Cucumis sativus OX=3659 GN=Csa_2G437080 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.7e-40
Identity = 95/120 (79.17%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 14  PQLKLQPSSSSLHARFPRRHSSSSVTHYSLTTHRHSRSLRLLVGD--------------- 73
           PQL L PS SSLHARFPR HSSSSVTHYSLTTHRHSRSLR LVGD               
Sbjct: 82  PQLNLHPSLSSLHARFPRCHSSSSVTHYSLTTHRHSRSLRPLVGDLSQIRLHSVSALRSL 141

Query: 74  ---FILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDS 116
               ILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVR DDTEDS
Sbjct: 142 TPTLILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDS 201

[Close]

BLAST of PI0009183 vs. ExPASy TrEMBL
Match: A0A6J1JH61 (Anaphase-promoting complex subunit 13 OS=Cucurbita maxima OX=3661 GN=LOC111484329 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 9.5e-15
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 73  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDS 116
           MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDS
Sbjct: 1   MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDS 43

[Close]

BLAST of PI0009183 vs. NCBI nr
Match: TYK11109.1 (anaphase-promoting complex subunit 13 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 105/138 (76.09%), Postives = 106/138 (76.81%), Query Frame = 0


Query: 1   MVLRVPKAEDTA-----QPQLKLQPSSSSLHARFPRRHSSSSVTHYSLTTHRHSRSLRLL 60
           MVLRVPK EDTA     QPQLKL PS SSL+ARFPRRHSSSSV HY LTTH HSRSLRLL
Sbjct: 1   MVLRVPKEEDTAPVLNSQPQLKLHPSLSSLNARFPRRHSSSSVAHYLLTTHWHSRSLRLL 60

Query: 61  VGDF------------------ILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHD 116
           VGD                   ILGFR YLNKKTPMAELSLGILIDILDEEWMRDTLPHD
Sbjct: 61  VGDLSQIRLHPVAALRSLTPTSILGFRTYLNKKTPMAELSLGILIDILDEEWMRDTLPHD 120

[Close]

BLAST of PI0009183 vs. NCBI nr
Match: XP_008459198.1 (PREDICTED: uncharacterized protein LOC103498390 [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 105/138 (76.09%), Postives = 106/138 (76.81%), Query Frame = 0


Query: 1   MVLRVPKAEDTA-----QPQLKLQPSSSSLHARFPRRHSSSSVTHYSLTTHRHSRSLRLL 60
           MVLRVPK EDTA     QPQLKL PS SSL+ARFPRRHSSSSV HY LTTH HSRSLRLL
Sbjct: 1   MVLRVPKEEDTAPVLNSQPQLKLHPSLSSLNARFPRRHSSSSVAHYLLTTHWHSRSLRLL 60

Query: 61  VGDF------------------ILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHD 116
           VGD                   ILGFR YLNKKTPMAELSLGILIDILDEEWMRDTLPHD
Sbjct: 61  VGDLSQIRLHPVAALRSLTPTSILGFRTYLNKKTPMAELSLGILIDILDEEWMRDTLPHD 120

[Close]

BLAST of PI0009183 vs. NCBI nr
Match: KAA0042977.1 (anaphase-promoting complex subunit 13 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-42
Identity = 104/138 (75.36%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MVLRVPKAEDTA-----QPQLKLQPSSSSLHARFPRRHSSSSVTHYSLTTHRHSRSLRLL 60
           MVLRVPK EDTA     QPQLK  PS SSL ARFPRRHSSSSV HYSLTTH HSRSLR L
Sbjct: 1   MVLRVPKEEDTAPVLNSQPQLKFHPSLSSLTARFPRRHSSSSVAHYSLTTHWHSRSLRPL 60

Query: 61  VGDF------------------ILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHD 116
           VGD                   ILGFR YLNKKTPMAELSLGILIDILDEEWMRDTLPHD
Sbjct: 61  VGDLSQIRLHPVAALRSLTPTSILGFRTYLNKKTPMAELSLGILIDILDEEWMRDTLPHD 120

[Close]

BLAST of PI0009183 vs. NCBI nr
Match: KGN63398.1 (hypothetical protein Csa_022587 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 3.5e-40
Identity = 95/120 (79.17%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 14  PQLKLQPSSSSLHARFPRRHSSSSVTHYSLTTHRHSRSLRLLVGD--------------- 73
           PQL L PS SSLHARFPR HSSSSVTHYSLTTHRHSRSLR LVGD               
Sbjct: 82  PQLNLHPSLSSLHARFPRCHSSSSVTHYSLTTHRHSRSLRPLVGDLSQIRLHSVSALRSL 141

Query: 74  ---FILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDS 116
               ILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVR DDTEDS
Sbjct: 142 TPTLILGFRIYLNKKTPMAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRADDTEDS 201

[Close]

BLAST of PI0009183 vs. NCBI nr
Match: KAG6571185.1 (Anaphase-promoting complex subunit 13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-14
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 73  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDS 116
           MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDS
Sbjct: 1   MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDS 43

[Close]

BLAST of PI0009183 vs. TAIR 10
Match: AT1G73177.1 (bonsai )

HSP 1 Score: 74.7 bits (182), Expect = 6.1e-14
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 0


Query: 73  MAELSLGILIDILDEEWMRDTLPHDDLLLPPVLVVRTDDTEDS 116
           MAE+SLG+LIDI+DEEWMRDTLP DDL LPPVL V+TDDTE++
Sbjct: 1   MAEVSLGMLIDIVDEEWMRDTLPDDDLPLPPVLAVKTDDTEET 43

The following BLAST results are available for this feature:

BLAST of PI0009183 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L981	8.5e-13	79.07	Anaphase-promoting complex subunit 13 OS=Arabidopsis thaliana OX=3702 GN=APC13 P...	[more]

BLAST of PI0009183 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLL3	5.7e-44	76.09	Anaphase-promoting complex subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CA59	5.7e-44	76.09	Anaphase-promoting complex subunit 13 OS=Cucumis melo OX=3656 GN=LOC103498390 PE...	[more]
A0A5A7TMF9	4.8e-43	75.36	Anaphase-promoting complex subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LNL0	1.7e-40	79.17	Anaphase-promoting complex subunit 13 OS=Cucumis sativus OX=3659 GN=Csa_2G437080...	[more]
A0A6J1JH61	9.5e-15	100.00	Anaphase-promoting complex subunit 13 OS=Cucurbita maxima OX=3661 GN=LOC11148432...	[more]

BLAST of PI0009183 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11109.1	1.2e-43	76.09	anaphase-promoting complex subunit 13 isoform X2 [Cucumis melo var. makuwa]	[more]
XP_008459198.1	1.2e-43	76.09	PREDICTED: uncharacterized protein LOC103498390 [Cucumis melo]	[more]
KAA0042977.1	1.0e-42	75.36	anaphase-promoting complex subunit 13 isoform X2 [Cucumis melo var. makuwa]	[more]
KGN63398.1	3.5e-40	79.17	hypothetical protein Csa_022587 [Cucumis sativus]	[more]
KAG6571185.1	2.0e-14	100.00	Anaphase-promoting complex subunit 13, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of PI0009183 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73177.1	6.1e-14	79.07	bonsai	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
IPR008401	Apc13	PANTHER	PTHR28672	ANAPHASE-PROMOTING COMPLEX SUBUNIT 13	coord: 8..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009183.1	PI0009183.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0051301	cell division
biological_process	GO:0070979	protein K11-linked ubiquitination
cellular_component	GO:0005680	anaphase-promoting complex