PI0009146 (gene) Melon (PI 482460) v1

Overview
NamePI0009146
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionGag/pol protein
Locationchr06: 20991642 .. 20997831 (-)
RNA-Seq ExpressionPI0009146
SyntenyPI0009146
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACCGTCAGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACTTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGTAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTTCGAAGAGCTTCCTTCAATTTCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACCCTTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCAAAAGAAGAAAGGAGGAAAGGGGAAAGGTCCTGCTGTTGCTGCTAAGGGCAAGGGGAAGGCTAAGGTAGCCGACAAGGGGAAGTGCTTCCACTGCAATATGGATGGACATTGGAAGAGAAACTGCCCCAAGTACCTTGCTGAGAAGAAGAAGGAAAAAGAAGGTAAATATGATTTACTTGTTTTAGAAACTTGTTTAGTGGAAAATGACCAAAATGCTGGATACTTGATTTCAGGAGCCACTAATCATGTTTGTTCTTCTTTACAGAAAACTAGTTCCTTCCAGCAGCTCGAGGAGGGTGAAATGACGCTCAAGGTTGGAACGGGAACGCCATTTCAGCTTGTGCAGTGGGAGATGTGAAGTGTTTTTTAGAATAGATATTTAATCTTAGACAATTTGTATATAGTTCCTAAGATTAAAAGGAATCTTGTATCTATTTCTTGTCTTCTTGAACAATGTTACTCTATAAATTTTTCTTTAAATGAAGCGTTCATTTCTAAGAATGGTGTACACATTTGTTCAGCTAAGTTAGAAAAAAACTTGTATGTATTAAGACCTAACGAAGCGAAAGCAATTTTAAATCATGAGATGTTTAAAACTGCTAACACTCAAAATAAAAGGCAAAGAATTTCTCAAAATAACAATACTTATCTTTGGCATTTAAGATTAGGTCACATTAATCTCGATCGGATCGGGAGATTAGTAAAGAATGGACTTCTAAATGAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGAAAAATGACTAAAAGACTTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCCCTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTGAAAGCTCGAGGAGGTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCGTAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTGTTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAAGACTATATGATAGAACATGGAATTCAATCTCAACTCTCAGCACCAGGTACACCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAACCCTGTTAGACATGGTTCGTTCAATGATGAGCTATGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCAGTAGAGACTGCAGTTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTCTGAAACACCTTTCGAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCACTTCAGGATATGGGGTTGTCCAGCACACGTGCTAGTGACAAATCCCAAAAAGTTGGAACCTCGTTCAAGATTATGCCAATTTATTGGTTACCCTAAAGAAACGAGAGGTGGTCTATTCTTCGATCCACAAGAAAACAGAGTATTTGTATCGACAAACGCTACTTTCTTGGAAGAAGATCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGAATCAACAAGAGTTGTTGATGAAGCTGGTCCCTCATCAAGAGTTGATGAAACCAACGCATCAGGTCAGTCTCATCCTTCTCAATCGTTGAGATTGCCTCGACGCAGTGGGAGGTTGTATCACAACCTAACCGTTACTTGGGTTTAACTGAAACTCAGGTTTCATACCAGATGATGGTGTTGAGGATCCATTGTCCTATATACAGGCAATGAATGATGTAGACAAAGACCAATGGGTCAAAGTCATGGACCTTGAAATGGAGTCTATGTACTTCAATTCAGTATGGGAGCTTGTAGATCTACTGAAGGGGTGAAACCCATAGGGTGCAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGAGAAGGTACAGACCTTCAAAGCTAGACTTGTAGTAAAAGGGTACACCCAAAGGGAAGGGGTTGACTATGAGGAAACTTTTTCCCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTCCATAGCCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTGCTTTTCTAAATGGCAATCTTGAAGAGAGTATCTTTGTGTCTCAGCCCGAAGGGTTCATAACCCAAGGTCAGGAGCAAAAAGTTTGCAAGCTAAATCGATCCATTTATGGGTTGAAACAAGCATCCAGATCTTGGAACATTAGGTTTGATACCGCGATCAAATCTTATGGTTTTGACCAAAATGTTGATGAACCTTGTGTATACAAGAAAACTTTATGTGGACGATATCCTTCTCATTGGGAATGATATAGAATACCTAACTGATGTAAAAACTTGGCTAGCACCCCAATTCCAAATGAAAGATTTGGGAGAGGCACAGTATGTTCTTGGGATCCAAATCATAAGGGATCGTAAGAACAAAACGCTAGCTTTGTCTCAAGCAACCTATATCGACAAAATGTTGATTCGATATTCGATGCAGAACTCCAAGAATGGTTTATTACCTTTCAGACATGGGGTTCACTTGTCGAAGGAACAGTGTCCTAAGACACCTCAAGATGTTGAGGATATGAGACGTATTTCTTATGCCTCAGCTGTGGGCAGCTTAATGTATGCTATGTGTGCACTAGGCCAGACATTTGTTATGCAGTGGGAATAGTCAGTAGGTACCAATCCAACCCAGGGTTAGACCACTGGACAGTGGTTAAAATTATTCTCAAGTATCTTAGGAGAACGAGAGACTACATGCTTGTGTATGGAGCTAAGGATTTGATCCTTACAGGATATACTGACTCTGACTTCCAAACTGACAAGGATTCTAGAAAATCCACGTCGGGATCAGTGTTCACCCTGAACGAGGGAGCTGTTGTATGGCGTAGCATCAAGCAAGGATGCATTGCGGACTCCACCATGGAGGCTGAATACGTCGCTGCTTGTGAAGCAGCAAAAGAAGCAGTTTGGCTTAGGAAGTTCCTGCATGATTTGGAAGTTGTTCCAAACATGAACTTGCCCATCACTTTTTATTGTGACAACAGTGGGGCAGTAGCCAATTCTAAAGAACCTCGTAGCCACAAACGAGGGAAACACATAGAGAGGAAGTATCACCTGATACGGGAGATTGTGCAATGAGGGGATGTGATCGTTACCAAGATCGCTTCAGAGCACAACATTGCTGATCCGTTTACGAAGACTCTCACGGCTAAAGTGTTCGAGGGTCATCTAGAAAGTCTAGGTCTGCGAGATATGTTCATTAGGTGATCTAGGGCAAGTGGGAGATGTGTAATGGGTATGAGGATGCCCTAGTTTATTGTATTTGTATATATACGTTTTATGTAATATACTTGTACATTTTACCATTTCCAATGTTTGAGGATTGCTTTATTATGTACATCCCATAGACTACCACTAGGCTAGAGTTTTAGTCCAAGTGGGAGTTTGTTGGGTTTTATGTCCTACTCGTGGATAATAAATGTAATCCATTGACTGTGATTAATAAAAGTGTTATTATTATAATTTCAATAAAGCGTTATTGATTATAATATTAGTTTTGTCTTAATAACCTAAATCCAATAACTAACATCCTAAGTTGTTTGATGAGTCTTGAACTGTATGTGGAGACATACAAGGATCAATGTTCGAGATACAACTTAAAGGGTCTATAGTATAGGGATAAGGTTGGGTACCTTATCCTGGTAACACTATGGATATGGATCACTTTGTATTTGATACAAACGCAATGATCCAACGCGTTCGTGTAGGTGACATATGAGTGAGGGTATCCCATGCAATGAGTTTGCATAAGACCGGACCACGAAATAGTAACCACTAGATGTAACTCTGTTAACTAGTAAGGTTTCTATTTCATTAGGATGACCTAGGTAACTTAGTCTTAATCCTGAGTGTATTATGAACTCCTGTTTGTAAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGTCAGATTGTCGACTCAATATGATTATCATTTTGAGGACAAGACCGAGTGAGGTGCTGGGAACATAATCACACAAGATGGAACTCACTCATTCCCAACTTTTGGGTAAGTAGATGAGTGTTCCCTTAAATGGTGTCTCCGGGACTTGAACAAAGGGCCCTACCCTCTCTATGGCACAAGAGGGGTTTTTCTGTTTATTGGTTGGACCATAAACAGGTTGTTCATTAGAGGAGCACTGGTATTTAAGGACTAGAAGTAATCTAGGGGTAAAACGGTAATTTGACCCAGCTGGTGTTACGGACACTCGTGAAGGACTAACTTACTGTTATTGATCTATATCTATGGACACAGAAATATATCTACAGTGAGAAGAGTTCAGCTGTGAGTCTTTAGTGGAGTGTACACACAGTTAACGAATATTGATTAATGTGGTTAATGAGTTTAGCCAATTAATCTCATATCGTTGTAGCTTCTGATCTGTAGGTCCATTAGGTCCCCTTCCTAGCTCGTAAAAGGTATTGAGATTAATATATATTGGTTGTAATTTGAAATGTTCAAATTTACTTTGGGAATTAATATAATGTATGGTGATACATTATAATATAAAATTTATATTTTTTTAATTAAACTTTATTATATAAATTTAATTTTGGATATGATTCAAAATTAATTTACAAGAGAATAAAATATTTGAATGAGTTCAAAATATTAATTTAATATGAATTAGATTTATATTAAAATTATAGGTTAAAATTTAATGCATATATGATACACATTAAAACTATAGGTTATGAGAGAAATTTATATTTGAATATGATTCATAATTTAGCAAATAATTAATTGGAGAATTAATTAATAGTTTGGTTTAATTTTATTTAATTAAATTTGATTTAATTAAATTAATTAAATTAAAACTATAGGTTATGTGAGAGATGTTCATTTGAATATGATTTAAATATGATTTAATTAATTTTTAATTAAATATGATTTAATTAATTATTAATTAAATATAATTTAATTAATTATTTTAATTATTTTAATTAATTAGTTAAATTAATAAGGAACGTGGGTGGTTCTCCCACGTTCCCCGATTCTCTCCAACTTCCCTCTTCTTCAGTCGAAGAAGAGGGAGTGATACGCAGGCAGAAGAACAGACGAACGAAGCTTTTTCTGGAAAAATTTTCATTCTGCAATTTTCTCTCAAAAGATAAACTCTCTGCAAATATTCTCTTCCCATTTATTGGTTCCCACAAACCAATTCTCAGCCCAGAGGATAGTGAGGTTACCAAGTGGTGGTGGCAGTAGATTATACCGAAGTCCCAATACAGAGTCGACAACGTACGTAAGTTTATTTCTTCTCTATATTTTTTAATAAAGCATGCTTAACTGTCTTTTTAGCCAATGTATGAGTATTTTAGGAATTCCAAATTAAATTGAAAAATAGTTCTGTGAATTTATTCCGCTGCGTAAGGGCTTTAATCCCTTTAGTGACGTGGTTGAGGTAAGGGATTCCTACTACCAGACCCTAACTAAATAGAGATGTACTGTATGTGATGTTTCGATGGATGTGTGAATGTGATTTAGTACATCGTGATTGGCTTGACTGGATTTGTGATCATGTTGGGATATCCTGTTGATTGA

mRNA sequence

ATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACCGTCAGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACTTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGTAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCAAAAGAAGAAAGGAGGAAAGGGGAAAGCCCAGAGGATAGTGAGGTTACCAAGTGGTGGTGGCAGTAGATTATACCGAAGTCCCAATACAGAGTCGACAACGTACTACATCGTGATTGGCTTGACTGGATTTGTGATCATGTTGGGATATCCTGTTGATTGA

Coding sequence (CDS)

ATGTCCTCCTTTCCCTGTTCGAAATGCATCCCAGACCGTCAGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACTTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGTAGAAACGAACGGGGCGGTCATTGACGAGCAAAGTCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCAAAAGAAGAAAGGAGGAAAGGGGAAAGCCCAGAGGATAGTGAGGTTACCAAGTGGTGGTGGCAGTAGATTATACCGAAGTCCCAATACAGAGTCGACAACGTACTACATCGTGATTGGCTTGACTGGATTTGTGATCATGTTGGGATATCCTGTTGATTGA

Protein sequence

MSSFPCSKCIPDRQDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYFYNARMKEGQSVREHVLDMMVQFNVVETNGAVIDEQSQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKAQRIVRLPSGGGSRLYRSPNTESTTYYIVIGLTGFVIMLGYPVD
Homology
[Close]
BLAST of PI0009146 vs. ExPASy TrEMBL
Match: A0A5A7TFX6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003960 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 3.0e-47
Identity = 111/172 (64.53%), Postives = 127/172 (73.84%), Query Frame = 0 

Query: 4   FPCSKCIPDRQDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQP 63
           FP        +DAYD WTKAN+KA +YILASMSD+LSKK E MVTARQIMDSL+E+FGQ 
Sbjct: 18  FPTQNASQSVKDAYDHWTKANDKACLYILASMSDILSKKLEIMVTARQIMDSLREIFGQS 77

Query: 64  SIQIRHEAIKYFYNARMKEGQSVREHVLDMMVQFNVVETNGAVIDEQSQTFQSLMKNKGQ 123
           SIQI+ EAIKY YN RMKE QS+REHVL+M+V FNVVE NGAV DE+SQ+       KGQ
Sbjct: 78  SIQIKQEAIKYVYNVRMKEDQSIREHVLNMIVNFNVVEMNGAVFDEKSQSL------KGQ 137

Query: 124 KEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKAQRIVRLPSG 176
           KEGEANVAHS+RF          APSSSG+KKIQK+KGGKGK   +     G
Sbjct: 138 KEGEANVAHSRRF----------APSSSGSKKIQKRKGGKGKGPTVTAEDKG 173

[Close]
BLAST of PI0009146 vs. ExPASy TrEMBL
Match: A0A5A7VPE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001060 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 5.7e-46
Identity = 110/168 (65.48%), Postives = 128/168 (76.19%), Query Frame = 0 

Query: 4   FPCSKCIPDRQDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQP 63
           FP        +DAY+RWTKAN+KA +YILAS+SD+LSKKHE +VTA QIMDSL +MFGQP
Sbjct: 19  FPTQNASQSIRDAYNRWTKANDKAHLYILASISDILSKKHEIVVTAHQIMDSLNKMFGQP 78

Query: 64  SIQIRHEAIKYFYNARMKEGQSVREHVLDMMVQFNVVETNGAV------IDEQSQTFQSL 123
           SIQI+ EAIKY YNARMKEG+SVREHVL M+V FNV + NGA+      + ++ QTFQSL
Sbjct: 79  SIQIKQEAIKYLYNARMKEGESVREHVLIMIVNFNVAKMNGAIEYNMTTLLKELQTFQSL 138

Query: 124 MKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGK 166
              KGQKEGEANVA+SKRF           PSSSG+KKIQKKKGGKGK
Sbjct: 139 ---KGQKEGEANVANSKRF----------TPSSSGSKKIQKKKGGKGK 173

[Close]
BLAST of PI0009146 vs. ExPASy TrEMBL
Match: A0A5A7T706 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G00760 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.2e-45
Identity = 109/165 (66.06%), Postives = 129/165 (78.18%), Query Frame = 0 

Query: 14  QDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIK 73
           ++AY+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+K
Sbjct: 22  REAYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQTSYQIKHDALK 81

Query: 74  YFYNARMKEGQSVREHVLDMMVQFNVVETNGAVIDEQS-------------QTFQSLMKN 133
           Y YNARM EG SVREHVL+MM+ FNV E   AVIDE S             QTF+SLMK 
Sbjct: 82  YIYNARMNEGASVREHVLNMMIHFNVAEMKEAVIDEASQIAYTLTTLLNELQTFESLMKI 141

Query: 134 KGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG 165
           KGQK GEANVA S ++F +GS+SG K  PSSSG KK +KKKGG+G
Sbjct: 142 KGQK-GEANVATSTRKFHRGSNSGNKFMPSSSGNKKWKKKKGGQG 185

[Close]
BLAST of PI0009146 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-45
Identity = 114/197 (57.87%), Postives = 134/197 (68.02%), Query Frame = 0 

Query: 5   PCSKCIPDRQDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPS 64
           P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S
Sbjct: 47  PAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 106

Query: 65  IQIRHEAIKYFYNARMKEGQSVREHVLDMMVQFNVVETNGAVIDEQS------------- 124
            QI+H+A+KY YNARM EG SVREHVL+MMV FNV E NGAVIDE S             
Sbjct: 107 YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESF 166

Query: 125 -----------------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 165
                                  QTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 226

[Close]
BLAST of PI0009146 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-45
Identity = 114/197 (57.87%), Postives = 134/197 (68.02%), Query Frame = 0 

Query: 5   PCSKCIPDRQDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPS 64
           P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S
Sbjct: 47  PAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 106

Query: 65  IQIRHEAIKYFYNARMKEGQSVREHVLDMMVQFNVVETNGAVIDEQS------------- 124
            QI+H+A+KY YNARM EG SVREHVL+MMV FNV E NGAVIDE S             
Sbjct: 107 YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESF 166

Query: 125 -----------------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 165
                                  QTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 226

[Close]
BLAST of PI0009146 vs. NCBI nr
Match: KAA0042123.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK18066.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 6.3e-47
Identity = 111/172 (64.53%), Postives = 127/172 (73.84%), Query Frame = 0 

Query: 4   FPCSKCIPDRQDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQP 63
           FP        +DAYD WTKAN+KA +YILASMSD+LSKK E MVTARQIMDSL+E+FGQ 
Sbjct: 18  FPTQNASQSVKDAYDHWTKANDKACLYILASMSDILSKKLEIMVTARQIMDSLREIFGQS 77

Query: 64  SIQIRHEAIKYFYNARMKEGQSVREHVLDMMVQFNVVETNGAVIDEQSQTFQSLMKNKGQ 123
           SIQI+ EAIKY YN RMKE QS+REHVL+M+V FNVVE NGAV DE+SQ+       KGQ
Sbjct: 78  SIQIKQEAIKYVYNVRMKEDQSIREHVLNMIVNFNVVEMNGAVFDEKSQSL------KGQ 137

Query: 124 KEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGKAQRIVRLPSG 176
           KEGEANVAHS+RF          APSSSG+KKIQK+KGGKGK   +     G
Sbjct: 138 KEGEANVAHSRRF----------APSSSGSKKIQKRKGGKGKGPTVTAEDKG 173

[Close]
BLAST of PI0009146 vs. NCBI nr
Match: KAA0067441.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 1.2e-45
Identity = 110/168 (65.48%), Postives = 128/168 (76.19%), Query Frame = 0 

Query: 4   FPCSKCIPDRQDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQP 63
           FP        +DAY+RWTKAN+KA +YILAS+SD+LSKKHE +VTA QIMDSL +MFGQP
Sbjct: 19  FPTQNASQSIRDAYNRWTKANDKAHLYILASISDILSKKHEIVVTAHQIMDSLNKMFGQP 78

Query: 64  SIQIRHEAIKYFYNARMKEGQSVREHVLDMMVQFNVVETNGAV------IDEQSQTFQSL 123
           SIQI+ EAIKY YNARMKEG+SVREHVL M+V FNV + NGA+      + ++ QTFQSL
Sbjct: 79  SIQIKQEAIKYLYNARMKEGESVREHVLIMIVNFNVAKMNGAIEYNMTTLLKELQTFQSL 138

Query: 124 MKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKKGGKGK 166
              KGQKEGEANVA+SKRF           PSSSG+KKIQKKKGGKGK
Sbjct: 139 ---KGQKEGEANVANSKRF----------TPSSSGSKKIQKKKGGKGK 173

[Close]
BLAST of PI0009146 vs. NCBI nr
Match: KAA0037371.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 192.2 bits (487), Expect = 4.5e-45
Identity = 109/165 (66.06%), Postives = 129/165 (78.18%), Query Frame = 0 

Query: 14  QDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIK 73
           ++AY+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+K
Sbjct: 22  REAYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQTSYQIKHDALK 81

Query: 74  YFYNARMKEGQSVREHVLDMMVQFNVVETNGAVIDEQS-------------QTFQSLMKN 133
           Y YNARM EG SVREHVL+MM+ FNV E   AVIDE S             QTF+SLMK 
Sbjct: 82  YIYNARMNEGASVREHVLNMMIHFNVAEMKEAVIDEASQIAYTLTTLLNELQTFESLMKI 141

Query: 134 KGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKKGGKG 165
           KGQK GEANVA S ++F +GS+SG K  PSSSG KK +KKKGG+G
Sbjct: 142 KGQK-GEANVATSTRKFHRGSNSGNKFMPSSSGNKKWKKKKGGQG 185

[Close]
BLAST of PI0009146 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 5.9e-45
Identity = 114/197 (57.87%), Postives = 134/197 (68.02%), Query Frame = 0 

Query: 5   PCSKCIPDRQDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPS 64
           P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S
Sbjct: 47  PAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 106

Query: 65  IQIRHEAIKYFYNARMKEGQSVREHVLDMMVQFNVVETNGAVIDEQS------------- 124
            QI+H+A+KY YNARM EG SVREHVL+MMV FNV E NGAVIDE S             
Sbjct: 107 YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESF 166

Query: 125 -----------------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 165
                                  QTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 226

[Close]
BLAST of PI0009146 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 5.9e-45
Identity = 114/197 (57.87%), Postives = 134/197 (68.02%), Query Frame = 0 

Query: 5   PCSKCIPDRQDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPS 64
           P +      ++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IMDSLQEMFGQ S
Sbjct: 46  PAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 105

Query: 65  IQIRHEAIKYFYNARMKEGQSVREHVLDMMVQFNVVETNGAVIDEQS------------- 124
            QI+H+A+KY YNARM EG SVREHVL+MMV FNV E NGAVIDE S             
Sbjct: 106 YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESF 165

Query: 125 -----------------------QTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 165
                                  QTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 166 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 225

The following BLAST results are available for this feature:
BLAST of PI0009146 vs.
Match NameE-valueIdentityDescription
BLAST of PI0009146 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TFX63.0e-4764.53Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G0039... [more]
A0A5A7VPE85.7e-4665.48Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G00106... [more]
A0A5A7T7062.2e-4566.06Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G0076... [more]
A0A5A7SMH82.8e-4557.87Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... [more]
A0A5D3CPJ62.8e-4557.87Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... [more]
BLAST of PI0009146 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0042123.16.3e-4764.53gag/pol protein [Cucumis melo var. makuwa] >TYK18066.1 gag/pol protein [Cucumis ... [more]
KAA0067441.11.2e-4565.48gag/pol protein [Cucumis melo var. makuwa][more]
KAA0037371.14.5e-4566.06gag/pol protein [Cucumis melo var. makuwa][more]
KAA0044955.15.9e-4557.87gag/pol protein [Cucumis melo var. makuwa][more]
KAA0048404.15.9e-4557.87gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of PI0009146 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 20..114
e-value: 2.4E-12
score: 46.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..183
NoneNo IPR availablePANTHERPTHR35317OS04G0629600 PROTEINcoord: 12..113
NoneNo IPR availablePANTHERPTHR35317:SF8POLYPROTEIN-LIKE PROTEINcoord: 12..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0009146.1PI0009146.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0005488 binding