PI0009098 (gene) Melon (PI 482460) v1

Overview


Name	PI0009098
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr11: 27410137 .. 27412067 (-)
RNA-Seq Expression	PI0009098
Synteny	PI0009098

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGATCAAGTCATACATACCATAGTAACGGTACGTGTATTTGTAATGATGTTTAGTTTGGCATGTCTGTAAATGAGACGAAAGAACTAGTAACAAACGGATGGAAGTTTAGTATAGCATGAAGAATTGGTTGGTGACGCTGGAGATTGTATTAGTTCTTCAATCTGTAAACAGCCAGGATGAAATATTTTTTTGGTATCAAGCATATCCCTGATGACCTGTTTGTTTTGTTTTGTAGCGATTGTTTCGGAATGGTGTTATTGCGATCACAAGGATTGGCTCGAATTCTTTGCCTACTTACTGCTTCATGTAAGTTTATAATGGTCCACAGCTATGAGTTCCCTTGCTATATTTGGTTATTTTTATGTGAATTAAAAGTGACATAATTTACTGGTCTCCAGCTAGAAGATATGGTTGAGCTTTGGCTGGCCCATTTTATATGACTCATACTTCAATTTTCAAAATATTGATAATCATATTCCAACTGATATAATGATATTCTTTTCAACTTAAATATGATATAGAATCTTTGTTGTCCTAGATGCAAAGAATTGAGATGGCCCAACTGGGTTTTTTTGTCTGCTCTTACTTTTCTTTTGTCATAAAAGATACTTGATCAGGGGACCTCATTTTTGTTTCTAATCGATATGATATAGCATCGACAAAGTTATTGTCTTGGGATCTTTACCAGCAGCAATCCTTTTTTTCCATTTCTCTTTGTGATACTGTCTAAATACTTCGAATGTAATAAGAGCAATCAATTTATCTTGCTTAAGTACTGATTGGTGAAGATCCTCACCATCTACTTACAATGTCTTGCATGTCAACATAATGAGAGTGATTATTTGGGCATTTAGGAATAGAGTTTGCTAACTGCTGCCTTTTAGGATCCATGTAGCGACTCATTGCAAACATGTTCTAAGAATGCATCTTGCAACACAATTAGATAGATTAAACTGTCCAGGTTTTGGGAATAAAATAACACACTCTAAGAAATCATCTATGACACCCCTGCTTTATGCCCCAACTTAGGTAGAGAAGCTAAATGATATGGTGTTGTCTATTTTCTACTTGCACTGTCCAAACAAGTAATTTCGTTACATTTGGTTGGTAAAAAGATATGAAGGCTGGCAAATGAAACTTCAGCTGTTGGGATTGATGATGGTGTTTTACAGTTGTTAAGCCAAATGGATAGATTAAGGTTGCAGTTTGAAAAAGTGGGAAGACAGATGAATTGGCATTCTTGGAACGGTCAATACACGTAAGAGGTCGGTTAAAATCAATAGTTCCCTCCAAAAGTAATCTTGTTTTCAATAATTGAGTGGTTTTGCTCAGATGCATGGTTTCTATGTCGATAGTTTCACAAATATCTCTTGTGATCTTAAACCTCCATTATATGTTACACCTTTTGTCTCTAGACCATTTTGACTTTGCTGAAAACAGCTAGCAAATGAAAATTAATGCAGTAGCCCCAACATCATCAAGTTGCACGAGTCTTAGTCAATGCAATACTGGTTCCAACCTGGTGACCATAGATGATAAAACTTGAAACTGATCACTGCTTGATTATTACTTCCCTCACGCAGAATGGAATCAATTTGAGAATGATATGTGCACTTAGATACACCCTCTGTTGACGTTAAGAATCCTTATCAAGTATCGTCCTACTCGTACCCTTTTTCACATGAAAGTAATACCGGTATCGATTCCTCCTCTCTTGTGGGACTGTTCTGCTACACAATGGTCCTTATGAGCCATAGAAAGATTCAATCGTGTTTGATTGTTCCATGAGTAAATGTGAATATGCATTTTTTGTGTAGTTCCTAAAGGCTGATGGAAAGGATGCCAATTCAATCGTTAAGAAGAAATTATGGCTTTCATATTCACTGAAGCCTTGCAGGTTGGAAGAAACCGACAAGAATCTTGA

mRNA sequence

ATGTCAAGATCAAGTCATACATACCATAGTAACGCGATTGTTTCGGAATGGTGTTATTGCGATCACAAGGATTGGCTCGAATTCTTTGCCTACTTACTGCTTCATGTAAAAATTATGGCTTTCATATTCACTGAAGCCTTGCAGGTTGGAAGAAACCGACAAGAATCTTGA

Coding sequence (CDS)

ATGTCAAGATCAAGTCATACATACCATAGTAACGCGATTGTTTCGGAATGGTGTTATTGCGATCACAAGGATTGGCTCGAATTCTTTGCCTACTTACTGCTTCATGTAAAAATTATGGCTTTCATATTCACTGAAGCCTTGCAGGTTGGAAGAAACCGACAAGAATCTTGA

Protein sequence

MSRSSHTYHSNAIVSEWCYCDHKDWLEFFAYLLLHVKIMAFIFTEALQVGRNRQES

Homology

[Close]

BLAST of PI0009098 vs. ExPASy TrEMBL
Match: A0A0A0LIZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G247050 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 1  MSRSSHTYHSNAIVSEWCYCDHKDWLEFFAYLLLHVKIMAFIFTEALQVGRNRQES 57
          MSRSSHTY SN  VSE CYC+HKDWLEFFAYLLLH+     +F+ + ++ R   ES
Sbjct: 1  MSRSSHTYCSNVTVSECCYCNHKDWLEFFAYLLLHL-----LFSSSQRMNRRSNES 51

[Close]

BLAST of PI0009098 vs. NCBI nr
Match: KGN61838.2 (hypothetical protein Csa_006127 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 8.8e-04
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 14 VSEWCYCDHKDWLEFFAYLLLHVKIMAFIFTEALQVGRNRQES 57
          VSE CYC+HKDWLEFFAYLLLH+     +F+ + ++ R   ES
Sbjct: 3  VSECCYCNHKDWLEFFAYLLLHL-----LFSSSQRMNRRSNES 40

The following BLAST results are available for this feature:

BLAST of PI0009098 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009098 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIZ2	1.5e-09	60.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G247050 PE=4 SV=1	[more]

BLAST of PI0009098 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61838.2	8.8e-04	55.81	hypothetical protein Csa_006127 [Cucumis sativus]	[more]

BLAST of PI0009098 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009098.1	PI0009098.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006891	intra-Golgi vesicle-mediated transport
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component	GO:0030126	COPI vesicle coat