PI0009094 (gene) Melon (PI 482460) v1

Overview


Name	PI0009094
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr03: 17462646 .. 17462978 (-)
RNA-Seq Expression	PI0009094
Synteny	PI0009094

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCACGAGGAAGGCCAAGGCAAGGTAGGCAAGTGACAACTGGTGTTCGAGCTACTAGGAGCGCTAATAGAGCGCCAAAATCGGATCAAATGTCTAGTAATCCTCATACCACAACTGAACAAAACATGGAAGAAAGTATATTCAATCACTTTGCTCAGAGAGTAGCATATCACCTTATGCCTACAAACCCTACAGTAGATAAGAAGTTCAACATCGAAAGGTTGAAGGTGTTGGGAGCAATGACCTTCATAGGGACCACTGATCCAGCCGACGCGGAGAAGTGGTTGACCTTGATTGAGAAGTGTTTTTGGGATGATGGAGTGCCTTGA

mRNA sequence

ATGAAACCACGAGGAAGGCCAAGGCAAGGTAGGCAAGTGACAACTGGTGTTCGAGCTACTAGGAGCGCTAATAGAGCGCCAAAATCGGATCAAATGTCTAGTAATCCTCATACCACAACTGAACAAAACATGGAAGAAAGTATATTCAATCACTTTGCTCAGAGAGTAGCATATCACCTTATGCCTACAAACCCTACAGTAGATAAGAAGTTCAACATCGAAAGGTTGAAGGTGTTGGGAGCAATGACCTTCATAGGGACCACTGATCCAGCCGACGCGGAGAAGTGGTTGACCTTGATTGAGAAGTGTTTTTGGGATGATGGAGTGCCTTGA

Coding sequence (CDS)

ATGAAACCACGAGGAAGGCCAAGGCAAGGTAGGCAAGTGACAACTGGTGTTCGAGCTACTAGGAGCGCTAATAGAGCGCCAAAATCGGATCAAATGTCTAGTAATCCTCATACCACAACTGAACAAAACATGGAAGAAAGTATATTCAATCACTTTGCTCAGAGAGTAGCATATCACCTTATGCCTACAAACCCTACAGTAGATAAGAAGTTCAACATCGAAAGGTTGAAGGTGTTGGGAGCAATGACCTTCATAGGGACCACTGATCCAGCCGACGCGGAGAAGTGGTTGACCTTGATTGAGAAGTGTTTTTGGGATGATGGAGTGCCTTGA

Protein sequence

MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCFWDDGVP

Homology

[Close]

BLAST of PI0009094 vs. ExPASy TrEMBL
Match: A0A5A7TVM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00730 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-22
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 8   RQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTV 67
           R+GRQV   V  TR ANRA  S ++SSNPH +  QN+EES+F+ FAQR+  H MP   TV
Sbjct: 28  RRGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTV 87

Query: 68  DKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF 105
           DK+F IERLK LGAMTF G T+ ADA K L+L+EKCF
Sbjct: 88  DKRFGIERLKALGAMTFEGKTNLADANKCLSLVEKCF 124

[Close]

BLAST of PI0009094 vs. ExPASy TrEMBL
Match: A0A5D3BCS9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00160 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.0e-22
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHL 60
           M P+ R R+G QV TGV+ TR+ +R  +SD+MS N H    QN+ ES+F+ F +++  H 
Sbjct: 152 MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 211

Query: 61  MPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF 105
           MPT  T+ K+F IERLK L AMTF GTT+P DA+KWL+LIEKCF
Sbjct: 212 MPTPTTMCKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCF 255

[Close]

BLAST of PI0009094 vs. ExPASy TrEMBL
Match: A0A5A7UG91 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00210 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.9e-22
Identity = 56/104 (53.85%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHL 60
           M P+ R R+G QV TGV+ TR+ +R  +SD+MS N H    QN+ ES+F+ F +++  H 
Sbjct: 1   MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60

Query: 61  MPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF 105
           MPT  T+ K+F I+RLK L AMTF GTT+P DA+KWL+LIEKCF
Sbjct: 61  MPTPSTMYKRFGIKRLKALRAMTFEGTTNPVDAKKWLSLIEKCF 104

[Close]

BLAST of PI0009094 vs. ExPASy TrEMBL
Match: A0A5D3DVY7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold93G00280 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.8e-21
Identity = 53/93 (56.99%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 12  QVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKF 71
           QV   V++  SANRA   D+MSSNPH+T  QN+EES+FN FA+RVA HL+P    V+K+ 
Sbjct: 2   QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRL 61

Query: 72  NIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF 105
            IER+K LGA TF GT  P + +KWL+L EKCF
Sbjct: 62  TIERIKALGATTFEGTIGPTNVKKWLSLAEKCF 94

[Close]

BLAST of PI0009094 vs. ExPASy TrEMBL
Match: A0A5A7UFQ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1371G00020 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.7e-20
Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 12  QVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKF 71
           QV   V++  SANRA   D+MSSNPH+T  QN+EES+FN FAQRVA HL+P    V+K+ 
Sbjct: 2   QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRL 61

Query: 72  NIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF 105
            IER+K LGA  F GT  P + +KWL+L EKCF
Sbjct: 62  TIERIKALGATAFEGTIGPTNVKKWLSLAEKCF 94

[Close]

BLAST of PI0009094 vs. NCBI nr
Match: KAA0047014.1 (hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK04769.1 hypothetical protein E5676_scaffold68G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 2.2e-22
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 0


Query: 8   RQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTV 67
           R+GRQV   V  TR ANRA  S ++SSNPH +  QN+EES+F+ FAQR+  H MP   TV
Sbjct: 28  RRGRQVAISVPVTRKANRAQASGKISSNPHDSVRQNVEESMFDRFAQRLTDHFMPIPSTV 87

Query: 68  DKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF 105
           DK+F IERLK LGAMTF G T+ ADA K L+L+EKCF
Sbjct: 88  DKRFGIERLKALGAMTFEGKTNLADANKCLSLVEKCF 124

[Close]

BLAST of PI0009094 vs. NCBI nr
Match: TYJ97632.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 6.3e-22
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHL 60
           M P+ R R+G QV TGV+ TR+ +R  +SD+MS N H    QN+ ES+F+ F +++  H 
Sbjct: 152 MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 211

Query: 61  MPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF 105
           MPT  T+ K+F IERLK L AMTF GTT+P DA+KWL+LIEKCF
Sbjct: 212 MPTPTTMCKRFGIERLKALRAMTFEGTTNPVDAKKWLSLIEKCF 255

[Close]

BLAST of PI0009094 vs. NCBI nr
Match: KAA0053236.1 (uncharacterized protein E6C27_scaffold102G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-21
Identity = 56/104 (53.85%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MKPRGRPRQGRQVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHL 60
           M P+ R R+G QV TGV+ TR+ +R  +SD+MS N H    QN+ ES+F+ F +++  H 
Sbjct: 1   MAPQERSRRGSQVITGVQGTRTVDRVQESDEMSCNAHNLVGQNVLESMFDRFTKKLNDHF 60

Query: 61  MPTNPTVDKKFNIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF 105
           MPT  T+ K+F I+RLK L AMTF GTT+P DA+KWL+LIEKCF
Sbjct: 61  MPTPSTMYKRFGIKRLKALRAMTFEGTTNPVDAKKWLSLIEKCF 104

[Close]

BLAST of PI0009094 vs. NCBI nr
Match: TYK27664.1 (uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20
Identity = 53/93 (56.99%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 12  QVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKF 71
           QV   V++  SANRA   D+MSSNPH+T  QN+EES+FN FA+RVA HL+P    V+K+ 
Sbjct: 2   QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAERVADHLIPIKSNVEKRL 61

Query: 72  NIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF 105
            IER+K LGA TF GT  P + +KWL+L EKCF
Sbjct: 62  TIERIKALGATTFEGTIGPTNVKKWLSLAEKCF 94

[Close]

BLAST of PI0009094 vs. NCBI nr
Match: KAA0054080.1 (hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-20
Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 12  QVTTGVRATRSANRAPKSDQMSSNPHTTTEQNMEESIFNHFAQRVAYHLMPTNPTVDKKF 71
           QV   V++  SANRA   D+MSSNPH+T  QN+EES+FN FAQRVA HL+P    V+K+ 
Sbjct: 2   QVAMNVQSIGSANRAQGLDEMSSNPHSTIVQNVEESMFNRFAQRVADHLIPIKSNVEKRL 61

Query: 72  NIERLKVLGAMTFIGTTDPADAEKWLTLIEKCF 105
            IER+K LGA  F GT  P + +KWL+L EKCF
Sbjct: 62  TIERIKALGATAFEGTIGPTNVKKWLSLAEKCF 94

The following BLAST results are available for this feature:

BLAST of PI0009094 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TVM1	1.0e-22	60.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BCS9	3.0e-22	54.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G0016...	[more]
A0A5A7UG91	8.9e-22	53.85	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DVY7	9.8e-21	56.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UFQ1	1.7e-20	56.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0009094 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047014.1	2.2e-22	60.82	hypothetical protein E6C27_scaffold230G002160 [Cucumis melo var. makuwa] >TYK047...	[more]
TYJ97632.1	6.3e-22	54.81	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0053236.1	1.8e-21	53.85	uncharacterized protein E6C27_scaffold102G00210 [Cucumis melo var. makuwa]	[more]
TYK27664.1	2.0e-20	56.99	uncharacterized protein E5676_scaffold93G00280 [Cucumis melo var. makuwa]	[more]
KAA0054080.1	3.4e-20	56.99	hypothetical protein E6C27_scaffold1371G00020 [Cucumis melo var. makuwa]	[more]

BLAST of PI0009094 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009094.1	PI0009094.1	mRNA