Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACTTCACACCAAACCTCTTTAGATATGAGTGCAGTTTCTTCCTTTATCCCAACAAACAGCCAAAGAAACTATGGACTCAGCAGTTTCTGCACACCATCAAATTGTTTACCAATTTGCATTAGAATGCAACAAAGCCCTCAAGCAACAGCCATTAGCCCTCAAAATCTCGGCAAGACAATTCTTGGGCTTAGTTTTCAAGCAGTTTTAGCCTTGTTCATTAGCTCACCAACTTCCTCTCCTCCACTTTTGATACACCTTTTTGCTGCTGCTGTTTTGATTAGCTTTGCTGTTTCATTTGGTGCTCTTTTCCTGAATAACTCCTTCCCGAGAACCGCCCGTTTGTTTGAGAAGATTGGTGCGCTTTTCGCTGCAATTGGTGTGTGTATCATAGCAAGCTTTCTTCTAGTTCATCAGAACTTTGCTTGGATTTGTTGGGTGGCATGTGCCTTCTCCATCATTGTTTTTGCTCTATCATTTAAGTGA
mRNA sequence
ATGGCTTCAACTTCACACCAAACCTCTTTAGATATGAGTGCAGTTTCTTCCTTTATCCCAACAAACAGCCAAAGAAACTATGGACTCAGCAGTTTCTGCACACCATCAAATTGTTTACCAATTTGCATTAGAATGCAACAAAGCCCTCAAGCAACAGCCATTAGCCCTCAAAATCTCGGCAAGACAATTCTTGGGCTTAGTTTTCAAGCAGTTTTAGCCTTGTTCATTAGCTCACCAACTTCCTCTCCTCCACTTTTGATACACCTTTTTGCTGCTGCTGTTTTGATTAGCTTTGCTGTTTCATTTGGTGCTCTTTTCCTGAATAACTCCTTCCCGAGAACCGCCCGTTTGTTTGAGAAGATTGGTGCGCTTTTCGCTGCAATTGGTGTGTGTATCATAGCAAGCTTTCTTCTAGTTCATCAGAACTTTGCTTGGATTTGTTGGGTGGCATGTGCCTTCTCCATCATTGTTTTTGCTCTATCATTTAAGTGA
Coding sequence (CDS)
ATGGCTTCAACTTCACACCAAACCTCTTTAGATATGAGTGCAGTTTCTTCCTTTATCCCAACAAACAGCCAAAGAAACTATGGACTCAGCAGTTTCTGCACACCATCAAATTGTTTACCAATTTGCATTAGAATGCAACAAAGCCCTCAAGCAACAGCCATTAGCCCTCAAAATCTCGGCAAGACAATTCTTGGGCTTAGTTTTCAAGCAGTTTTAGCCTTGTTCATTAGCTCACCAACTTCCTCTCCTCCACTTTTGATACACCTTTTTGCTGCTGCTGTTTTGATTAGCTTTGCTGTTTCATTTGGTGCTCTTTTCCTGAATAACTCCTTCCCGAGAACCGCCCGTTTGTTTGAGAAGATTGGTGCGCTTTTCGCTGCAATTGGTGTGTGTATCATAGCAAGCTTTCTTCTAGTTCATCAGAACTTTGCTTGGATTTGTTGGGTGGCATGTGCCTTCTCCATCATTGTTTTTGCTCTATCATTTAAGTGA
Protein sequence
MASTSHQTSLDMSAVSSFIPTNSQRNYGLSSFCTPSNCLPICIRMQQSPQATAISPQNLGKTILGLSFQAVLALFISSPTSSPPLLIHLFAAAVLISFAVSFGALFLNNSFPRTARLFEKIGALFAAIGVCIIASFLLVHQNFAWICWVACAFSIIVFALSFK
Homology
BLAST of PI0009034 vs. ExPASy TrEMBL
Match:
A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)
HSP 1 Score: 255.0 bits (650), Expect = 2.1e-64
Identity = 139/164 (84.76%), Postives = 143/164 (87.20%), Query Frame = 0
Query: 1 MASTSHQTSLDMSAVSSFIPTNSQRNYGLSSFCTPSNCLPICIRMQQSPQATAISPQNLG 60
MASTSHQTSLDMSA SSFI T SQRNYGL CTPSNCLP+ IRMQQSPQATA S Q LG
Sbjct: 1 MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQKLG 60
Query: 61 KTILGLSFQAVLALFISS-PTSSPPLLIHLFAAAVLISFAVSFGALFLNNSFPRTARLFE 120
K IL LSFQAVLALFISS PTS PPLLIH FAAAV ISFAVSF ALFL+NSFPRTA LFE
Sbjct: 61 KIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFE 120
Query: 121 KIGALFAAIGVCIIASFLLVHQNFAWICWVACAFSIIVFALSFK 164
K+GALF+A GVC IASFLLVHQNFAWICWVAC FSIIVFALSFK
Sbjct: 121 KVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of PI0009034 vs. ExPASy TrEMBL
Match:
A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)
HSP 1 Score: 168.7 bits (426), Expect = 2.0e-38
Identity = 97/153 (63.40%), Postives = 116/153 (75.82%), Query Frame = 0
Query: 12 MSAVSSFIPTNSQRNYGLSSFCTPSNCLPICIRMQQ-SPQATAISPQNLGKTILGLSFQA 71
M+ + SFI ++RN + N LPICI MQ+ SP ++ + N+GKTILGL+FQA
Sbjct: 1 MNELYSFITAINERNPEI-------NSLPICITMQRPSPANSSKTENNVGKTILGLTFQA 60
Query: 72 VLALFISSPTSSPPLLIHLFAAAVLISFAVSFGALFLNNSFPRTARLFEKIGALFAAIGV 131
VLALFI+SP SSPPLL HLFAAAVLISFAVSF +FL N FPR A LFEKIGAL AAIGV
Sbjct: 61 VLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGV 120
Query: 132 CIIASFLLVHQNFAWICWVACAFSIIVFALSFK 164
CI+AS LL+HQNFAWI W+A FS++ F LSF+
Sbjct: 121 CIVAS-LLIHQNFAWISWLASGFSLMAFVLSFR 145
BLAST of PI0009034 vs. ExPASy TrEMBL
Match:
A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)
HSP 1 Score: 168.7 bits (426), Expect = 2.0e-38
Identity = 100/164 (60.98%), Postives = 122/164 (74.39%), Query Frame = 0
Query: 1 MASTSHQTSLDMSAVSSFIPTNSQRNYGLSSFCTPSNCLPICIRMQ-QSPQATAISPQNL 60
M S+S Q S+DM+ + S I + ++RN + N LPICI MQ SP ++ + N+
Sbjct: 1 MESSSQQISIDMNHLYSLITSINERNPEI-------NGLPICIIMQTASPANSSKTENNV 60
Query: 61 GKTILGLSFQAVLALFISSPTSSPPLLIHLFAAAVLISFAVSFGALFLNNSFPRTARLFE 120
G TILGL+FQAVLALFI+S TSSPPLL HLF AAVLISFAVSF +FL + FPR A LFE
Sbjct: 61 GTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFE 120
Query: 121 KIGALFAAIGVCIIASFLLVHQNFAWICWVACAFSIIVFALSFK 164
KIGAL AAIGVCI+AS LL+HQNFAWI W+AC FS++ F LSF+
Sbjct: 121 KIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156
BLAST of PI0009034 vs. ExPASy TrEMBL
Match:
A0A6J1CY58 (uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015658 PE=4 SV=1)
HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 81/126 (64.29%), Postives = 94/126 (74.60%), Query Frame = 0
Query: 1 MASTSHQTSLDMSAVSSFIPTNSQRNYGLSSF------CTPSNCLPICIRMQQSPQATAI 60
MAST QTS+DM+A+SSFI ++RN G+SSF TPS+CLPICIRMQ+ P A
Sbjct: 1 MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPPPAK-- 60
Query: 61 SPQNLGKTILGLSFQAVLALFISSPTSSPPLLIHLFAAAVLISFAVSFGALFLNNSFPRT 120
S Q+LGKTILGL+FQAVLALFIS P+S P L LF AAVLISFAVSF LFL ++PR
Sbjct: 61 SSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPRM 120
BLAST of PI0009034 vs. ExPASy TrEMBL
Match:
A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)
HSP 1 Score: 122.5 bits (306), Expect = 1.7e-24
Identity = 82/169 (48.52%), Postives = 108/169 (63.91%), Query Frame = 0
Query: 1 MAST-SHQTSLDMSAVSSFIPTNSQRNYGLSSFCT----PSNCLPICIRMQQSPQATAIS 60
MA T H+ SLDM+ ++S I + RN G+SS CT S+CLPI I+MQ+ S
Sbjct: 1 MAETPPHEISLDMNKLNSLIFAVTNRNPGISS-CTWGGAASDCLPIYIKMQRPSPVN--S 60
Query: 61 PQNLGKTILGLSFQAVLALFIS-SPTSSPPLLIHLFAAAVLISFAVSFGALFLNNSFPRT 120
PQ G T L L+FQA++ LF+S +P+SS PL LFAA +L SF S+ + L FP+T
Sbjct: 61 PQ-FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKT 120
Query: 121 ARLFEKIGALFAAIGVCIIASFLLVHQNFAWICWVACAFSIIVFALSFK 164
A+L + GALFAAIG CII S LL++ NF WICW+A + F +SFK
Sbjct: 121 AQLLQTFGALFAAIGTCIIGS-LLLYPNFTWICWLAAGLILPAFIISFK 164
BLAST of PI0009034 vs. NCBI nr
Match:
KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])
HSP 1 Score: 255.0 bits (650), Expect = 4.4e-64
Identity = 139/164 (84.76%), Postives = 143/164 (87.20%), Query Frame = 0
Query: 1 MASTSHQTSLDMSAVSSFIPTNSQRNYGLSSFCTPSNCLPICIRMQQSPQATAISPQNLG 60
MASTSHQTSLDMSA SSFI T SQRNYGL CTPSNCLP+ IRMQQSPQATA S Q LG
Sbjct: 1 MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSSQKLG 60
Query: 61 KTILGLSFQAVLALFISS-PTSSPPLLIHLFAAAVLISFAVSFGALFLNNSFPRTARLFE 120
K IL LSFQAVLALFISS PTS PPLLIH FAAAV ISFAVSF ALFL+NSFPRTA LFE
Sbjct: 61 KIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFE 120
Query: 121 KIGALFAAIGVCIIASFLLVHQNFAWICWVACAFSIIVFALSFK 164
K+GALF+A GVC IASFLLVHQNFAWICWVAC FSIIVFALSFK
Sbjct: 121 KVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164
BLAST of PI0009034 vs. NCBI nr
Match:
KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])
HSP 1 Score: 168.7 bits (426), Expect = 4.2e-38
Identity = 97/153 (63.40%), Postives = 116/153 (75.82%), Query Frame = 0
Query: 12 MSAVSSFIPTNSQRNYGLSSFCTPSNCLPICIRMQQ-SPQATAISPQNLGKTILGLSFQA 71
M+ + SFI ++RN + N LPICI MQ+ SP ++ + N+GKTILGL+FQA
Sbjct: 1 MNELYSFITAINERNPEI-------NSLPICITMQRPSPANSSKTENNVGKTILGLTFQA 60
Query: 72 VLALFISSPTSSPPLLIHLFAAAVLISFAVSFGALFLNNSFPRTARLFEKIGALFAAIGV 131
VLALFI+SP SSPPLL HLFAAAVLISFAVSF +FL N FPR A LFEKIGAL AAIGV
Sbjct: 61 VLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGV 120
Query: 132 CIIASFLLVHQNFAWICWVACAFSIIVFALSFK 164
CI+AS LL+HQNFAWI W+A FS++ F LSF+
Sbjct: 121 CIVAS-LLIHQNFAWISWLASGFSLMAFVLSFR 145
BLAST of PI0009034 vs. NCBI nr
Match:
KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])
HSP 1 Score: 168.7 bits (426), Expect = 4.2e-38
Identity = 100/164 (60.98%), Postives = 122/164 (74.39%), Query Frame = 0
Query: 1 MASTSHQTSLDMSAVSSFIPTNSQRNYGLSSFCTPSNCLPICIRMQ-QSPQATAISPQNL 60
M S+S Q S+DM+ + S I + ++RN + N LPICI MQ SP ++ + N+
Sbjct: 1 MESSSQQISIDMNHLYSLITSINERNPEI-------NGLPICIIMQTASPANSSKTENNV 60
Query: 61 GKTILGLSFQAVLALFISSPTSSPPLLIHLFAAAVLISFAVSFGALFLNNSFPRTARLFE 120
G TILGL+FQAVLALFI+S TSSPPLL HLF AAVLISFAVSF +FL + FPR A LFE
Sbjct: 61 GTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFE 120
Query: 121 KIGALFAAIGVCIIASFLLVHQNFAWICWVACAFSIIVFALSFK 164
KIGAL AAIGVCI+AS LL+HQNFAWI W+AC FS++ F LSF+
Sbjct: 121 KIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156
BLAST of PI0009034 vs. NCBI nr
Match:
KAG6579132.1 (hypothetical protein SDJN03_23580, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 144.8 bits (364), Expect = 6.4e-31
Identity = 79/132 (59.85%), Postives = 100/132 (75.76%), Query Frame = 0
Query: 31 SFCTPSNCLPICIRMQQSPQATAISPQNLGKTILGLSFQAVLALFISSPTSSPPLLIHLF 90
SF TP +CLPI +Q + N+GK I+GL+ QA+LA+FISSP+SSPPLL LF
Sbjct: 2 SFSTPRDCLPIWRAREQRLEPDK-GHSNVGKAIIGLTSQALLAMFISSPSSSPPLLRVLF 61
Query: 91 AAAVLISFAVSFGALFLNNSFPRTARLFEKIGALFAAIGVCIIASFLLVHQNFAWICWVA 150
A + ISF +SF +FL N+FP+ ARLFEK+GALFAAIGV IIASFLL+H+N+AWI +A
Sbjct: 62 GATMFISFLLSFAGIFLRNAFPKAARLFEKLGALFAAIGVSIIASFLLMHENYAWISGLA 121
Query: 151 CAFSIIVFALSF 163
C FS+IVF LS+
Sbjct: 122 CVFSLIVFGLSY 132
BLAST of PI0009034 vs. NCBI nr
Match:
KAG6579136.1 (hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 136.3 bits (342), Expect = 2.3e-28
Identity = 84/163 (51.53%), Postives = 103/163 (63.19%), Query Frame = 0
Query: 1 MASTSHQTSLDMSAVSSFIPTNSQRNYGLSSFCTPSNCLPICIRMQQSPQATAISPQNLG 60
M ST S+DM+ SS G S + + PQA NLG
Sbjct: 1 MGSTPQHVSIDMNQFSSI--------QGASD------------GLHREPQAR----NNLG 60
Query: 61 KTILGLSFQAVLALFISSPTSSPPLLIHLFAAAVLISFAVSFGALFLNNSFPRTARLFEK 120
K + GL+FQAVLALFIS+PTS PPLLI+LFAAA+LIS A+S ALFL +FPR A F K
Sbjct: 61 KIVFGLTFQAVLALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPRIALSFGK 120
Query: 121 IGALFAAIGVCIIASFLLVHQNFAWICWVACAFSIIVFALSFK 164
IGA+ AA+G CI+AS LL HQNF+WI W+AC F+++ F LSFK
Sbjct: 121 IGAMLAAVGACIMASLLLKHQNFSWIPWLACGFALMAFILSFK 139
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KJP2 | 2.1e-64 | 84.76 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1 | [more] |
| A0A5A7U7U1 | 2.0e-38 | 63.40 | Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A0A0KJN8 | 2.0e-38 | 60.98 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1 | [more] |
| A0A6J1CY58 | 1.1e-28 | 64.29 | uncharacterized protein LOC111015658 OS=Momordica charantia OX=3673 GN=LOC111015... | [more] |
| A0A0A0KQ03 | 1.7e-24 | 48.52 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN49808.1 | 4.4e-64 | 84.76 | hypothetical protein Csa_004650 [Cucumis sativus] | [more] |
| KAA0050246.1 | 4.2e-38 | 63.40 | putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... | [more] |
| KGN49803.1 | 4.2e-38 | 60.98 | hypothetical protein Csa_004681 [Cucumis sativus] | [more] |
| KAG6579132.1 | 6.4e-31 | 59.85 | hypothetical protein SDJN03_23580, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG6579136.1 | 2.3e-28 | 51.53 | hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
