PI0008874 (gene) Melon (PI 482460) v1

Overview


Name	PI0008874
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr04: 27445452 .. 27445631 (+)
RNA-Seq Expression	PI0008874
Synteny	PI0008874

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACCCGAGGACATAGTGGGATCACGATCTGAACAGTCGAGTGAGTGTAGGACGGGTTCGAGCGGATCGAAAAGGAAGCGGGGAGGCTATAACGTGGAAACTGTGGAAGTCATTCGCAGCACCATGGAATATGCGAATGACCAGCTCAAGGCAATTGCAGAATGGCTGAAAGAATAA

mRNA sequence

ATGTCACCCGAGGACATAGTGGGATCACGATCTGAACAGTCGAGTGAGTGTAGGACGGGTTCGAGCGGATCGAAAAGGAAGCGGGGAGGCTATAACGTGGAAACTGTGGAAGTCATTCGCAGCACCATGGAATATGCGAATGACCAGCTCAAGGCAATTGCAGAATGGCTGAAAGAATAA

Coding sequence (CDS)

ATGTCACCCGAGGACATAGTGGGATCACGATCTGAACAGTCGAGTGAGTGTAGGACGGGTTCGAGCGGATCGAAAAGGAAGCGGGGAGGCTATAACGTGGAAACTGTGGAAGTCATTCGCAGCACCATGGAATATGCGAATGACCAGCTCAAGGCAATTGCAGAATGGCTGAAAGAATAA

Protein sequence

MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE

Homology

[Close]

BLAST of PI0008874 vs. ExPASy TrEMBL
Match: A0A5A7V3C0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001020 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.5e-12
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEW 57
           M P+DI+G+R  +SSE RTGSSGSKRK+GG  VE+VE+IRS MEY N QLKAIAEW
Sbjct: 48  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEW 103

[Close]

BLAST of PI0008874 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 36/57 (63.16%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWL 58
          M  +DI+G+R ++S+E RTGSSGSKRK+GG  VET+E+IR+ ME++ND+LKAI EWL
Sbjct: 42 MLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWL 98

[Close]

BLAST of PI0008874 vs. ExPASy TrEMBL
Match: A0A5A7T0R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002830 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.4e-10
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1   MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE 60
           MSP++I G R+ Q+SE +  SSGSKRKRG  + ETVE++RS +E+ NDQLKAIA WLKE
Sbjct: 116 MSPDEIFGIRAGQASERKKCSSGSKRKRGSEHSETVEMMRSALEFGNDQLKAIANWLKE 174

[Close]

BLAST of PI0008874 vs. ExPASy TrEMBL
Match: A0A5A7V8A4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold556G00090 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.7e-09
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE 60
          MSP+++ G R+ Q+SE +  SSGSKRK+G  + ETVEVIRS +E+ NDQLKAIA W KE
Sbjct: 26 MSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKE 84

[Close]

BLAST of PI0008874 vs. ExPASy TrEMBL
Match: A0A5D3BQB5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00500 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.5e-09
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1   MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLK 52
           MSP+DI G+R   SS+ R  S GSKRKRGG+  ETVE+IR+TMEYANDQLK
Sbjct: 121 MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 171

[Close]

BLAST of PI0008874 vs. NCBI nr
Match: KAA0060365.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 9.2e-12
Identity = 40/56 (71.43%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 1   MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEW 57
           M P+DI+G+R  +SSE RTGSSGSKRK+GG  VE+VE+IRS MEY N QLKAIAEW
Sbjct: 48  MLPDDIMGTRPSRSSEDRTGSSGSKRKQGGQMVESVEIIRSAMEYVNGQLKAIAEW 103

[Close]

BLAST of PI0008874 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 36/57 (63.16%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 1  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWL 58
          M  +DI+G+R ++S+E RTGSSGSKRK+GG  VET+E+IR+ ME++ND+LKAI EWL
Sbjct: 42 MLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWL 98

[Close]

BLAST of PI0008874 vs. NCBI nr
Match: KAA0035181.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 1   MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE 60
           MSP++I G R+ Q+SE +  SSGSKRKRG  + ETVE++RS +E+ NDQLKAIA WLKE
Sbjct: 116 MSPDEIFGIRAGQASERKKCSSGSKRKRGSEHSETVEMMRSALEFGNDQLKAIANWLKE 174

[Close]

BLAST of PI0008874 vs. NCBI nr
Match: KAA0063227.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK13477.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 5.6e-09
Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1  MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLKAIAEWLKE 60
          MSP+++ G R+ Q+SE +  SSGSKRK+G  + ETVEVIRS +E+ NDQLKAIA W KE
Sbjct: 26 MSPDEMFGIRAAQASERKNCSSGSKRKQGSEHYETVEVIRSVIEFGNDQLKAIANWPKE 84

[Close]

BLAST of PI0008874 vs. NCBI nr
Match: TYK01364.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 7.3e-09
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 0


Query: 1   MSPEDIVGSRSEQSSECRTGSSGSKRKRGGYNVETVEVIRSTMEYANDQLK 52
           MSP+DI G+R   SS+ R  S GSKRKRGG+  ETVE+IR+TMEYANDQLK
Sbjct: 121 MSPDDITGTRPGHSSKGRLSSRGSKRKRGGHTTETVEIIRTTMEYANDQLK 171

The following BLAST results are available for this feature:

BLAST of PI0008874 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008874 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3C0	4.5e-12	71.43	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V469	1.1e-10	63.16	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T0R2	5.4e-10	62.71	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V8A4	2.7e-09	61.02	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BQB5	3.5e-09	68.63	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0008874 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060365.1	9.2e-12	71.43	retrotransposon protein [Cucumis melo var. makuwa] >TYK22108.1 retrotransposon p...	[more]
KAA0060529.1	2.3e-10	63.16	retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p...	[more]
KAA0035181.1	1.1e-09	62.71	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063227.1	5.6e-09	61.02	retrotransposon protein [Cucumis melo var. makuwa] >TYK13477.1 retrotransposon p...	[more]
TYK01364.1	7.3e-09	68.63	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0008874 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008874.1	PI0008874.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane