PI0008865 (gene) Melon (PI 482460) v1

Overview


Name	PI0008865
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ribonuclease H
Location	chr08: 4924332 .. 4924833 (-)
RNA-Seq Expression	PI0008865
Synteny	PI0008865

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAAGGAGGGGCGAAAAGGATTGAAAAAGAGAGCATAGAAGCATGCCTTCCAGAAAAACGAACGACGGAGGGATTCGATCCAAAAGCATATAAGTTGACGGCAAATGCGGGTTATGACTTTACAACCCGTACTGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGTTTTCTCTTACGCAAAGGAAGCTTCAAAAGCAAGGATATTTTATACCAAATTCAAGACTAGGAGTTGGGTATAAGTCTTCCGAGCCGGTTCGAATAACTGGTAAAGGAAAAGCAAAAGCTGCTGACACATGCCACATTACTGTTGAAGAATACAACGATTCTAAAGAAGACGAAAAAAATGAAAGTCAAAGAAGTTCTGTTTTTTATCGCATCACCTCCTCTACTGCACGCTCTTCAGTTTTCCAGAGGTTAAGTGTACCGACAAGGGAGGACAAAAATGAAGGGTCAACTTCTGAGTCCACCCGACTTTCTGCCTTTCAGAGATTAA

mRNA sequence

ATGGATAAAGGAGGGGCGAAAAGGATTGAAAAAGAGAGCATAGAAGCATGCCTTCCAGAAAAACGAACGACGGAGGGATTCGATCCAAAAGCATATAAGTTGACGGCAAATGCGGGTTATGACTTTACAACCCGTACTGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGTTTTCTCTTACGCAAAGGAAGCTTCAAAAGCAAGGATATTTTATACCAAATTCAAGACTAGGAGTTGGGTATAAGTCTTCCGAGCCGGTTCGAATAACTGGTAAAGGAAAAGCAAAAGCTGCTGACACATGCCACATTACTGTTGAAGAATACAACGATTCTAAAGAAGACGAAAAAAATGAAAGTCAAAGAAGTTCTGTTTTTTATCGCATCACCTCCTCTACTGCACGCTCTTCAGTTTTCCAGAGGTTAAGTGTACCGACAAGGGAGGACAAAAATGAAGGAGATTAA

Coding sequence (CDS)

ATGGATAAAGGAGGGGCGAAAAGGATTGAAAAAGAGAGCATAGAAGCATGCCTTCCAGAAAAACGAACGACGGAGGGATTCGATCCAAAAGCATATAAGTTGACGGCAAATGCGGGTTATGACTTTACAACCCGTACTGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGTTTTCTCTTACGCAAAGGAAGCTTCAAAAGCAAGGATATTTTATACCAAATTCAAGACTAGGAGTTGGGTATAAGTCTTCCGAGCCGGTTCGAATAACTGGTAAAGGAAAAGCAAAAGCTGCTGACACATGCCACATTACTGTTGAAGAATACAACGATTCTAAAGAAGACGAAAAAAATGAAAGTCAAAGAAGTTCTGTTTTTTATCGCATCACCTCCTCTACTGCACGCTCTTCAGTTTTCCAGAGGTTAAGTGTACCGACAAGGGAGGACAAAAATGAAGGAGATTAA

Protein sequence

MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKSKIFDERHGFSLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAADTCHITVEEYNDSKEDEKNESQRSSVFYRITSSTARSSVFQRLSVPTREDKNEGD

Homology

[Close]

BLAST of PI0008865 vs. ExPASy TrEMBL
Match: A0A5A7V4F2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004870 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.6e-48
Identity = 106/153 (69.28%), Postives = 122/153 (79.74%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGF 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFDER   
Sbjct: 348 IEKGEAKKIEKKELEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 407

Query: 61  SLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAADTCHITVEEYNDSKEDEKNE 120
           S TQ+KLQKQGY IPNSR G+GY+SSEP+RITGKGKAK  +TCHITVEE  DSKE +K+ 
Sbjct: 408 SPTQKKLQKQGYSIPNSRAGIGYQSSEPIRITGKGKAKVTNTCHITVEESKDSKEGKKDR 467

Query: 121 SQRSSVFYRITSSTARSSVFQRLSVPTREDKNE 153
           SQRSSVF RI  S  R SVFQR+S    +D N+
Sbjct: 468 SQRSSVFDRIAFSAIRPSVFQRVSTSIAKDSNQ 500

[Close]

BLAST of PI0008865 vs. ExPASy TrEMBL
Match: A0A5D3BTY1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.6e-48
Identity = 106/153 (69.28%), Postives = 122/153 (79.74%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGF 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFDER   
Sbjct: 348 IEKGEAKKIEKKELEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 407

Query: 61  SLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAADTCHITVEEYNDSKEDEKNE 120
           S TQ+KLQKQGY IPNSR G+GY+SSEP+RITGKGKAK  +TCHITVEE  DSKE +K+ 
Sbjct: 408 SPTQKKLQKQGYSIPNSRAGIGYQSSEPIRITGKGKAKVTNTCHITVEESKDSKEGKKDR 467

Query: 121 SQRSSVFYRITSSTARSSVFQRLSVPTREDKNE 153
           SQRSSVF RI  S  R SVFQR+S    +D N+
Sbjct: 468 SQRSSVFDRIAFSAIRPSVFQRVSTSIAKDSNQ 500

[Close]

BLAST of PI0008865 vs. ExPASy TrEMBL
Match: A0A5A7UFR3 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G002040 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.0e-48
Identity = 107/153 (69.93%), Postives = 123/153 (80.39%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGF 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KI DER  F
Sbjct: 302 IEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKILDERSEF 361

Query: 61  SLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAADTCHITVEEYNDSKEDEKNE 120
           S TQ+KLQKQGY IPNSR G+GY+SSEPVRITGKGKAK A+TCHITVEE  DS+E +K+ 
Sbjct: 362 SPTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKKDR 421

Query: 121 SQRSSVFYRITSSTARSSVFQRLSVPTREDKNE 153
           SQRSSVF RI  S  R SVFQR+S    +D N+
Sbjct: 422 SQRSSVFDRIAFSAIRPSVFQRVSTWITKDSNQ 454

[Close]

BLAST of PI0008865 vs. ExPASy TrEMBL
Match: A0A5A7TRQ6 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00560 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.9e-48
Identity = 107/151 (70.86%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGF 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFD+R   
Sbjct: 503 IEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDKRPEL 562

Query: 61  SLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAADTCHITVEEYNDSKEDEKNE 120
           S TQ+KLQKQGY IPNSR  +GY+SSEPVRITGKGKAK A+TCHITVEE  DSKE +K+ 
Sbjct: 563 SPTQKKLQKQGYSIPNSRARIGYQSSEPVRITGKGKAKVANTCHITVEESKDSKEGKKDR 622

Query: 121 SQRSSVFYRITSSTARSSVFQRLSVPTREDK 151
           SQRSSVF RI  ST R SVFQR+S    +DK
Sbjct: 623 SQRSSVFDRIDFSTIRPSVFQRVSTSIAKDK 653

[Close]

BLAST of PI0008865 vs. ExPASy TrEMBL
Match: A0A5D3D5V8 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00310 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.9e-48
Identity = 107/151 (70.86%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGF 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFD+R   
Sbjct: 556 IEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDKRPEL 615

Query: 61  SLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAADTCHITVEEYNDSKEDEKNE 120
           S TQ+KLQKQGY IPNSR  +GY+SSEPVRITGKGKAK A+TCHITVEE  DSKE +K+ 
Sbjct: 616 SPTQKKLQKQGYSIPNSRARIGYQSSEPVRITGKGKAKVANTCHITVEESKDSKEGKKDR 675

Query: 121 SQRSSVFYRITSSTARSSVFQRLSVPTREDK 151
           SQRSSVF RI  ST R SVFQR+S    +DK
Sbjct: 676 SQRSSVFDRIDFSTIRPSVFQRVSTSIAKDK 706

[Close]

BLAST of PI0008865 vs. NCBI nr
Match: TYK02262.1 (uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-48
Identity = 106/153 (69.28%), Postives = 122/153 (79.74%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGF 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFDER   
Sbjct: 348 IEKGEAKKIEKKELEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 407

Query: 61  SLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAADTCHITVEEYNDSKEDEKNE 120
           S TQ+KLQKQGY IPNSR G+GY+SSEP+RITGKGKAK  +TCHITVEE  DSKE +K+ 
Sbjct: 408 SPTQKKLQKQGYSIPNSRAGIGYQSSEPIRITGKGKAKVTNTCHITVEESKDSKEGKKDR 467

Query: 121 SQRSSVFYRITSSTARSSVFQRLSVPTREDKNE 153
           SQRSSVF RI  S  R SVFQR+S    +D N+
Sbjct: 468 SQRSSVFDRIAFSAIRPSVFQRVSTSIAKDSNQ 500

[Close]

BLAST of PI0008865 vs. NCBI nr
Match: KAA0060609.1 (uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa])

HSP 1 Score: 202.2 bits (513), Expect = 3.2e-48
Identity = 106/153 (69.28%), Postives = 122/153 (79.74%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGF 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFDER   
Sbjct: 348 IEKGEAKKIEKKELEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDERPEL 407

Query: 61  SLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAADTCHITVEEYNDSKEDEKNE 120
           S TQ+KLQKQGY IPNSR G+GY+SSEP+RITGKGKAK  +TCHITVEE  DSKE +K+ 
Sbjct: 408 SPTQKKLQKQGYSIPNSRAGIGYQSSEPIRITGKGKAKVTNTCHITVEESKDSKEGKKDR 467

Query: 121 SQRSSVFYRITSSTARSSVFQRLSVPTREDKNE 153
           SQRSSVF RI  S  R SVFQR+S    +D N+
Sbjct: 468 SQRSSVFDRIAFSAIRPSVFQRVSTSIAKDSNQ 500

[Close]

BLAST of PI0008865 vs. NCBI nr
Match: KAA0052361.1 (uncharacterized protein E6C27_scaffold207G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 4.2e-48
Identity = 107/153 (69.93%), Postives = 123/153 (80.39%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGF 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KI DER  F
Sbjct: 302 IEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKILDERSEF 361

Query: 61  SLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAADTCHITVEEYNDSKEDEKNE 120
           S TQ+KLQKQGY IPNSR G+GY+SSEPVRITGKGKAK A+TCHITVEE  DS+E +K+ 
Sbjct: 362 SPTQKKLQKQGYSIPNSRAGIGYQSSEPVRITGKGKAKVANTCHITVEESKDSEEGKKDR 421

Query: 121 SQRSSVFYRITSSTARSSVFQRLSVPTREDKNE 153
           SQRSSVF RI  S  R SVFQR+S    +D N+
Sbjct: 422 SQRSSVFDRIAFSAIRPSVFQRVSTWITKDSNQ 454

[Close]

BLAST of PI0008865 vs. NCBI nr
Match: KAA0046253.1 (uncharacterized protein E6C27_scaffold284G00560 [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 107/151 (70.86%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGF 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFD+R   
Sbjct: 503 IEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDKRPEL 562

Query: 61  SLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAADTCHITVEEYNDSKEDEKNE 120
           S TQ+KLQKQGY IPNSR  +GY+SSEPVRITGKGKAK A+TCHITVEE  DSKE +K+ 
Sbjct: 563 SPTQKKLQKQGYSIPNSRARIGYQSSEPVRITGKGKAKVANTCHITVEESKDSKEGKKDR 622

Query: 121 SQRSSVFYRITSSTARSSVFQRLSVPTREDK 151
           SQRSSVF RI  ST R SVFQR+S    +DK
Sbjct: 623 SQRSSVFDRIDFSTIRPSVFQRVSTSIAKDK 653

[Close]

BLAST of PI0008865 vs. NCBI nr
Match: TYK18947.1 (uncharacterized protein E5676_scaffold418G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 107/151 (70.86%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 1   MDKGGAKRIEKESIEACLPEKRTTEGFDPKAYKLTANAGYDFTTRTEFKS-KIFDERHGF 60
           ++KG AK+IEK+ +EA LPE+RT EGFDPKAYKL A AGYDFTTRTE KS KIFD+R   
Sbjct: 556 IEKGEAKKIEKKDLEAYLPERRTVEGFDPKAYKLMAKAGYDFTTRTELKSVKIFDKRPEL 615

Query: 61  SLTQRKLQKQGYFIPNSRLGVGYKSSEPVRITGKGKAKAADTCHITVEEYNDSKEDEKNE 120
           S TQ+KLQKQGY IPNSR  +GY+SSEPVRITGKGKAK A+TCHITVEE  DSKE +K+ 
Sbjct: 616 SPTQKKLQKQGYSIPNSRARIGYQSSEPVRITGKGKAKVANTCHITVEESKDSKEGKKDR 675

Query: 121 SQRSSVFYRITSSTARSSVFQRLSVPTREDK 151
           SQRSSVF RI  ST R SVFQR+S    +DK
Sbjct: 676 SQRSSVFDRIDFSTIRPSVFQRVSTSIAKDK 706

The following BLAST results are available for this feature:

BLAST of PI0008865 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008865 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4F2	1.6e-48	69.28	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3BTY1	1.6e-48	69.28	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 ...	[more]
A0A5A7UFR3	2.0e-48	69.93	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TRQ6	5.9e-48	70.86	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D5V8	5.9e-48	70.86	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of PI0008865 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02262.1	3.2e-48	69.28	uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]	[more]
KAA0060609.1	3.2e-48	69.28	uncharacterized protein E6C27_scaffold22G004870 [Cucumis melo var. makuwa]	[more]
KAA0052361.1	4.2e-48	69.93	uncharacterized protein E6C27_scaffold207G002040 [Cucumis melo var. makuwa]	[more]
KAA0046253.1	1.2e-47	70.86	uncharacterized protein E6C27_scaffold284G00560 [Cucumis melo var. makuwa]	[more]
TYK18947.1	1.2e-47	70.86	uncharacterized protein E5676_scaffold418G00310 [Cucumis melo var. makuwa]	[more]

BLAST of PI0008865 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008865.1	PI0008865.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006508	proteolysis
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity