PI0008842 (gene) Melon (PI 482460) v1

Overview


Name	PI0008842
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Exonuclease DPD1
Location	chr02: 531890 .. 534244 (-)
RNA-Seq Expression	PI0008842
Synteny	PI0008842

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGCTGTTTTTTCTTCCGACCTCCATGTCTCCCAAAAGCACCTCTCCATCTTCTTCCACGCCATTTACTCCACTTCTTTTTCTCCTTTAGCTTACGTTATTCCTTTGGTTTTCAATGCACCATAATCCTCCCTCAGATTTCCATTCAGGCAAGTTCTTTTTCTCTCTCTCGCTTTGTAATTTCACTGTTTCTGCATTCAAAAATTGCTATAAATTGCCGAAAAGTGGGAAGATGTTGTATTCTTTGGAAATCTGAATGTTAATAGTTTGAAGTTGCTTGATAATTAAATGGGTCGATTGCTGTTTCTGCTATAACCCCTTTTTTTCAATCTGATGCAGCAGTGCTTCGTTTGGACGTTTTTAAGTGCGACCGATCAATTGGTTTGCGTTGTTTGATTTTTTGTTTCTTTGATTTTTAGTAATGAATTATTGGATTTCTCTTTGTGGGGTATTGGCGAAAGATTGGAGATGGGGGGAGTTGGGGGTGTTCTTCGCCAAATTGATTTGATTACAATGTATTTGTTAAAATGTCTGAATGAGATCGTTGAAAATAAATTCTATTTTTTCTATTTTTTCTATTTTTTCTTTTTTTTTGACGTAATTGTGCTTGTCCTTTTGAGATCCATCATATCTTAACTTTTTTGTTTTGTTTATTATTTTCGTTATTCTGTTTGATAATCAATGTGGAGAATTTTAAGTTGATTCCTTTTTTGTTTCTTGATCTCTGATATGGGCTTATACATTGTTTGTCACACCCATTGTCTACAGGTTGAAGACAATTGATTCTGATGCTGGATTTTGTTGGGTTTTCTGTCTAGATTTCCTCTTGTTGTGTTGTGAATTCAAATTATAGCAGCTCCAATGTGCTTTTCAATCTTGCGATTTCCGAAATTTGGAGTCCCTATTTTAGCTAACCTTTGGAGGGAAAACTTTCATCCCTTGAACAGAAATCAAGGGCATAGTTATTGGTATGATCAACTTTATTTTAGGATCTATAACCTTGAAGGAGGGCAGAACAAGAGATGGACCAGAAAATCTGTGACTAGCAAAGCAGGGAGGGAAGCAAAAACCAACCCTAGCAGTAAACCGACCAATATCAGGAATGAAATCCTTGAGGAATCGGTGTCAGCAAGCTCTACAGTTGACATTTGTAAGTCTGAGAAAAGTGGAACGCAGAAGCTTCAATATTGTGATATTCAACCAACAATTATTAAGAACAAGGAATTGGCTCACCCGGTGACAGTTATAACCTTTGACATTGAAACGACAGGTTTTAGTAGAAACCTCGATAGAATAGTGGAAATTGCATTTCAAGATCTTTCAGGAGGAGAAAACAGCACCTTTCAAACATTAATAAATCCGGATTGCTTTATTACAAATTCATTCGTACATCGCATTACAAACCATATGGTCGAAAGGCCCACTGTTCCAAGGTATCGAAATGTTGGTAGTTGTCTCATTTCTCTTATATCTTCAATGCAGTTCACTGCTAGTTACAATCATTTATCAATCATATATTTTTGTACATATTCAAACGTTCCTTTTCTATGTTCATATAGGATGCAGGAACTTATTCCAATTATATTACAATTTGTCGAAAGCCGTCAGAAACCTGGTGGTTATGTATTATTGGTAGCTCATAATGCTCGTACCTTCGACGTACCCTTTTTACTCAATGAATTCAGCCGTTACTCTGTTGATATTCCTCCAAATTGGCTATTTCTCGATACTATGATGTTAGCTCGTCAACTGATGAAGTTATCCGGTTAGTTTTCCGTTTCCACATATTATCATGCTCTAGTTTCTCTGTGAATAAAAGGAGTGTGATGAAATGTAATATTGTTGATGGTAATATCGTGATCAGATTCGAAGATTACAAAAATAACGTTAGGAGCTCTTCGTGAGTATTACAAAATAAAACCGGTGGGTGAAGATCATCGAGCATTGGCGGATGTGATGTCGTTGTCATCGATTCTTCAAAGGCTTACTTTCGACCTTAAGCTAGATATCTCAGATCTCGTTGAAAGAGCTTTCACTCCTTTAGATCTGATAAATAAGAAGAAAAAATAGTGTGTTGGAGTTATGTGCACAAATCAATCTTAACTTAGTGATGAAGCTATGCTTTTGTTGTAATGTTCTTTACTAATTGTTGCGACTTTTATTGATTCTTATTTGAACAATTTTGGGTCATTTTATGGTCAGCAGATGCTTCTCGATGTCCATATTCTCCAAAAACGAGTGGATGAATTGAAATGTCAGGACATGGTTGTTTACAAAGAAATATGTAAGGAAGATCTTTGTTCTATTCCTTTTCTTTTTAAAATTTAATTTTAGTACAATTGGGATTATGAAAA

mRNA sequence

AGAAGCTGTTTTTTCTTCCGACCTCCATGTCTCCCAAAAGCACCTCTCCATCTTCTTCCACGCCATTTACTCCACTTCTTTTTCTCCTTTAGCTTACGTTATTCCTTTGGTTTTCAATGCACCATAATCCTCCCTCAGATTTCCATTCAGCAGTGCTTCGTTTGGACGTTTTTAAGTGCGACCGATCAATTGGTTGAAGACAATTGATTCTGATGCTGGATTTTGTTGGGTTTTCTGTCTAGATTTCCTCTTGTTGTGTTGTGAATTCAAATTATAGCAGCTCCAATGTGCTTTTCAATCTTGCGATTTCCGAAATTTGGAGTCCCTATTTTAGCTAACCTTTGGAGGGAAAACTTTCATCCCTTGAACAGAAATCAAGGGCATAGTTATTGGTATGATCAACTTTATTTTAGGATCTATAACCTTGAAGGAGGGCAGAACAAGAGATGGACCAGAAAATCTGTGACTAGCAAAGCAGGGAGGGAAGCAAAAACCAACCCTAGCAGTAAACCGACCAATATCAGGAATGAAATCCTTGAGGAATCGGTGTCAGCAAGCTCTACAGTTGACATTTGTAAGTCTGAGAAAAGTGGAACGCAGAAGCTTCAATATTGTGATATTCAACCAACAATTATTAAGAACAAGGAATTGGCTCACCCGGTGACAGTTATAACCTTTGACATTGAAACGACAGGTTTTAGTAGAAACCTCGATAGAATAGTGGAAATTGCATTTCAAGATCTTTCAGGAGGAGAAAACAGCACCTTTCAAACATTAATAAATCCGGATTGCTTTATTACAAATTCATTCGTACATCGCATTACAAACCATATGGTCGAAAGGCCCACTGTTCCAAGGATGCAGGAACTTATTCCAATTATATTACAATTTGTCGAAAGCCGTCAGAAACCTGGTGGTTATGTATTATTGGTAGCTCATAATGCTCGTACCTTCGACGTACCCTTTTTACTCAATGAATTCAGCCGTTACTCTGTTGATATTCCTCCAAATTGGCTATTTCTCGATACTATGATGTTAGCTCGTCAACTGATGAAGTTATCCGATTCGAAGATTACAAAAATAACGTTAGGAGCTCTTCGTGAGTATTACAAAATAAAACCGGTGGGTGAAGATCATCGAGCATTGGCGGATGTGATGTCGTTGTCATCGATTCTTCAAAGGCTTACTTTCGACCTTAAGCTAGATATCTCAGATCTCGTTGAAAGAGCTTTCACTCCTTTAGATCTGATAAATAAGAAGAAAAAATAGTGTGTTGGAGTTATGTGCACAAATCAATCTTAACTTAGTGATGAAGCTATGCTTTTGTTGTAATGTTCTTTACTAATTGTTGCGACTTTTATTGATTCTTATTTGAACAATTTTGGGTCATTTTATGGTCAGCAGATGCTTCTCGATGTCCATATTCTCCAAAAACGAGTGGATGAATTGAAATGTCAGGACATGGTTGTTTACAAAGAAATATGTAAGGAAGATCTTTGTTCTATTCCTTTTCTTTTTAAAATTTAATTTTAGTACAATTGGGATTATGAAAA

Coding sequence (CDS)

ATGTGCTTTTCAATCTTGCGATTTCCGAAATTTGGAGTCCCTATTTTAGCTAACCTTTGGAGGGAAAACTTTCATCCCTTGAACAGAAATCAAGGGCATAGTTATTGGTATGATCAACTTTATTTTAGGATCTATAACCTTGAAGGAGGGCAGAACAAGAGATGGACCAGAAAATCTGTGACTAGCAAAGCAGGGAGGGAAGCAAAAACCAACCCTAGCAGTAAACCGACCAATATCAGGAATGAAATCCTTGAGGAATCGGTGTCAGCAAGCTCTACAGTTGACATTTGTAAGTCTGAGAAAAGTGGAACGCAGAAGCTTCAATATTGTGATATTCAACCAACAATTATTAAGAACAAGGAATTGGCTCACCCGGTGACAGTTATAACCTTTGACATTGAAACGACAGGTTTTAGTAGAAACCTCGATAGAATAGTGGAAATTGCATTTCAAGATCTTTCAGGAGGAGAAAACAGCACCTTTCAAACATTAATAAATCCGGATTGCTTTATTACAAATTCATTCGTACATCGCATTACAAACCATATGGTCGAAAGGCCCACTGTTCCAAGGATGCAGGAACTTATTCCAATTATATTACAATTTGTCGAAAGCCGTCAGAAACCTGGTGGTTATGTATTATTGGTAGCTCATAATGCTCGTACCTTCGACGTACCCTTTTTACTCAATGAATTCAGCCGTTACTCTGTTGATATTCCTCCAAATTGGCTATTTCTCGATACTATGATGTTAGCTCGTCAACTGATGAAGTTATCCGATTCGAAGATTACAAAAATAACGTTAGGAGCTCTTCGTGAGTATTACAAAATAAAACCGGTGGGTGAAGATCATCGAGCATTGGCGGATGTGATGTCGTTGTCATCGATTCTTCAAAGGCTTACTTTCGACCTTAAGCTAGATATCTCAGATCTCGTTGAAAGAGCTTTCACTCCTTTAGATCTGATAAATAAGAAGAAAAAATAG

Protein sequence

MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSVTSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNKELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCFITNSFVHRITNHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDIPPNWLFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADVMSLSSILQRLTFDLKLDISDLVERAFTPLDLINKKKK

Homology

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BLAST of PI0008842 vs. ExPASy Swiss-Prot
Match: Q682U6 (Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=DPD1 PE=1 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.3e-59
Identity = 136/323 (42.11%), Postives = 197/323 (60.99%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MC SI +  +  +    +   E  H   +N       D    R  +++G    RW R++V
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKNSSSLKLLD---VRASSVDG--KARWIRRNV 60

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           +        T      +N ++ +L  +V  +  +D    E+S T+   + ++Q  + ++K
Sbjct: 61  S--------TTTQGSRSNTKSSVLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCF-ITNSFVHRI 180
           +L+  +TVI  D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    ITN+ +H I
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 181 TNHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDI 240
            N MV RP VPRM+ELIPI L++VESRQKPGGYV+LVAHN ++FD  FL+NEF+R S +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 241 PPNWLFLDTMMLARQLMKLSDSKI-TKITLGALREYYKIKPVGEDHRALADVMSLSSILQ 300
           P NWL LD++ LAR+ MK  +  +    +L AL +YY +   G+ HRAL+DV+ LS + Q
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 301 RLTFDLKLDISDLVERAFTPLDL 322
           +LT DLKL +SDLV R  T  D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

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BLAST of PI0008842 vs. ExPASy Swiss-Prot
Match: Q895K2 (DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) OX=212717 GN=polC PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-10
Identity = 56/198 (28.28%), Postives = 93/198 (46.97%), Query Frame = 0


Query: 129 ITFDIETTGFSRNLDRIVEIAFQDLSGGE-NSTFQTLINPDCFITNSFVHRITNHMVERP 188
           + FDIETTGFS   D+I+EI    +  G+    + T +NP+  I    +     H     
Sbjct: 414 VVFDIETTGFSNKNDKIIEIGAVKIKEGKVVDKYSTFVNPERIIPEKIIELTGIHDYMVK 473

Query: 189 TVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDIPPNWLFLD 248
             P+++E++P  + F+E         +LVAHNA  FDV F+      + +    N   LD
Sbjct: 474 DAPKIEEVLPKFIDFIEDS-------ILVAHNA-NFDVSFIKKNCKDFGIHF--NNPILD 533

Query: 249 TMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADVMSLSSILQRLTFDLK-- 308
           T+ L + L      ++ +  L  + ++  I P+   HRA+ D  +   IL +   DLK  
Sbjct: 534 TIPLCKFLY----PELKRYKLNVVAKHLGI-PLLNHHRAVEDAKTTGDILLKAFEDLKDK 593

Query: 309 --LDISDLVERAFTPLDL 322
             ++++ L E  F   D+
Sbjct: 594 EIMNLNMLNEEYFKNQDI 596

[Close]

BLAST of PI0008842 vs. ExPASy Swiss-Prot
Match: Q8RA32 (DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=polC PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.0e-09
Identity = 55/191 (28.80%), Postives = 95/191 (49.74%), Query Frame = 0


Query: 114 PTIIKNKELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGE-NSTFQTLINPDCFIT 173
           P +    E +     + FDIETTG S   D I+EI    +   +   TF+T +NP   I 
Sbjct: 374 PIVTGESEASLEGEFVVFDIETTGLSNINDEIIEIGAVKIKNKKIVDTFETFVNPQIPI- 433

Query: 174 NSFVHRIT---NHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLL 233
           +SF+ ++T     MV+    P ++E++P  L+F +         +LVAHNA  FDV F+ 
Sbjct: 434 SSFITKLTGIDESMVK--DAPLIEEVLPKFLEFAKG-------AVLVAHNA-NFDVSFIK 493

Query: 234 NEFSRYSVDIPPNWLFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALAD 293
           ++  +  + +      LDT+ L+R L +     +    L  L E++++K +   HRA+ D
Sbjct: 494 SKAKKLGLTVENT--VLDTLELSRHLYQ----DLKNYKLDTLAEFFEVKLL-HHHRAVED 546

Query: 294 VMSLSSILQRL 301
             + + I  ++
Sbjct: 554 AKATAEIFIKM 546

[Close]

BLAST of PI0008842 vs. ExPASy Swiss-Prot
Match: Q8XJR3 (DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) OX=195102 GN=polC PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.0e-09
Identity = 62/203 (30.54%), Postives = 94/203 (46.31%), Query Frame = 0


Query: 114 PTIIKNKELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGE-NSTFQTLINPDCFIT 173
           P +I   E +     + FDIETTGFS   D+I+EI    L  GE   +F T ++P   I 
Sbjct: 421 PIVINGHEESFDDEYVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIP 480

Query: 174 NSFVH--RITNHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLN 233
                   IT +MV     P + E++P  ++FV       G  +LVAHNA  FDV F+  
Sbjct: 481 YKITELTSITQNMVNGQ--PTIDEVLPKFMEFV-------GNSVLVAHNA-AFDVGFIKK 540

Query: 234 EFSRYSVDIPPNWLFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADV 293
                   +      +DT+ LAR L       + K+ L  + ++  I  +   HRA+ D 
Sbjct: 541 NLMDMGKTLKNP--VMDTVPLARYLY----PDLKKVKLNLVAKHLGIS-LENHHRAVDDA 600

Query: 294 MSLSSILQRLTFDLK--LDISDL 312
            + + IL+     +K  +DI D+
Sbjct: 601 KATAEILKFSFKKMKEEMDIHDV 606

[Close]

BLAST of PI0008842 vs. ExPASy Swiss-Prot
Match: Q38W73 (DNA polymerase III PolC-type OS=Lactobacillus sakei subsp. sakei (strain 23K) OX=314315 GN=polC PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.8e-06
Identity = 54/177 (30.51%), Postives = 85/177 (48.02%), Query Frame = 0


Query: 129 ITFDIETTGFSRNLDRIVEIAFQDLSGGE-NSTFQTLINPD----CFITNSFVHRITNHM 188
           + FD+ETTG S   D I+E+A   +  GE  ++F   I+P+     F T   +  ITN M
Sbjct: 426 VIFDVETTGLSAVYDSIIELAAVKMRDGEVVASFDEFIDPERPLSAFTTQ--LTSITNEM 485

Query: 189 VERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDIPPNW 248
           V      +  E++ +  +F        G  +L  HN  +FD+ FL   + R  +D+  N 
Sbjct: 486 VH--GAKKEAEVLAMFKEFT-------GDAVLAGHNV-SFDMGFLNAGYERNDIDLIDNP 545

Query: 249 LFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADVMSLSSILQRL 301
           + +DT+ L+R L      +     L +L + YKI  +   HRA AD  S   +L +L
Sbjct: 546 V-IDTLELSRML----HPEYKNHKLDSLTKRYKIN-LEHHHRANADAESTGYLLYKL 584

[Close]

BLAST of PI0008842 vs. ExPASy TrEMBL
Match: A0A1S4DY73 (exonuclease DPD1, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492132 PE=4 SV=1)

HSP 1 Score: 554.3 bits (1427), Expect = 3.4e-154
Identity = 280/327 (85.63%), Postives = 300/327 (91.74%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MCFSI RFPKFGVPILANLWRENFHPLNRN GHS WYDQL FRIYNLEGGQNKRWTRKS+
Sbjct: 1   MCFSIFRFPKFGVPILANLWRENFHPLNRNHGHSCWYDQLCFRIYNLEGGQNKRWTRKSI 60

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           T+KAG +AKTNPSSKPTNI NEIL+ES+SAS TV++ KSEKSGTQKLQYCDIQPTIIK+K
Sbjct: 61  TTKAGGKAKTNPSSKPTNITNEILQESMSASCTVNVNKSEKSGTQKLQYCDIQPTIIKSK 120

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCFITNSFVHRIT 180
           E  HPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLI+P C+ITNS +H IT
Sbjct: 121 EFIHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLIDPQCYITNSSIHGIT 180

Query: 181 NHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDIP 240
           N+MV    VPRMQELIPIILQFV+SRQKPGGYVLLVAHNARTFDVPFLL+EFSRYS+DIP
Sbjct: 181 NNMVASCGVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLHEFSRYSIDIP 240

Query: 241 PNWLFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADVMSLSSILQRL 300
            +WLFLDTM LARQLMKLSDSKITKI+L AL EYY I+  GE HRAL DV+SLS ILQRL
Sbjct: 241 QDWLFLDTMTLARQLMKLSDSKITKISLEALCEYYGIEVDGEAHRALPDVISLSLILQRL 300

Query: 301 TFDLKLDISDLVERAFTPLDLINKKKK 328
           TFDLKLD+SDLVERAFTPLDLINKKKK
Sbjct: 301 TFDLKLDVSDLVERAFTPLDLINKKKK 327

[Close]

BLAST of PI0008842 vs. ExPASy TrEMBL
Match: A0A0A0LVY3 (Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569080 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 2.2e-153
Identity = 279/327 (85.32%), Postives = 299/327 (91.44%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MC SI RFPK+GVP+LANLWRENFHPLNRN GH+ WYDQL FRIYNLEGG+NKRWTRKS+
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           T+KAG +AKTNPSSKPTNIRNEIL+ES+ AS TV+I KSEKS TQKLQYCDIQPTIIK+K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESMLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCFITNSFVHRIT 180
           E AH VTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINP C+ITNS +H I+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 181 NHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDIP 240
           N MV+ P+VPRMQELIPIILQFV+SRQKPGGYVLLVAHNARTFDVPFLL+EFSRYSVDIP
Sbjct: 181 NRMVDSPSVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 241 PNWLFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADVMSLSSILQRL 300
            NWLF DTM LARQLMKLSDSKITKITL AL EYY IK  G+ HRAL+DV  LSSILQRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 301 TFDLKLDISDLVERAFTPLDLINKKKK 328
           TFDLKLDISDLVERAFTPLDLINKKKK
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKKK 327

[Close]

BLAST of PI0008842 vs. ExPASy TrEMBL
Match: A0A0N9LRH7 (Exonuclease DPD1 OS=Cucumis sativus OX=3659 GN=DPD1 PE=2 SV=1)

HSP 1 Score: 550.4 bits (1417), Expect = 4.9e-153
Identity = 279/327 (85.32%), Postives = 298/327 (91.13%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MC SI RFPK+GVP+LANLWRENFHPLNRN GH+ WYDQL FRIYNLEGG+NKRWTRKS+
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           T+KAG +AKTNPSSKPTNIRNEIL+ESV AS TV+I KSEKS TQKLQYCDIQPTIIK+K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESVLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCFITNSFVHRIT 180
           E AH VTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINP C+ITNS +H I+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 181 NHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDIP 240
           N MV+ P+VP MQELIPIILQFV+SRQKPGGYVLLVAHNARTFDVPFLL+EFSRYSVDIP
Sbjct: 181 NRMVDSPSVPSMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 241 PNWLFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADVMSLSSILQRL 300
            NWLF DTM LARQLMKLSDSKITKITL AL EYY IK  G+ HRAL+DV  LSSILQRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 301 TFDLKLDISDLVERAFTPLDLINKKKK 328
           TFDLKLDISDLVERAFTPLDLINKKKK
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKKK 327

[Close]

BLAST of PI0008842 vs. ExPASy TrEMBL
Match: A0A6J1HUD7 (exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111467897 PE=4 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 2.3e-142
Identity = 263/327 (80.43%), Postives = 286/327 (87.46%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MCFSILR PKFGVP LANLWRENFHPLNRN GHS WYDQL FRIYNLEGGQ+KRWTRKS+
Sbjct: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRWTRKSM 65

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           T+KAGR+AKTNPSSKP+NIRNEILEESVS S TV I KSEK GTQKLQ C+IQ TIIK+K
Sbjct: 66  TTKAGRKAKTNPSSKPSNIRNEILEESVSTSCTVSINKSEKYGTQKLQCCNIQETIIKDK 125

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCFITNSFVHRIT 180
           ELA PVTVITFDIETTGFSR LDRIVEIA QDLSGGENSTFQTLINP+C+I N+ VH IT
Sbjct: 126 ELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAVVHGIT 185

Query: 181 NHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDIP 240
           + MV RP VPRM+ELIPI+LQFV+SRQKP GYVLLVAHNAR FDVPFLL EFSR SVDIP
Sbjct: 186 SRMVSRPDVPRMKELIPILLQFVKSRQKPDGYVLLVAHNARIFDVPFLLKEFSRCSVDIP 245

Query: 241 PNWLFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADVMSLSSILQRL 300
            NWLF D ++LARQLMK +DSKITKI+L ALREYY I  VG  HRA++DV +LS ILQRL
Sbjct: 246 LNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSLILQRL 305

Query: 301 TFDLKLDISDLVERAFTPLDLINKKKK 328
           TFDLKL I DL+ER+FT  DLINKKKK
Sbjct: 306 TFDLKLGIPDLIERSFTTSDLINKKKK 332

[Close]

BLAST of PI0008842 vs. ExPASy TrEMBL
Match: A0A6J1HDU6 (exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111461962 PE=4 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 5.7e-141
Identity = 258/326 (79.14%), Postives = 286/326 (87.73%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MCFSILR PKFGVP LANLWRENFHPLNRN GHS WYDQL FR YNLEGGQ+KRWTRKS+
Sbjct: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRTYNLEGGQDKRWTRKSM 65

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           ++KAGR+AKT+PSSKP+NIRNEILEESVS S TV I KSEK+GTQKLQ C+IQ TI+K+K
Sbjct: 66  STKAGRKAKTDPSSKPSNIRNEILEESVSTSCTVSINKSEKNGTQKLQCCNIQETIVKDK 125

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCFITNSFVHRIT 180
           ELA PVTVITFDIETTGFSR LDRIVEIA QDLSGGENSTFQTLINP+C+I N+ VH IT
Sbjct: 126 ELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAVVHGIT 185

Query: 181 NHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDIP 240
           + MV RP VPRM+ELIPI+LQF++SRQKP GYVLLVAHNARTFDVPFLL EFSR SVDIP
Sbjct: 186 SRMVSRPDVPRMKELIPILLQFIKSRQKPDGYVLLVAHNARTFDVPFLLKEFSRCSVDIP 245

Query: 241 PNWLFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADVMSLSSILQRL 300
            NWLF D ++LARQLMK +DSKITKI+L ALREYY I  VG  HRA++DV +LS ILQRL
Sbjct: 246 LNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSLILQRL 305

Query: 301 TFDLKLDISDLVERAFTPLDLINKKK 327
           TFDLKL I DL+ER+FT  DLINKKK
Sbjct: 306 TFDLKLGIPDLIERSFTTSDLINKKK 331

[Close]

BLAST of PI0008842 vs. NCBI nr
Match: XP_008450585.1 (PREDICTED: exonuclease DPD1, chloroplastic/mitochondrial [Cucumis melo] >XP_016900923.1 PREDICTED: exonuclease DPD1, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 554.3 bits (1427), Expect = 7.1e-154
Identity = 280/327 (85.63%), Postives = 300/327 (91.74%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MCFSI RFPKFGVPILANLWRENFHPLNRN GHS WYDQL FRIYNLEGGQNKRWTRKS+
Sbjct: 1   MCFSIFRFPKFGVPILANLWRENFHPLNRNHGHSCWYDQLCFRIYNLEGGQNKRWTRKSI 60

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           T+KAG +AKTNPSSKPTNI NEIL+ES+SAS TV++ KSEKSGTQKLQYCDIQPTIIK+K
Sbjct: 61  TTKAGGKAKTNPSSKPTNITNEILQESMSASCTVNVNKSEKSGTQKLQYCDIQPTIIKSK 120

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCFITNSFVHRIT 180
           E  HPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLI+P C+ITNS +H IT
Sbjct: 121 EFIHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLIDPQCYITNSSIHGIT 180

Query: 181 NHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDIP 240
           N+MV    VPRMQELIPIILQFV+SRQKPGGYVLLVAHNARTFDVPFLL+EFSRYS+DIP
Sbjct: 181 NNMVASCGVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLHEFSRYSIDIP 240

Query: 241 PNWLFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADVMSLSSILQRL 300
            +WLFLDTM LARQLMKLSDSKITKI+L AL EYY I+  GE HRAL DV+SLS ILQRL
Sbjct: 241 QDWLFLDTMTLARQLMKLSDSKITKISLEALCEYYGIEVDGEAHRALPDVISLSLILQRL 300

Query: 301 TFDLKLDISDLVERAFTPLDLINKKKK 328
           TFDLKLD+SDLVERAFTPLDLINKKKK
Sbjct: 301 TFDLKLDVSDLVERAFTPLDLINKKKK 327

[Close]

BLAST of PI0008842 vs. NCBI nr
Match: XP_004135590.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucumis sativus] >KGN66030.1 hypothetical protein Csa_007467 [Cucumis sativus])

HSP 1 Score: 551.6 bits (1420), Expect = 4.6e-153
Identity = 279/327 (85.32%), Postives = 299/327 (91.44%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MC SI RFPK+GVP+LANLWRENFHPLNRN GH+ WYDQL FRIYNLEGG+NKRWTRKS+
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           T+KAG +AKTNPSSKPTNIRNEIL+ES+ AS TV+I KSEKS TQKLQYCDIQPTIIK+K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESMLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCFITNSFVHRIT 180
           E AH VTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINP C+ITNS +H I+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 181 NHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDIP 240
           N MV+ P+VPRMQELIPIILQFV+SRQKPGGYVLLVAHNARTFDVPFLL+EFSRYSVDIP
Sbjct: 181 NRMVDSPSVPRMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 241 PNWLFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADVMSLSSILQRL 300
            NWLF DTM LARQLMKLSDSKITKITL AL EYY IK  G+ HRAL+DV  LSSILQRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 301 TFDLKLDISDLVERAFTPLDLINKKKK 328
           TFDLKLDISDLVERAFTPLDLINKKKK
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKKK 327

[Close]

BLAST of PI0008842 vs. NCBI nr
Match: ALG62680.1 (exonuclease DPD1 [Cucumis sativus] >ALG62681.1 exonuclease DPD1 [Cucumis sativus])

HSP 1 Score: 550.4 bits (1417), Expect = 1.0e-152
Identity = 279/327 (85.32%), Postives = 298/327 (91.13%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MC SI RFPK+GVP+LANLWRENFHPLNRN GH+ WYDQL FRIYNLEGG+NKRWTRKS+
Sbjct: 1   MCLSIFRFPKYGVPVLANLWRENFHPLNRNHGHNCWYDQLCFRIYNLEGGRNKRWTRKSI 60

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           T+KAG +AKTNPSSKPTNIRNEIL+ESV AS TV+I KSEKS TQKLQYCDIQPTIIK+K
Sbjct: 61  TTKAGEKAKTNPSSKPTNIRNEILQESVLASCTVNINKSEKSETQKLQYCDIQPTIIKSK 120

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCFITNSFVHRIT 180
           E AH VTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINP C+ITNS +H I+
Sbjct: 121 EFAHLVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPQCYITNSNIHGIS 180

Query: 181 NHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDIP 240
           N MV+ P+VP MQELIPIILQFV+SRQKPGGYVLLVAHNARTFDVPFLL+EFSRYSVDIP
Sbjct: 181 NRMVDSPSVPSMQELIPIILQFVKSRQKPGGYVLLVAHNARTFDVPFLLSEFSRYSVDIP 240

Query: 241 PNWLFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADVMSLSSILQRL 300
            NWLF DTM LARQLMKLSDSKITKITL AL EYY IK  G+ HRAL+DV  LSSILQRL
Sbjct: 241 LNWLFFDTMTLARQLMKLSDSKITKITLQALGEYYGIKLDGKAHRALSDVRLLSSILQRL 300

Query: 301 TFDLKLDISDLVERAFTPLDLINKKKK 328
           TFDLKLDISDLVERAFTPLDLINKKKK
Sbjct: 301 TFDLKLDISDLVERAFTPLDLINKKKK 327

[Close]

BLAST of PI0008842 vs. NCBI nr
Match: XP_038878496.1 (exonuclease DPD1, chloroplastic/mitochondrial isoform X1 [Benincasa hispida] >XP_038878497.1 exonuclease DPD1, chloroplastic/mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 521.5 bits (1342), Expect = 5.1e-144
Identity = 269/328 (82.01%), Postives = 287/328 (87.50%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MCFSILRFPKFGVP LANLWRENFHPLNRN  HS W+DQL FRIYNLEGGQNKRW RKS+
Sbjct: 6   MCFSILRFPKFGVPTLANLWRENFHPLNRNCYHSSWHDQLGFRIYNLEGGQNKRWIRKSM 65

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           T+KAGR+AK NPSSKPTNIRNEILEES+S S TV I KSEKS TQKLQYCDIQ  IIKNK
Sbjct: 66  TTKAGRKAKANPSSKPTNIRNEILEESISTSCTVSINKSEKSETQKLQYCDIQQLIIKNK 125

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCFITNSFVHRIT 180
           ELA PVTVITFDIETTGFSRNLDRIVEIA QDLSGGENSTFQTLINP+C+I NS VH IT
Sbjct: 126 ELARPVTVITFDIETTGFSRNLDRIVEIALQDLSGGENSTFQTLINPECYIPNSVVHGIT 185

Query: 181 NHMVERPTVPRMQELIPIILQFVESR--QKPGGYVLLVAHNARTFDVPFLLNEFSRYSVD 240
           NHMV RP VPRM+ELIPI+LQFVESR  QKP GYVLLVAHNARTFDVPFLL EFSR S D
Sbjct: 186 NHMVSRPDVPRMKELIPILLQFVESRQKQKPDGYVLLVAHNARTFDVPFLLKEFSRCSFD 245

Query: 241 IPPNWLFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADVMSLSSILQ 300
           IPPNW F D++ LARQLMK SDSKITKI+L ALREYY I+ VG  HRA++DV SLS ILQ
Sbjct: 246 IPPNWRFFDSIPLARQLMKSSDSKITKISLQALREYYDIQLVGSAHRAMSDVRSLSLILQ 305

Query: 301 RLTFDLKLDISDLVERAFTPLDLINKKK 327
           RLTF+LKL ISDL+ER+FT  DLINKKK
Sbjct: 306 RLTFELKLGISDLIERSFTASDLINKKK 333

[Close]

BLAST of PI0008842 vs. NCBI nr
Match: XP_022968752.1 (exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima] >XP_022968753.1 exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima])

HSP 1 Score: 515.0 bits (1325), Expect = 4.7e-142
Identity = 263/327 (80.43%), Postives = 286/327 (87.46%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MCFSILR PKFGVP LANLWRENFHPLNRN GHS WYDQL FRIYNLEGGQ+KRWTRKS+
Sbjct: 6   MCFSILRVPKFGVPTLANLWRENFHPLNRNYGHSSWYDQLGFRIYNLEGGQDKRWTRKSM 65

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           T+KAGR+AKTNPSSKP+NIRNEILEESVS S TV I KSEK GTQKLQ C+IQ TIIK+K
Sbjct: 66  TTKAGRKAKTNPSSKPSNIRNEILEESVSTSCTVSINKSEKYGTQKLQCCNIQETIIKDK 125

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCFITNSFVHRIT 180
           ELA PVTVITFDIETTGFSR LDRIVEIA QDLSGGENSTFQTLINP+C+I N+ VH IT
Sbjct: 126 ELARPVTVITFDIETTGFSRELDRIVEIALQDLSGGENSTFQTLINPECYIPNAVVHGIT 185

Query: 181 NHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDIP 240
           + MV RP VPRM+ELIPI+LQFV+SRQKP GYVLLVAHNAR FDVPFLL EFSR SVDIP
Sbjct: 186 SRMVSRPDVPRMKELIPILLQFVKSRQKPDGYVLLVAHNARIFDVPFLLKEFSRCSVDIP 245

Query: 241 PNWLFLDTMMLARQLMKLSDSKITKITLGALREYYKIKPVGEDHRALADVMSLSSILQRL 300
            NWLF D ++LARQLMK +DSKITKI+L ALREYY I  VG  HRA++DV +LS ILQRL
Sbjct: 246 LNWLFFDNILLARQLMKSTDSKITKISLQALREYYNIPLVGSAHRAMSDVRTLSLILQRL 305

Query: 301 TFDLKLDISDLVERAFTPLDLINKKKK 328
           TFDLKL I DL+ER+FT  DLINKKKK
Sbjct: 306 TFDLKLGIPDLIERSFTTSDLINKKKK 332

[Close]

BLAST of PI0008842 vs. TAIR 10
Match: AT5G26940.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 230.7 bits (587), Expect = 1.7e-60
Identity = 136/323 (42.11%), Postives = 197/323 (60.99%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MC SI +  +  +    +   E  H   +N       D    R  +++G    RW R++V
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKNSSSLKLLD---VRASSVDG--KARWIRRNV 60

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           +        T      +N ++ +L  +V  +  +D    E+S T+   + ++Q  + ++K
Sbjct: 61  S--------TTTQGSRSNTKSSVLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCF-ITNSFVHRI 180
           +L+  +TVI  D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    ITN+ +H I
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 181 TNHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDI 240
            N MV RP VPRM+ELIPI L++VESRQKPGGYV+LVAHN ++FD  FL+NEF+R S +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 241 PPNWLFLDTMMLARQLMKLSDSKI-TKITLGALREYYKIKPVGEDHRALADVMSLSSILQ 300
           P NWL LD++ LAR+ MK  +  +    +L AL +YY +   G+ HRAL+DV+ LS + Q
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 301 RLTFDLKLDISDLVERAFTPLDL 322
           +LT DLKL +SDLV R  T  D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of PI0008842 vs. TAIR 10
Match: AT5G26940.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 230.7 bits (587), Expect = 1.7e-60
Identity = 136/323 (42.11%), Postives = 197/323 (60.99%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MC SI +  +  +    +   E  H   +N       D    R  +++G    RW R++V
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKNSSSLKLLD---VRASSVDG--KARWIRRNV 60

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           +        T      +N ++ +L  +V  +  +D    E+S T+   + ++Q  + ++K
Sbjct: 61  S--------TTTQGSRSNTKSSVLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCF-ITNSFVHRI 180
           +L+  +TVI  D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    ITN+ +H I
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 181 TNHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDI 240
            N MV RP VPRM+ELIPI L++VESRQKPGGYV+LVAHN ++FD  FL+NEF+R S +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 241 PPNWLFLDTMMLARQLMKLSDSKI-TKITLGALREYYKIKPVGEDHRALADVMSLSSILQ 300
           P NWL LD++ LAR+ MK  +  +    +L AL +YY +   G+ HRAL+DV+ LS + Q
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 301 RLTFDLKLDISDLVERAFTPLDL 322
           +LT DLKL +SDLV R  T  D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of PI0008842 vs. TAIR 10
Match: AT5G26940.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 230.7 bits (587), Expect = 1.7e-60
Identity = 136/323 (42.11%), Postives = 197/323 (60.99%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MC SI +  +  +    +   E  H   +N       D    R  +++G    RW R++V
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKNSSSLKLLD---VRASSVDG--KARWIRRNV 60

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           +        T      +N ++ +L  +V  +  +D    E+S T+   + ++Q  + ++K
Sbjct: 61  S--------TTTQGSRSNTKSSVLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCF-ITNSFVHRI 180
           +L+  +TVI  D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    ITN+ +H I
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 181 TNHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDI 240
            N MV RP VPRM+ELIPI L++VESRQKPGGYV+LVAHN ++FD  FL+NEF+R S +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 241 PPNWLFLDTMMLARQLMKLSDSKI-TKITLGALREYYKIKPVGEDHRALADVMSLSSILQ 300
           P NWL LD++ LAR+ MK  +  +    +L AL +YY +   G+ HRAL+DV+ LS + Q
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 301 RLTFDLKLDISDLVERAFTPLDL 322
           +LT DLKL +SDLV R  T  D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

[Close]

BLAST of PI0008842 vs. TAIR 10
Match: AT5G26940.4 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 230.7 bits (587), Expect = 1.7e-60
Identity = 136/323 (42.11%), Postives = 197/323 (60.99%), Query Frame = 0


Query: 1   MCFSILRFPKFGVPILANLWRENFHPLNRNQGHSYWYDQLYFRIYNLEGGQNKRWTRKSV 60
           MC SI +  +  +    +   E  H   +N       D    R  +++G    RW R++V
Sbjct: 1   MCISISQVSRLRIHSFGSSCCERVHGWIKNSSSLKLLD---VRASSVDG--KARWIRRNV 60

Query: 61  TSKAGREAKTNPSSKPTNIRNEILEESVSASSTVDICKSEKSGTQKLQYCDIQPTIIKNK 120
           +        T      +N ++ +L  +V  +  +D    E+S T+   + ++Q  + ++K
Sbjct: 61  S--------TTTQGSRSNTKSSVLGGTVPVTRIID----EESRTKVQPFGNLQQRLAQDK 120

Query: 121 ELAHPVTVITFDIETTGFSRNLDRIVEIAFQDLSGGENSTFQTLINPDCF-ITNSFVHRI 180
           +L+  +TVI  D+ETTG  R  +RI+EIA QD++GG  STFQTL+NP    ITN+ +H I
Sbjct: 121 DLSKLLTVIVSDLETTGLHRKNERIIEIAAQDIAGGGYSTFQTLVNPGVVPITNAHIHGI 180

Query: 181 TNHMVERPTVPRMQELIPIILQFVESRQKPGGYVLLVAHNARTFDVPFLLNEFSRYSVDI 240
            N MV RP VPRM+ELIPI L++VESRQKPGGYV+LVAHN ++FD  FL+NEF+R S +I
Sbjct: 181 RNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSFDFQFLINEFNRCSYEI 240

Query: 241 PPNWLFLDTMMLARQLMKLSDSKI-TKITLGALREYYKIKPVGEDHRALADVMSLSSILQ 300
           P NWL LD++ LAR+ MK  +  +    +L AL +YY +   G+ HRAL+DV+ LS + Q
Sbjct: 241 PHNWLLLDSLPLARENMKSVEPTVKLSSSLEALADYYSLTREGDAHRALSDVLLLSKVFQ 300

Query: 301 RLTFDLKLDISDLVERAFTPLDL 322
           +LT DLKL +SDLV R  T  D+
Sbjct: 301 KLTIDLKLSLSDLVLRCHTASDI 306

The following BLAST results are available for this feature:

BLAST of PI0008842 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682U6	2.3e-59	42.11	Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q895K2	1.2e-10	28.28	DNA polymerase III PolC-type OS=Clostridium tetani (strain Massachusetts / E88) ...	[more]
Q8RA32	1.0e-09	28.80	DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongens...	[more]
Q8XJR3	5.0e-09	30.54	DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) OX=...	[more]
Q38W73	1.8e-06	30.51	DNA polymerase III PolC-type OS=Lactobacillus sakei subsp. sakei (strain 23K) OX...	[more]

BLAST of PI0008842 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DY73	3.4e-154	85.63	exonuclease DPD1, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LVY3	2.2e-153	85.32	Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569080...	[more]
A0A0N9LRH7	4.9e-153	85.32	Exonuclease DPD1 OS=Cucumis sativus OX=3659 GN=DPD1 PE=2 SV=1	[more]
A0A6J1HUD7	2.3e-142	80.43	exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1HDU6	5.7e-141	79.14	exonuclease DPD1, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of PI0008842 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450585.1	7.1e-154	85.63	PREDICTED: exonuclease DPD1, chloroplastic/mitochondrial [Cucumis melo] >XP_0169...	[more]
XP_004135590.1	4.6e-153	85.32	exonuclease DPD1, chloroplastic/mitochondrial [Cucumis sativus] >KGN66030.1 hypo...	[more]
ALG62680.1	1.0e-152	85.32	exonuclease DPD1 [Cucumis sativus] >ALG62681.1 exonuclease DPD1 [Cucumis sativus...	[more]
XP_038878496.1	5.1e-144	82.01	exonuclease DPD1, chloroplastic/mitochondrial isoform X1 [Benincasa hispida] >XP...	[more]
XP_022968752.1	4.7e-142	80.43	exonuclease DPD1, chloroplastic/mitochondrial [Cucurbita maxima] >XP_022968753.1...	[more]

BLAST of PI0008842 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26940.1	1.7e-60	42.11	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.2	1.7e-60	42.11	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.3	1.7e-60	42.11	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G26940.4	1.7e-60	42.11	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013520	Exonuclease, RNase T/DNA polymerase III	SMART	SM00479	exoiiiendus	coord: 127..306 e-value: 2.9E-28 score: 109.9
IPR013520	Exonuclease, RNase T/DNA polymerase III	PFAM	PF00929	RNase_T	coord: 130..292 e-value: 7.4E-19 score: 68.9
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 126..311 e-value: 8.5E-42 score: 145.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..79
None	No IPR available	PANTHER	PTHR13058:SF23	POLYMERASE III POLC-TYPE, PUTATIVE ISOFORM 1-RELATED	coord: 1..323
None	No IPR available	CDD	cd06127	DEDDh	coord: 131..298 e-value: 2.59162E-37 score: 129.343
IPR040393	Three-prime repair exonuclease 1/2	PANTHER	PTHR13058	THREE PRIME REPAIR EXONUCLEASE 1, 2	coord: 1..323
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 125..300

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008842.1	PI0008842.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000738	DNA catabolic process, exonucleolytic
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0008296	3'-5'-exodeoxyribonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008408	3'-5' exonuclease activity