Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTCCTCCTTCAACCTCCCCTGTTTGCTCTGTTTTTCCTCACATCCTTCTCTCCTTCTTTGTCTTTTCCATGGAATTCTTCCTCCTTTGGTAAATCAAGCTCCAACCCATCAATCGACGACATGTTTCTCACCTCCGGCGAGTCTTCCGGCAGGCCGTCTCGCCGGAAAAACATAATTTTTGGTGCCCCTTGTGGGCTCTGTGGTCAAGTGATTTTTGGCTCTGAAGCTCTTAATCATCATTACAATTACCATTTCTTGCAGAATGAGCTTGCTTCTTTTGGAGGCCACTCTAATCCTTGCTCCGGTAGCTCTCAACGGCCACCGTTATGGTCCAATTATTTCCATGGCCAAGCCTCTGCTTCTCGAGAACCACAAATGACGCTTAACGATTATTTGACGATGCCGCCGTCTTTGAGAAGCTATTCAGGCGCCGTCATCGATATGGCTCACTTTCTTCCGCTTCATCCGTTGTTGGCTCAACCGCCGCCGCTGCCGCGAACCAGCACCGCCAATAGTATGAACCGTCAACAGAATCAGTGTGTGGCAGGGCAGAGGAGGCAGGGAAACCAAGTCCGATGGAATAACGGCGGAGTGAGGGAAGTTGGTGGCCGGCCGGCATCAGAACAGCAGCCACCCCAAGATGTGATTGATCTGAATAGTGAGGAGAATGATTGTAGCTCTGATGGTTCAGAAGGCTTGGATTTGACACTCAGTCTCTAA
mRNA sequence
ATGGCCTTCCTCCTTCAACCTCCCCTGTTTGCTCTGTTTTTCCTCACATCCTTCTCTCCTTCTTTGTCTTTTCCATGGAATTCTTCCTCCTTTGGTAAATCAAGCTCCAACCCATCAATCGACGACATGTTTCTCACCTCCGGCGAGTCTTCCGGCAGGCCGTCTCGCCGGAAAAACATAATTTTTGGTGCCCCTTGTGGGCTCTGTGGTCAAGTGATTTTTGGCTCTGAAGCTCTTAATCATCATTACAATTACCATTTCTTGCAGAATGAGCTTGCTTCTTTTGGAGGCCACTCTAATCCTTGCTCCGGTAGCTCTCAACGGCCACCGTTATGGTCCAATTATTTCCATGGCCAAGCCTCTGCTTCTCGAGAACCACAAATGACGCTTAACGATTATTTGACGATGCCGCCGTCTTTGAGAAGCTATTCAGGCGCCGTCATCGATATGGCTCACTTTCTTCCGCTTCATCCGTTGTTGGCTCAACCGCCGCCGCTGCCGCGAACCAGCACCGCCAATAGTATGAACCGTCAACAGAATCAGTGTGTGGCAGGGCAGAGGAGGCAGGGAAACCAAGTCCGATGGAATAACGGCGGAGTGAGGGAAGTTGGTGGCCGGCCGGCATCAGAACAGCAGCCACCCCAAGATGTGATTGATCTGAATAGTGAGGAGAATGATTGTAGCTCTGATGGTTCAGAAGGCTTGGATTTGACACTCAGTCTCTAA
Coding sequence (CDS)
ATGGCCTTCCTCCTTCAACCTCCCCTGTTTGCTCTGTTTTTCCTCACATCCTTCTCTCCTTCTTTGTCTTTTCCATGGAATTCTTCCTCCTTTGGTAAATCAAGCTCCAACCCATCAATCGACGACATGTTTCTCACCTCCGGCGAGTCTTCCGGCAGGCCGTCTCGCCGGAAAAACATAATTTTTGGTGCCCCTTGTGGGCTCTGTGGTCAAGTGATTTTTGGCTCTGAAGCTCTTAATCATCATTACAATTACCATTTCTTGCAGAATGAGCTTGCTTCTTTTGGAGGCCACTCTAATCCTTGCTCCGGTAGCTCTCAACGGCCACCGTTATGGTCCAATTATTTCCATGGCCAAGCCTCTGCTTCTCGAGAACCACAAATGACGCTTAACGATTATTTGACGATGCCGCCGTCTTTGAGAAGCTATTCAGGCGCCGTCATCGATATGGCTCACTTTCTTCCGCTTCATCCGTTGTTGGCTCAACCGCCGCCGCTGCCGCGAACCAGCACCGCCAATAGTATGAACCGTCAACAGAATCAGTGTGTGGCAGGGCAGAGGAGGCAGGGAAACCAAGTCCGATGGAATAACGGCGGAGTGAGGGAAGTTGGTGGCCGGCCGGCATCAGAACAGCAGCCACCCCAAGATGTGATTGATCTGAATAGTGAGGAGAATGATTGTAGCTCTGATGGTTCAGAAGGCTTGGATTTGACACTCAGTCTCTAA
Protein sequence
MAFLLQPPLFALFFLTSFSPSLSFPWNSSSFGKSSSNPSIDDMFLTSGESSGRPSRRKNIIFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFGGHSNPCSGSSQRPPLWSNYFHGQASASREPQMTLNDYLTMPPSLRSYSGAVIDMAHFLPLHPLLAQPPPLPRTSTANSMNRQQNQCVAGQRRQGNQVRWNNGGVREVGGRPASEQQPPQDVIDLNSEENDCSSDGSEGLDLTLSL
Homology
BLAST of PI0008785 vs. ExPASy TrEMBL
Match:
A0A0A0L892 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134950 PE=4 SV=1)
HSP 1 Score: 435.6 bits (1119), Expect = 1.3e-118
Identity = 219/241 (90.87%), Postives = 226/241 (93.78%), Query Frame = 0
Query: 1 MAFLLQPPLFALFFLTSFSPSLSFPWNSSSFGKSSSNPSIDDMFLTSGESSGRPSRRKNI 60
M FLLQPPLFALFFLTSFSPSLSFP NSSSFG+SSSNPS+++M TS ESSGRPSRRKN
Sbjct: 1 MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT 60
Query: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFGGHSNPCSGSSQRPPLWSNYFHGQA 120
IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASF GHSNP SG SQRPPLWSNYFHGQA
Sbjct: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQA 120
Query: 121 SASREPQMTLNDYLTMPPSLRSYSGAVIDMAHFLPLHPLLAQPPPLPRTSTANSMNRQQN 180
SASREPQMTLNDYLTMPPSLRSYSGA IDMAHFLPLHPLLAQPPPLPRTSTAN MN QQN
Sbjct: 121 SASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQN 180
Query: 181 QCVAGQRRQGNQVRWNNGGVREVGGRPASEQQPPQDVIDLNSEENDCSSDGSEGLDLTLS 240
Q VAG RRQGNQV+WNNGGVREVGG+PASE+QPPQDVIDLNSEENDCSSD SEGLDLTLS
Sbjct: 181 QAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLS 240
Query: 241 L 242
L
Sbjct: 241 L 241
BLAST of PI0008785 vs. ExPASy TrEMBL
Match:
A0A5A7U6I9 (C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001720 PE=4 SV=1)
HSP 1 Score: 412.1 bits (1058), Expect = 1.5e-111
Identity = 211/241 (87.55%), Postives = 219/241 (90.87%), Query Frame = 0
Query: 1 MAFLLQPPLFALFFLTSFSPSLSFPWNSSSFGKSSSNPSIDDMFLTSGESSGRPSRRKNI 60
MAFLLQPPLFALFFLTSFSPS S PWNSSSFGKS SNPS+DDM TS ESS RPS R+N
Sbjct: 1 MAFLLQPPLFALFFLTSFSPSWSLPWNSSSFGKSGSNPSLDDMLFTSSESSSRPS-RQNT 60
Query: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFGGHSNPCSGSSQRPPLWSNYFHGQA 120
IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASF GHSNPCSG S RPP +FHGQA
Sbjct: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPCSGVSHRPP----FFHGQA 120
Query: 121 SASREPQMTLNDYLTMPPSLRSYSGAVIDMAHFLPLHPLLAQPPPLPRTSTANSMNRQQN 180
SASREPQMTLNDYLTMPPSLRS+SGA IDMAHFLPLHPLLA+PPPLPRTST NSMN QQN
Sbjct: 121 SASREPQMTLNDYLTMPPSLRSHSGAAIDMAHFLPLHPLLARPPPLPRTSTPNSMNFQQN 180
Query: 181 QCVAGQRRQGNQVRWNNGGVREVGGRPASEQQPPQDVIDLNSEENDCSSDGSEGLDLTLS 240
Q VA QRRQGNQ+RWNNG VREVGG+PASEQQPPQDVIDL+SEENDCSSDGSEGLDLTLS
Sbjct: 181 QAVARQRRQGNQIRWNNGRVREVGGQPASEQQPPQDVIDLSSEENDCSSDGSEGLDLTLS 236
Query: 241 L 242
L
Sbjct: 241 L 236
BLAST of PI0008785 vs. NCBI nr
Match:
KGN56847.1 (hypothetical protein Csa_010766 [Cucumis sativus])
HSP 1 Score: 435.6 bits (1119), Expect = 2.7e-118
Identity = 219/241 (90.87%), Postives = 226/241 (93.78%), Query Frame = 0
Query: 1 MAFLLQPPLFALFFLTSFSPSLSFPWNSSSFGKSSSNPSIDDMFLTSGESSGRPSRRKNI 60
M FLLQPPLFALFFLTSFSPSLSFP NSSSFG+SSSNPS+++M TS ESSGRPSRRKN
Sbjct: 1 MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT 60
Query: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFGGHSNPCSGSSQRPPLWSNYFHGQA 120
IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASF GHSNP SG SQRPPLWSNYFHGQA
Sbjct: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPSSGISQRPPLWSNYFHGQA 120
Query: 121 SASREPQMTLNDYLTMPPSLRSYSGAVIDMAHFLPLHPLLAQPPPLPRTSTANSMNRQQN 180
SASREPQMTLNDYLTMPPSLRSYSGA IDMAHFLPLHPLLAQPPPLPRTSTAN MN QQN
Sbjct: 121 SASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRMNFQQN 180
Query: 181 QCVAGQRRQGNQVRWNNGGVREVGGRPASEQQPPQDVIDLNSEENDCSSDGSEGLDLTLS 240
Q VAG RRQGNQV+WNNGGVREVGG+PASE+QPPQDVIDLNSEENDCSSD SEGLDLTLS
Sbjct: 181 QAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGLDLTLS 240
Query: 241 L 242
L
Sbjct: 241 L 241
BLAST of PI0008785 vs. NCBI nr
Match:
KAA0049241.1 (hypothetical protein E6C27_scaffold171G004810 [Cucumis melo var. makuwa] >TYK17317.1 hypothetical protein E5676_scaffold434G001720 [Cucumis melo var. makuwa])
HSP 1 Score: 412.1 bits (1058), Expect = 3.2e-111
Identity = 211/241 (87.55%), Postives = 219/241 (90.87%), Query Frame = 0
Query: 1 MAFLLQPPLFALFFLTSFSPSLSFPWNSSSFGKSSSNPSIDDMFLTSGESSGRPSRRKNI 60
MAFLLQPPLFALFFLTSFSPS S PWNSSSFGKS SNPS+DDM TS ESS RPS R+N
Sbjct: 1 MAFLLQPPLFALFFLTSFSPSWSLPWNSSSFGKSGSNPSLDDMLFTSSESSSRPS-RQNT 60
Query: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFGGHSNPCSGSSQRPPLWSNYFHGQA 120
IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASF GHSNPCSG S RPP +FHGQA
Sbjct: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQNELASFRGHSNPCSGVSHRPP----FFHGQA 120
Query: 121 SASREPQMTLNDYLTMPPSLRSYSGAVIDMAHFLPLHPLLAQPPPLPRTSTANSMNRQQN 180
SASREPQMTLNDYLTMPPSLRS+SGA IDMAHFLPLHPLLA+PPPLPRTST NSMN QQN
Sbjct: 121 SASREPQMTLNDYLTMPPSLRSHSGAAIDMAHFLPLHPLLARPPPLPRTSTPNSMNFQQN 180
Query: 181 QCVAGQRRQGNQVRWNNGGVREVGGRPASEQQPPQDVIDLNSEENDCSSDGSEGLDLTLS 240
Q VA QRRQGNQ+RWNNG VREVGG+PASEQQPPQDVIDL+SEENDCSSDGSEGLDLTLS
Sbjct: 181 QAVARQRRQGNQIRWNNGRVREVGGQPASEQQPPQDVIDLSSEENDCSSDGSEGLDLTLS 236
Query: 241 L 242
L
Sbjct: 241 L 236
BLAST of PI0008785 vs. NCBI nr
Match:
KAG6597359.1 (hypothetical protein SDJN03_10539, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 307.0 bits (785), Expect = 1.4e-79
Identity = 164/240 (68.33%), Postives = 188/240 (78.33%), Query Frame = 0
Query: 9 LFALFFLTSFSPSLSFPWNSSSFGKSSSNPSIDDMFLTSGESSGRPSRRKNIIFGAPCGL 68
L LFFLT+FSPSL+FPW+SS + KS NPS++++ SGE+S RP RRK+ IFGAPCGL
Sbjct: 46 LCLLFFLTAFSPSLAFPWSSSPYEKSGWNPSLEELLSASGETSSRPPRRKSTIFGAPCGL 105
Query: 69 CGQVIFGSEALNHHYNYHFLQNELASFGGHSNPCSGSSQRPPLWSNYFHGQASASREPQM 128
CGQVIFGSEALNHHYNYHFLQN+LAS+G P S SSQRPP+W++YFHGQASASREPQ+
Sbjct: 106 CGQVIFGSEALNHHYNYHFLQNDLASYGSRLVPSSASSQRPPVWTDYFHGQASASREPQI 165
Query: 129 TLNDYLTMPP-----SLRSYSGAVIDMAHFLPLHPLLAQPPPLPRTSTANSMNRQQNQCV 188
TLN+ LTMPP SLRSY +DMAH LPLHPLLAQPPP R +TAN +N
Sbjct: 166 TLNNCLTMPPPRQPSSLRSYPSPTVDMAHLLPLHPLLAQPPPPRRITTANGVNED----A 225
Query: 189 AGQRRQGNQVRWNNGGVREVGGRPASEQ-QPPQDVIDLNS-EENDCSSDGSEGLDLTLSL 242
AGQR QGNQ + NNGG R R A+EQ QP Q+VIDLNS EENDCSSDGS+GLDLTLSL
Sbjct: 226 AGQRWQGNQNQRNNGGARTTSARSAAEQRQPRQEVIDLNSTEENDCSSDGSDGLDLTLSL 281
BLAST of PI0008785 vs. NCBI nr
Match:
KAG6582389.1 (hypothetical protein SDJN03_22391, partial [Cucurbita argyrosperma subsp. sororia] >KAG6582743.1 hypothetical protein SDJN03_22745, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 97.4 bits (241), Expect = 1.7e-16
Identity = 89/245 (36.33%), Postives = 106/245 (43.27%), Query Frame = 0
Query: 1 MAFLLQPPLFALFFLTSFSPSLSFPWNSSSFGKSSSNPSIDDMFLTSGESSGRPSRRKNI 60
MAFLL+ P SFPW SS F KSS NPS ++ TS ++S RP RKN
Sbjct: 1 MAFLLKAP-------------PSFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPC-RKNT 60
Query: 61 IFGAPCGLCGQVIFGSEALNHHYNYHFLQN-----ELASFGGHSNPCSGSSQRPPLWSNY 120
IFGAPCGLCGQ I SE LNHH L + + S + Q P S
Sbjct: 61 IFGAPCGLCGQGILVSETLNHHCTISCLMSLLLLGPIISLLRKLLAAAVMDQLFPWPSLC 120
Query: 121 FHGQASASREPQMTLNDYLTMPPSLRSYSGAVIDMAHFLPLHPLLAQPPPLPRTSTANSM 180
F S+ P TL + + +DMAH+LPLHPLLAQPPP T
Sbjct: 121 F------SKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPPPTVLTF----- 180
Query: 181 NRQQNQCVAGQRRQGNQVRWNNGGVREVGGRPASEQQPPQDVIDLNSEENDCSSDGSEGL 240
N++R G + EN+CSS GSE L
Sbjct: 181 ---------------NRIRLWRG-----------------------NNENNCSSGGSEDL 182
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L892 | 1.3e-118 | 90.87 | C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G134950 P... | [more] |
A0A5A7U6I9 | 1.5e-111 | 87.55 | C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
Match Name | E-value | Identity | Description | |
KGN56847.1 | 2.7e-118 | 90.87 | hypothetical protein Csa_010766 [Cucumis sativus] | [more] |
KAA0049241.1 | 3.2e-111 | 87.55 | hypothetical protein E6C27_scaffold171G004810 [Cucumis melo var. makuwa] >TYK173... | [more] |
KAG6597359.1 | 1.4e-79 | 68.33 | hypothetical protein SDJN03_10539, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG6582389.1 | 1.7e-16 | 36.33 | hypothetical protein SDJN03_22391, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |