PI0008628 (gene) Melon (PI 482460) v1

Overview


Name	PI0008628
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr01: 18560873 .. 18561979 (-)
RNA-Seq Expression	PI0008628
Synteny	PI0008628

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACAGGTCAATACTCCTGGGGTGGAGCGTGTTTGGCATGGTTGTATGCTATGCAAAATATTGAAGCGAGATGTTAGTGAAATTGTTGGTTTGTTGATACTTCTTCAAATATGGGCTTGGGAACAACTTCCCACAATGGCTTCACAACTTCAACATGTCAACGATCATCTACTACCTAGACGGGCATACAGTTCATAGTATGTTATTTTATTTTAATTTAAATTAACAATAGTTTTTATACTGACTGTGCAATATAATTAGTTCAAAATCTAAAATATTAGTTTATTAATGCAGATAGAGAAACCAAATTTGTGTAACTAGATCAACTGCTTATGTAATTAGTCAGTATAGGTACATGTTTGACCTTCTTCAGCGTGATCAGGTACGTAGATACTGAAACTTGATTTTTTTATACTTTAGTATTCCTTTATTTATTTAAAATGTAATATACAATATTTCAGATTATTTATTTAAAATGTGACGGTCAAGACATATGGCGGACCATCAGCCATCTCATATATTTTTCATATTGGAGAGTGATATTATCCTTATAGGTTGATCAAACAGTTTGGTTTTAAACAAGATAGTTCATTAGAATGCAATCTTCAGTCACTCCTTCACAACATTGATTTGAGAAATACGAATTGGTTAGACAAGGTCGCACATTTGGTAGTGTGATGGCAATCTCGAAGATTTATTGCAATGGGAGCTTTGATTCAGCAATTTGATAAAGACGTGACTCAAGAATACATCAACTGGTATAATAATATTACGAGGCTCTACATCACTCGATCGGCTGTAGCTATGGGTCATCTAGAACATAACTAAATATTTTATAATTACTTTAAATTATATACTAAATTAATTTTTTTTTGCAATTCACAGAGATCGAACAACATTAGATCGTGTGATATTGAAGATTATCAACAACAAGTTCTTGATATATCCAATAGTAATGAGAGGTACATGGAGGAGCTACATTATATGTACAATGTACCTATTGTAACTCCACCAGTTCATAAGGGATGTGCTCGAGTGGGAGAAGTTGAACTCAATGAGGTTTACCATAATGTGGAAAAGGTGCCTCCTATGACACAGACCTAG

mRNA sequence

ATGAGACAGGTCAATACTCCTGGGGTGGAGCGTGTTTGGCATGGTTGTATGCTATGCAAAATATTGAAGCGAGATGTTAGTGAAATTGTTGGTTTGTTGATACTTCTTCAAATATGGGCTTGGGAACAACTTCCCACAATGGCTTCACAACTTCAACATAGAAACCAAATTTGTGTAACTAGATCAACTGCTTATGTAATTAGTCAGTATAGGTACATGTTTGACCTTCTTCAGCGTGATCAGAGATCGAACAACATTAGATCGTGTGATATTGAAGATTATCAACAACAAGTTCTTGATATATCCAATAGTAATGAGAGGTACATGGAGGAGCTACATTATATGTACAATGTACCTATTGTAACTCCACCAGTTCATAAGGGATGTGCTCGAGTGGGAGAAGTTGAACTCAATGAGGTTTACCATAATGTGGAAAAGGTGCCTCCTATGACACAGACCTAG

Coding sequence (CDS)

ATGAGACAGGTCAATACTCCTGGGGTGGAGCGTGTTTGGCATGGTTGTATGCTATGCAAAATATTGAAGCGAGATGTTAGTGAAATTGTTGGTTTGTTGATACTTCTTCAAATATGGGCTTGGGAACAACTTCCCACAATGGCTTCACAACTTCAACATAGAAACCAAATTTGTGTAACTAGATCAACTGCTTATGTAATTAGTCAGTATAGGTACATGTTTGACCTTCTTCAGCGTGATCAGAGATCGAACAACATTAGATCGTGTGATATTGAAGATTATCAACAACAAGTTCTTGATATATCCAATAGTAATGAGAGGTACATGGAGGAGCTACATTATATGTACAATGTACCTATTGTAACTCCACCAGTTCATAAGGGATGTGCTCGAGTGGGAGAAGTTGAACTCAATGAGGTTTACCATAATGTGGAAAAGGTGCCTCCTATGACACAGACCTAG

Protein sequence

MRQVNTPGVERVWHGCMLCKILKRDVSEIVGLLILLQIWAWEQLPTMASQLQHRNQICVTRSTAYVISQYRYMFDLLQRDQRSNNIRSCDIEDYQQQVLDISNSNERYMEELHYMYNVPIVTPPVHKGCARVGEVELNEVYHNVEKVPPMTQT

Homology

[Close]

BLAST of PI0008628 vs. ExPASy TrEMBL
Match: A0A5A7V745 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001310 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.9e-32
Identity = 78/141 (55.32%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 13  WHGCMLCKILKRDVSEIVGLLILLQIWAWEQLPTMASQLQHRNQICVTRSTAYVISQYRY 72
           W    LCK  KRDV +IVG LILLQIWAWE+ PT+A QL H N                +
Sbjct: 292 WLYRQLCKASKRDVHDIVGPLILLQIWAWERFPTIAPQLTHAND---------------H 351

Query: 73  MFDLLQRDQRSNNIRSCDIEDYQQQVLDISNSNERYMEELHYMYNVPIVTPPVHKGCARV 132
           +        RSNN R  D+ +  QQVLDI N+NERYMEE+H MY++PIV P  H+GC RV
Sbjct: 352 LLPGRALGSRSNNARLRDVANDPQQVLDICNNNERYMEEIHNMYDLPIVPPLAHRGCVRV 411

Query: 133 GEVELNEVYHNVEKVPPMTQT 154
            EVEL+EVYHNVE+VPPMTQT
Sbjct: 412 EEVELDEVYHNVEEVPPMTQT 417

[Close]

BLAST of PI0008628 vs. ExPASy TrEMBL
Match: A0A5D3BTN9 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00320 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.9e-31
Identity = 77/141 (54.61%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 13  WHGCMLCKILKRDVSEIVGLLILLQIWAWEQLPTMASQLQHRNQICVTRSTAYVISQYRY 72
           W    LCK  KRDV +IVG LILLQIWAWE+ PT+A QL H N                +
Sbjct: 292 WLYRQLCKASKRDVHDIVGPLILLQIWAWERFPTIAPQLTHAND---------------H 351

Query: 73  MFDLLQRDQRSNNIRSCDIEDYQQQVLDISNSNERYMEELHYMYNVPIVTPPVHKGCARV 132
           +        RSNN R  D+ +  QQVLDI N+NERYMEE+H MY++PIV P  H+GC RV
Sbjct: 352 LLPGRALGSRSNNARLRDVANDPQQVLDICNNNERYMEEIHNMYDLPIVPPLAHRGCVRV 411

Query: 133 GEVELNEVYHNVEKVPPMTQT 154
            EVEL+EVYHNVE+VPP TQT
Sbjct: 412 EEVELDEVYHNVEEVPPTTQT 417

[Close]

BLAST of PI0008628 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.7e-29
Identity = 94/258 (36.43%), Postives = 111/258 (43.02%), Query Frame = 0


Query: 8   GVERVWHGCMLCKILKRDVSEIVGLLILLQIWAWEQLPTMASQLQH-------------- 67
           GV   W    LCK  KRDV +I G LILLQIWAWE+  T+A QL H              
Sbjct: 131 GVCLAWLYRQLCKASKRDVHDIAGQLILLQIWAWERFSTIAPQLTHTNDHLLSGRALGSR 190

Query: 68  -RNQICVTRSTAYVISQYRYMFDLLQRDQ------------------------------- 127
            R+Q CV RS  YV++QYRYMFDLLQRDQ                               
Sbjct: 191 WRDQFCVIRSATYVVNQYRYMFDLLQRDQIIWEPYKDVIDNLPNFCKNGQDTWRTISPLI 250

Query: 128 ------------------------------------------------------------ 154
                                                                       
Sbjct: 251 CFYIGEWHHPDRGCTFSSTMRSRRRFMTIEVSIQQFDMDVTQEYIHLYNNITRLYITRPG 310

[Close]

BLAST of PI0008628 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.0e-28
Identity = 86/214 (40.19%), Postives = 101/214 (47.20%), Query Frame = 0


Query: 27  SEIVGLLILLQIWAWEQLPTMASQLQHRN---------------QICVTRSTAYVISQYR 86
           S + GLLILLQIWAWE+  T+A QL H N               Q CVTR   +V+SQYR
Sbjct: 7   SVLAGLLILLQIWAWERFSTIAPQLTHANNHLLPGRALGSRWKDQFCVTRLATHVVSQYR 66

Query: 87  YMFDLLQRDQ-------------------------------------------------- 146
           YMFDLLQRDQ                                                  
Sbjct: 67  YMFDLLQRDQIIWEPYKNVIGNLPNFCKNGQDIWRTISPLICFHIGVSIQQFDIDVTQEY 126

Query: 147 ----------------------RSNNIRSCDIEDYQQQVLDISNSNERYMEELHYMYNVP 154
                                 RSNN R  D+ D  QQVL+I N+N+RYMEE+H MY++ 
Sbjct: 127 IHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLS 186

[Close]

BLAST of PI0008628 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.2e-26
Identity = 82/205 (40.00%), Postives = 99/205 (48.29%), Query Frame = 0


Query: 27  SEIVGLLILLQIWAWEQLPTMASQLQHRNQICV------TRSTAYVISQYRYMFDLLQRD 86
           S + GLLILLQIWAWE+  T+A QL H N   +      +R   +V+SQYRYMFDLLQRD
Sbjct: 7   SVLAGLLILLQIWAWERFSTIAPQLTHANNHLLPGRALGSRLATHVVSQYRYMFDLLQRD 66

Query: 87  Q----------------------------------------------------------- 146
           Q                                                           
Sbjct: 67  QIIWEPYKNVIGNLPNFCKNGQDIWRTISPLICFHIGVSIQQFDIDVTQEYIHWYNNITR 126

Query: 147 -------------RSNNIRSCDIEDYQQQVLDISNSNERYMEELHYMYNVPIVTPPVHKG 154
                        RSNN R  D+ D  QQVL+I N+N+RYMEE+H MY++ IV PPVH+G
Sbjct: 127 LYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRG 186

[Close]

BLAST of PI0008628 vs. NCBI nr
Match: KAA0064192.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 1.2e-31
Identity = 78/141 (55.32%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 13  WHGCMLCKILKRDVSEIVGLLILLQIWAWEQLPTMASQLQHRNQICVTRSTAYVISQYRY 72
           W    LCK  KRDV +IVG LILLQIWAWE+ PT+A QL H N                +
Sbjct: 292 WLYRQLCKASKRDVHDIVGPLILLQIWAWERFPTIAPQLTHAND---------------H 351

Query: 73  MFDLLQRDQRSNNIRSCDIEDYQQQVLDISNSNERYMEELHYMYNVPIVTPPVHKGCARV 132
           +        RSNN R  D+ +  QQVLDI N+NERYMEE+H MY++PIV P  H+GC RV
Sbjct: 352 LLPGRALGSRSNNARLRDVANDPQQVLDICNNNERYMEEIHNMYDLPIVPPLAHRGCVRV 411

Query: 133 GEVELNEVYHNVEKVPPMTQT 154
            EVEL+EVYHNVE+VPPMTQT
Sbjct: 412 EEVELDEVYHNVEEVPPMTQT 417

[Close]

BLAST of PI0008628 vs. NCBI nr
Match: TYK02837.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 6.0e-31
Identity = 77/141 (54.61%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 13  WHGCMLCKILKRDVSEIVGLLILLQIWAWEQLPTMASQLQHRNQICVTRSTAYVISQYRY 72
           W    LCK  KRDV +IVG LILLQIWAWE+ PT+A QL H N                +
Sbjct: 292 WLYRQLCKASKRDVHDIVGPLILLQIWAWERFPTIAPQLTHAND---------------H 351

Query: 73  MFDLLQRDQRSNNIRSCDIEDYQQQVLDISNSNERYMEELHYMYNVPIVTPPVHKGCARV 132
           +        RSNN R  D+ +  QQVLDI N+NERYMEE+H MY++PIV P  H+GC RV
Sbjct: 352 LLPGRALGSRSNNARLRDVANDPQQVLDICNNNERYMEEIHNMYDLPIVPPLAHRGCVRV 411

Query: 133 GEVELNEVYHNVEKVPPMTQT 154
            EVEL+EVYHNVE+VPP TQT
Sbjct: 412 EEVELDEVYHNVEEVPPTTQT 417

[Close]

BLAST of PI0008628 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 5.7e-29
Identity = 94/258 (36.43%), Postives = 111/258 (43.02%), Query Frame = 0


Query: 8   GVERVWHGCMLCKILKRDVSEIVGLLILLQIWAWEQLPTMASQLQH-------------- 67
           GV   W    LCK  KRDV +I G LILLQIWAWE+  T+A QL H              
Sbjct: 131 GVCLAWLYRQLCKASKRDVHDIAGQLILLQIWAWERFSTIAPQLTHTNDHLLSGRALGSR 190

Query: 68  -RNQICVTRSTAYVISQYRYMFDLLQRDQ------------------------------- 127
            R+Q CV RS  YV++QYRYMFDLLQRDQ                               
Sbjct: 191 WRDQFCVIRSATYVVNQYRYMFDLLQRDQIIWEPYKDVIDNLPNFCKNGQDTWRTISPLI 250

Query: 128 ------------------------------------------------------------ 154
                                                                       
Sbjct: 251 CFYIGEWHHPDRGCTFSSTMRSRRRFMTIEVSIQQFDMDVTQEYIHLYNNITRLYITRPG 310

[Close]

BLAST of PI0008628 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 6.2e-28
Identity = 86/214 (40.19%), Postives = 101/214 (47.20%), Query Frame = 0


Query: 27  SEIVGLLILLQIWAWEQLPTMASQLQHRN---------------QICVTRSTAYVISQYR 86
           S + GLLILLQIWAWE+  T+A QL H N               Q CVTR   +V+SQYR
Sbjct: 7   SVLAGLLILLQIWAWERFSTIAPQLTHANNHLLPGRALGSRWKDQFCVTRLATHVVSQYR 66

Query: 87  YMFDLLQRDQ-------------------------------------------------- 146
           YMFDLLQRDQ                                                  
Sbjct: 67  YMFDLLQRDQIIWEPYKNVIGNLPNFCKNGQDIWRTISPLICFHIGVSIQQFDIDVTQEY 126

Query: 147 ----------------------RSNNIRSCDIEDYQQQVLDISNSNERYMEELHYMYNVP 154
                                 RSNN R  D+ D  QQVL+I N+N+RYMEE+H MY++ 
Sbjct: 127 IHWYNNITRLYITRPRAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLS 186

[Close]

BLAST of PI0008628 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 4.5e-26
Identity = 82/205 (40.00%), Postives = 99/205 (48.29%), Query Frame = 0


Query: 27  SEIVGLLILLQIWAWEQLPTMASQLQHRNQICV------TRSTAYVISQYRYMFDLLQRD 86
           S + GLLILLQIWAWE+  T+A QL H N   +      +R   +V+SQYRYMFDLLQRD
Sbjct: 7   SVLAGLLILLQIWAWERFSTIAPQLTHANNHLLPGRALGSRLATHVVSQYRYMFDLLQRD 66

Query: 87  Q----------------------------------------------------------- 146
           Q                                                           
Sbjct: 67  QIIWEPYKNVIGNLPNFCKNGQDIWRTISPLICFHIGVSIQQFDIDVTQEYIHWYNNITR 126

Query: 147 -------------RSNNIRSCDIEDYQQQVLDISNSNERYMEELHYMYNVPIVTPPVHKG 154
                        RSNN R  D+ D  QQVL+I N+N+RYMEE+H MY++ IV PPVH+G
Sbjct: 127 LYITRPGAAVGHLRSNNARLRDVADDPQQVLNICNNNKRYMEEIHNMYDLSIVPPPVHRG 186

The following BLAST results are available for this feature:

BLAST of PI0008628 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008628 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V745	5.9e-32	55.32	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3BTN9	2.9e-31	54.61	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3DJV7	2.7e-29	36.43	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7TBF8	3.0e-28	40.19	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3CH23	2.2e-26	40.00	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of PI0008628 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064192.1	1.2e-31	55.32	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK02837.1	6.0e-31	54.61	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK23842.1	5.7e-29	36.43	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0038951.1	6.2e-28	40.19	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
TYK11193.1	4.5e-26	40.00	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of PI0008628 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 91..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008628.1	PI0008628.1	mRNA