PI0008565 (gene) Melon (PI 482460) v1

Overview


Name	PI0008565
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr12: 10304470 .. 10306956 (+)
RNA-Seq Expression	PI0008565
Synteny	PI0008565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCGTTGCCGGGGAGCGACGGTAAGTAAATTTGAAAAATTCTTTTAGGTTTGAATCTTTTCTTAGTTTCTTGATTCTATATTCAATTTCTAAAAAAAAATATTCTTTAAAACCAAAAAGAGAGTTATTTTGTGAAATCTTTTTCTCTCCCCTGCTTTGCATGTCCCGCTCTTCGAATCCTCACTTAGAATTTTTTGAAGATCTTAATAGGGAAGTGCGTAGAATTAGGAGAGAAATGAGAGAAGAAATTAACCAAAATATTCCTCAAGAAAATCAAGAGCCTACCTTTGAAAACCAAAACCTTGATAGACAAACCATGGGCCAAGTTAGAGAAAAAACTCTTAGAGAACTCTCTGATCCTGATGAAGACCAAAGACCCCTATGTATAGTGATTCCCCCAACAACTCAACCCTTCGAGCTTAAACCTGGACTAATCCATCTTTTACCAATCTATATGGGTAGCTCGGGTGAAGATCCTCATAAACACCTTAAGGATTTCCATATGGTTTGTGACTCTGAGACCACACGGAGTTTCTGAAGAACAACTTATCTTAGAGCCTTTCCATTTTCCTTAACTGATACAGCCAAGTGTTGGCTTTATTACTTAGAACCAGGATCCATCACAACTTGGGGAGGTCTCAAAAAGAAATTCCTAGAAAAATTCTTTCCCGCTTCTAGAGCAAATAACATTAGGAAGGAAATCTATGGAATTAGGCAAGCTTTTGAGGAGTCTTTATCTGAATACTGGGAGCGCTTTAAGGAGCTTTGCGCTAGCTTTCCCCACCATCATATTTCTGACCCTTCTTTAATACAGTATTTTTATTCTGGACTACTAGCCATGGATAGAAATACAGTAGATGCTGCAGCAGGTGGTGCTTTAGCTGATAAGACTCCTACTGAAGCAAGAGAGCTAATATCACGGATGGCTGAAAATTCACAGAATTTTGGCAACAGAGCATCCGAGCTCGACAATTCATTGACAAAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACATCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAATAATAATCAACAACCCATACAAGCAACTTCTACTTCAAATAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGTAAGCTACCAGCTCAGCCTGATCATGCAAATGTAAGTGCTATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGGTACCTTCTAACCCTGACCTTCTAATTGATGAAAACAAGAAAAAGGAAGAAAATAAAGAAAATAATGACTCTTCTCCTTCTTTAAAAGGTAAAAATAAAATTTCTGATTTTACCCCTTTTATACCTAACGGTCCTTTTCCTTCCAGATTAGTTCCTAAAAAGAAAGAAACACCGAAGGAAGAAGAACTGTTGGAGATGTTTAGGAAAGTGCAAATAAACCTACCTCTACTCGACGCAATTCAACAAGTCCCGAGGTATGCGAAGTTCTTAAAAGAGTTATGCACAAACAAAAGGAAAATCAAGGAGAAAGCAATGGTAAGTCACAACGTTTCTGCCTTACTTAAAACTTCAATTCCTGCGAAGCAAAACGACCCTGGTATGTTTTCTCTTCCTTGCATTATAGGAAATAGGCAAATTTCTAGTGCCATGTTAGATCTAGGAGCTTCTATTAATGTCATGCCGTATTCTGTTTTTAAAGATCTTGAATTAAATAACCTGCAAAAAACAAATGTATGCATTCAACTTGCTGATAGATCTTTCATATAACTGCTAGGAATAGTTGAAGATGTGTTAGTAAAAGTTGACAAACTTATATTTCCTGCGGATTTTTATATTCTTGAAATGAATGATGCATGCATGAAACCTTCCCATTCAATTCTTCTAGGTAGATCTTTCATAAAAACTGCCAAAGCTATCATAGATGTAGATAAAGGTTGCCTAATGTAGAATTCGATGGAGACATAGTGACATTCAATATTTTTGAATCCATGAAATTCCCTGATGAATGCTTCTCTGTATGCTCCTTGCAAATACATGAAAATTTTGAACAAATTCCTATAATAGAACAATTTGCCAACTTAGACTTAGAAGAAATAGAAGAAGACATTTGTTTGAATGAATTAAACAAAGAAGAAGAAATTGTAGAAGTAGAAAATGATGAAGAAATAAACTTTGAAGGAATTGATCCTAATTCGATTTCTTTTTCTCCACAGGAACCAGGGATCGAGCTTAA

mRNA sequence

ATGGCACCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACATCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAATAATAATCAACAACCCATACAAGCAACTTCTACTTCAAATAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGAACCAGGGATCGAGCTTAA

Coding sequence (CDS)

ATGGCACCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACATCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAATAATAATCAACAACCCATACAAGCAACTTCTACTTCAAATAATCAAGGTACAAATTTGGAGGATTTGGTAAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAACAAATGCAATAAGCAAGTTAGAAGGCAAAGGAACCAGGGATCGAGCTTAA

Protein sequence

MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKGTRDRA

Homology

[Close]

BLAST of PI0008565 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 9.3e-44
Identity = 83/111 (74.77%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN GWRDNPNLRWGN+NQ+
Sbjct: 152 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 211

Query: 69  PIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKG 120
             QA STS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKG
Sbjct: 212 HTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 262

[Close]

BLAST of PI0008565 vs. ExPASy TrEMBL
Match: A0A5A7UID2 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001450 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.3e-42
Identity = 80/108 (74.07%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 12  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQ 71
           +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDP GNTYN GWRDNPNLRWGN+NQ+  Q
Sbjct: 72  LKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPYGNTYNSGWRDNPNLRWGNDNQKHTQ 131

Query: 72  ATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKG 120
           A  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKG
Sbjct: 132 APPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 179

[Close]

BLAST of PI0008565 vs. ExPASy TrEMBL
Match: A0A5D3DCG3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold860G00100 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.0e-42
Identity = 80/111 (72.07%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN GWRDNPNLRWGN+NQ+
Sbjct: 11  GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69  PIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKG 120
             QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT  ISK++GKG
Sbjct: 71  HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGKG 121

[Close]

BLAST of PI0008565 vs. ExPASy TrEMBL
Match: A0A1S4E3R2 (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.0e-42
Identity = 80/111 (72.07%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN GWRDNPNLRWGN+NQ+
Sbjct: 11  GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69  PIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKG 120
             QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT  ISK++GKG
Sbjct: 71  HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGKG 121

[Close]

BLAST of PI0008565 vs. ExPASy TrEMBL
Match: E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.9e-42
Identity = 81/111 (72.97%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP GNTYN GWRDNPNLRWGN+NQ+
Sbjct: 67  GTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWGNDNQK 126

Query: 69  PIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKG 120
             QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKG
Sbjct: 127 HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 177

[Close]

BLAST of PI0008565 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-43
Identity = 83/111 (74.77%), Postives = 100/111 (90.09%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN GWRDNPNLRWGN+NQ+
Sbjct: 152 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 211

Query: 69  PIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKG 120
             QA STS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKG
Sbjct: 212 HTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 262

[Close]

BLAST of PI0008565 vs. NCBI nr
Match: KAA0053321.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 2.8e-42
Identity = 80/108 (74.07%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 12  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQPIQ 71
           +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDP GNTYN GWRDNPNLRWGN+NQ+  Q
Sbjct: 72  LKVTKCGVCGLVGHPNDKCPEVIEDVNIVRRYDPYGNTYNSGWRDNPNLRWGNDNQKHTQ 131

Query: 72  ATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKG 120
           A  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKG
Sbjct: 132 APPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 179

[Close]

BLAST of PI0008565 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 181.0 bits (458), Expect = 6.2e-42
Identity = 80/111 (72.07%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN GWRDNPNLRWGN+NQ+
Sbjct: 11  GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69  PIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKG 120
             QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT  ISK++GKG
Sbjct: 71  HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGKG 121

[Close]

BLAST of PI0008565 vs. NCBI nr
Match: KAA0051761.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 6.2e-42
Identity = 80/111 (72.07%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN GWRDNPNLRWGN+NQ+
Sbjct: 11  GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69  PIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKG 120
             QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT  ISK++GKG
Sbjct: 71  HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTVISKMDGKG 121

[Close]

BLAST of PI0008565 vs. NCBI nr
Match: ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 180.6 bits (457), Expect = 8.0e-42
Identity = 81/111 (72.97%), Postives = 98/111 (88.29%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNIGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP GNTYN GWRDNPNLRWGN+NQ+
Sbjct: 67  GTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWGNDNQK 126

Query: 69  PIQATSTSNNQGTNLEDLVKALATNTISFQNEMKQQMSQLTNAISKLEGKG 120
             QA  TS+NQGTNLED++KALATNT+SFQ EMKQQM+QLT AISK++GKG
Sbjct: 127 HTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 177

The following BLAST results are available for this feature:

BLAST of PI0008565 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRR8	9.3e-44	74.77	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7UID2	1.3e-42	74.07	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DCG3	3.0e-42	72.07	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S4E3R2	3.0e-42	72.07	uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=...	[more]
E5GBZ4	3.9e-42	72.97	Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of PI0008565 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047407.1	1.9e-43	74.77	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
KAA0053321.1	2.8e-42	74.07	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
XP_016902871.1	6.2e-42	72.07	PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]	[more]
KAA0051761.1	6.2e-42	72.07	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotranspos...	[more]
ADN33993.1	8.0e-42	72.97	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]

BLAST of PI0008565 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008565.1	PI0008565.1	mRNA