PI0008550 (gene) Melon (PI 482460) v1

Overview


Name	PI0008550
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Defensin-like protein
Location	chr05: 5819350 .. 5819694 (-)
RNA-Seq Expression	PI0008550
Synteny	PI0008550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCCAGTGGTGGGAAATAATAACATATGCAACGAAGGGTTAGGACCGTGTGGAACCAACTGCGATGCAAGATGCAAAGCAAAGCATAGCCCTAAAGAGAACCCTCAGGGCAGCTGTGATCGAATCGGGAACGTAGCGCTGTGTTCTTGCCTTTACAGTTGTAACGATTCGATGCCAAAGCCAAAGCCACCACTAAACTGCATCTCCGGACTAGGGTTGTGCACTGGAAAATGCAAGAGCGATTGTTGTAATGCTAAATGTAGGAGGCAGTACAAAGGAGGGGAGGGGTATTGTGACACAAACGTTGGAGTTCGTTTGTGCCAATGCAGCCATCCTTGCTAA

mRNA sequence

ATGACCCCAGTGGTGGGAAATAATAACATATGCAACGAAGGGTTAGGACCGTGTGGAACCAACTGCGATGCAAGATGCAAAGCAAAGCATAGCCCTAAAGAGAACCCTCAGGGCAGCTGTGATCGAATCGGGAACGTAGCGCTGTGTTCTTGCCTTTACAGTTGTAACGATTCGATGCCAAAGCCAAAGCCACCACTAAACTGCATCTCCGGACTAGGGTTGTGCACTGGAAAATGCAAGAGCGATTGTTGTAATGCTAAATGTAGGAGGCAGTACAAAGGAGGGGAGGGGTATTGTGACACAAACGTTGGAGTTCGTTTGTGCCAATGCAGCCATCCTTGCTAA

Coding sequence (CDS)

ATGACCCCAGTGGTGGGAAATAATAACATATGCAACGAAGGGTTAGGACCGTGTGGAACCAACTGCGATGCAAGATGCAAAGCAAAGCATAGCCCTAAAGAGAACCCTCAGGGCAGCTGTGATCGAATCGGGAACGTAGCGCTGTGTTCTTGCCTTTACAGTTGTAACGATTCGATGCCAAAGCCAAAGCCACCACTAAACTGCATCTCCGGACTAGGGTTGTGCACTGGAAAATGCAAGAGCGATTGTTGTAATGCTAAATGTAGGAGGCAGTACAAAGGAGGGGAGGGGTATTGTGACACAAACGTTGGAGTTCGTTTGTGCCAATGCAGCCATCCTTGCTAA

Protein sequence

MTPVVGNNNICNEGLGPCGTNCDARCKAKHSPKENPQGSCDRIGNVALCSCLYSCNDSMPKPKPPLNCISGLGLCTGKCKSDCCNAKCRRQYKGGEGYCDTNVGVRLCQCSHPC

Homology

[Close]

BLAST of PI0008550 vs. ExPASy Swiss-Prot
Match: P82773 (Defensin-like protein 182 OS=Arabidopsis thaliana OX=3702 GN=PDF3.2 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-23
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 11  CNEGLGPCGTNCDARCKAKHSPKENPQGSCDRIGNVALCSCLYSCNDSMPKPKPPLNCIS 70
           C +GLG C  NCD RCKAKH P  + + SCDR   V LC C Y C      P PP  C  
Sbjct: 29  CIDGLGYC-NNCDERCKAKHGP--SSESSCDRSVGVPLCKCYYECESPPSPPAPPKKCDG 88

Query: 71  GLGLCTGKCKSDCCNAKCRRQYKGGEGYCDTNVGVRLCQCSHPC 115
           G G+C+ +C+  CC+  C ++Y GG G+C+T      CQC +PC
Sbjct: 89  GAGICSQRCQGQCCDMNCAQKYIGGHGFCNTLGTFSFCQCEYPC 129

[Close]

BLAST of PI0008550 vs. ExPASy TrEMBL
Match: A0A5A7SMA4 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00230 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.3e-55
Identity = 97/115 (84.35%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MTPVVGNNNICNEGLGPCGTNCDARCKAKHSPKENPQGSCDRIG-NVALCSCLYSCNDSM 60
           MTPVVGN NIC+EGLGPCGTNCDARCKAKHSP ENPQGSCD+IG N++LC CLY+C    
Sbjct: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGSCDQIGSNLSLCYCLYTCGIPT 60

Query: 61  PKPKPPLNCISGLGLCTGKCKSDCCNAKCRRQYKGGEGYCDTNVGVRLCQCSHPC 115
           PKP PP NCISGLGLCTG+CKSDCCNAKCRRQY+GGEGYCDTNVGV LCQCSHPC
Sbjct: 61  PKPNPPQNCISGLGLCTGQCKSDCCNAKCRRQYQGGEGYCDTNVGVPLCQCSHPC 115

[Close]

BLAST of PI0008550 vs. ExPASy TrEMBL
Match: A0A0A0LMG4 (Defensin-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G060470 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.3e-54
Identity = 94/115 (81.74%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MTPVVGNNNICNEGLGPCGTNCDARCKAKHSPKENPQGSCDRIG-NVALCSCLYSCNDSM 60
           MTPVVGN +IC EGLGPCGTNCDARCKA+HSP ENPQGSCD+IG +++LC+CLYSC+ S 
Sbjct: 1   MTPVVGNKDICTEGLGPCGTNCDARCKAQHSPNENPQGSCDQIGSSISLCNCLYSCDRST 60

Query: 61  PKPKPPLNCISGLGLCTGKCKSDCCNAKCRRQYKGGEGYCDTNVGVRLCQCSHPC 115
           P PKPPLNCISGLGLCT +CKSDCCNAKC +QYKGGEG+CDTNVGV LCQCSHPC
Sbjct: 61  PMPKPPLNCISGLGLCTAQCKSDCCNAKCGQQYKGGEGFCDTNVGVSLCQCSHPC 115

[Close]

BLAST of PI0008550 vs. ExPASy TrEMBL
Match: A0A5D3CNI5 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18312G00010 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.3e-52
Identity = 94/115 (81.74%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MTPVVGNNNICNEGLGPCGTNCDARCKAKHSPKENPQGSCDRIG-NVALCSCLYSCNDSM 60
           MTPVVGN NIC+EGLGPCGTNCDARCKAKHSP ENPQG CD+IG N++LC CLY+C    
Sbjct: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPT 60

Query: 61  PKPKPPLNCISGLGLCTGKCKSDCCNAKCRRQYKGGEGYCDTNVGVRLCQCSHPC 115
            KP PP NCISGLGLCTG+CKSDCCNAKCR QYKGGEGYCDTNVGV LCQC+HPC
Sbjct: 61  LKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPC 115

[Close]

BLAST of PI0008550 vs. ExPASy TrEMBL
Match: A0A2I0JK99 (Defensin-like protein OS=Punica granatum OX=22663 GN=LOC116188723 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 11  CNEGLGPCGTNCDARCKAKHSPKENPQGSCDRIGNVALCSCLYSCNDSMPKPKPPLNCIS 70
           C+E LG CG +C+ARC A+H  +   QGSCD     +LC+C Y C    P   P   C  
Sbjct: 31  CSESLGLCGKDCEARCSARHPGQSGVQGSCDYSITPSLCTCYYDC--QQPPEPPQKQCTG 90

Query: 71  GLGLCTGKCKSDCCNAKCRRQYKGGEGYCDTNVGVRLCQCSHPC 115
           G GLC+ KC++DCCNA C  +YK G G+C+      LCQC + C
Sbjct: 91  GAGLCSVKCQNDCCNANCASKYKQGTGFCNMLPRTWLCQCQYAC 132

[Close]

BLAST of PI0008550 vs. ExPASy TrEMBL
Match: A0A218XR16 (Defensin-like protein OS=Punica granatum OX=22663 GN=CDL15_Pgr015997 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.0e-20
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 11  CNEGLGPCGTNCDARCKAKHSPKENPQGSCDRIGNVALCSCLYSCNDSMPKPKPPLNCIS 70
           C+E LG CG +C+ARC A+H  +   QGSCD     +LC+C Y C    P   P   C  
Sbjct: 30  CSESLGLCGKDCEARCSARHPGQSGVQGSCDYSITPSLCTCYYDC--QQPPEPPQKQCTG 89

Query: 71  GLGLCTGKCKSDCCNAKCRRQYKGGEGYCDTNVGVRLCQCSHPC 115
           G GLC+ KC++DCCNA C  +YK G G+C+      LCQC + C
Sbjct: 90  GAGLCSVKCQNDCCNANCASKYKQGTGFCNMLPRTWLCQCQYAC 131

[Close]

BLAST of PI0008550 vs. NCBI nr
Match: KAA0031758.1 (defensin-like protein 182 [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54
Identity = 97/115 (84.35%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MTPVVGNNNICNEGLGPCGTNCDARCKAKHSPKENPQGSCDRIG-NVALCSCLYSCNDSM 60
           MTPVVGN NIC+EGLGPCGTNCDARCKAKHSP ENPQGSCD+IG N++LC CLY+C    
Sbjct: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGSCDQIGSNLSLCYCLYTCGIPT 60

Query: 61  PKPKPPLNCISGLGLCTGKCKSDCCNAKCRRQYKGGEGYCDTNVGVRLCQCSHPC 115
           PKP PP NCISGLGLCTG+CKSDCCNAKCRRQY+GGEGYCDTNVGV LCQCSHPC
Sbjct: 61  PKPNPPQNCISGLGLCTGQCKSDCCNAKCRRQYQGGEGYCDTNVGVPLCQCSHPC 115

[Close]

BLAST of PI0008550 vs. NCBI nr
Match: XP_004148336.2 (defensin-like protein 182 [Cucumis sativus] >XP_031736571.1 defensin-like protein 182 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 94/115 (81.74%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MTPVVGNNNICNEGLGPCGTNCDARCKAKHSPKENPQGSCDRIG-NVALCSCLYSCNDSM 60
           MTPVVGN +IC EGLGPCGTNCDARCKA+HSP ENPQGSCD+IG +++LC+CLYSC+ S 
Sbjct: 17  MTPVVGNKDICTEGLGPCGTNCDARCKAQHSPNENPQGSCDQIGSSISLCNCLYSCDRST 76

Query: 61  PKPKPPLNCISGLGLCTGKCKSDCCNAKCRRQYKGGEGYCDTNVGVRLCQCSHPC 115
           P PKPPLNCISGLGLCT +CKSDCCNAKC +QYKGGEG+CDTNVGV LCQCSHPC
Sbjct: 77  PMPKPPLNCISGLGLCTAQCKSDCCNAKCGQQYKGGEGFCDTNVGVSLCQCSHPC 131

[Close]

BLAST of PI0008550 vs. NCBI nr
Match: KAE8651676.1 (hypothetical protein Csa_021158 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 94/115 (81.74%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MTPVVGNNNICNEGLGPCGTNCDARCKAKHSPKENPQGSCDRIG-NVALCSCLYSCNDSM 60
           MTPVVGN +IC EGLGPCGTNCDARCKA+HSP ENPQGSCD+IG +++LC+CLYSC+ S 
Sbjct: 21  MTPVVGNKDICTEGLGPCGTNCDARCKAQHSPNENPQGSCDQIGSSISLCNCLYSCDRST 80

Query: 61  PKPKPPLNCISGLGLCTGKCKSDCCNAKCRRQYKGGEGYCDTNVGVRLCQCSHPC 115
           P PKPPLNCISGLGLCT +CKSDCCNAKC +QYKGGEG+CDTNVGV LCQCSHPC
Sbjct: 81  PMPKPPLNCISGLGLCTAQCKSDCCNAKCGQQYKGGEGFCDTNVGVSLCQCSHPC 135

[Close]

BLAST of PI0008550 vs. NCBI nr
Match: TYK13447.1 (defensin-like protein 182 [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 2.7e-52
Identity = 94/115 (81.74%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MTPVVGNNNICNEGLGPCGTNCDARCKAKHSPKENPQGSCDRIG-NVALCSCLYSCNDSM 60
           MTPVVGN NIC+EGLGPCGTNCDARCKAKHSP ENPQG CD+IG N++LC CLY+C    
Sbjct: 1   MTPVVGNKNICSEGLGPCGTNCDARCKAKHSPIENPQGRCDQIGSNLSLCYCLYTCGIPT 60

Query: 61  PKPKPPLNCISGLGLCTGKCKSDCCNAKCRRQYKGGEGYCDTNVGVRLCQCSHPC 115
            KP PP NCISGLGLCTG+CKSDCCNAKCR QYKGGEGYCDTNVGV LCQC+HPC
Sbjct: 61  LKPNPPQNCISGLGLCTGQCKSDCCNAKCRSQYKGGEGYCDTNVGVPLCQCTHPC 115

[Close]

BLAST of PI0008550 vs. NCBI nr
Match: KAG7020813.1 (Defensin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.6 bits (405), Expect = 7.9e-36
Identity = 67/112 (59.82%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 3   PVVGNNNICNEGLGPCGTNCDARCKAKHSPKENPQGSCDRIGNVALCSCLYSCNDSMPKP 62
           P V ++++C EGLG CG++CD RCKA+H P ENPQG C+R+GN ALC CLYSC  +   P
Sbjct: 7   PEVKSDDLCAEGLGECGSDCDQRCKARHIPAENPQGRCNRLGNEALCECLYSCRMT---P 66

Query: 63  KPPLNCISGLGLCTGKCKSDCCNAKCRRQYKGGEGYCDTNVGVRLCQCSHPC 115
            P   C  GLG C+ KC +DCC+AKC  ++ GG+GYCDTNVG+RLCQCS+PC
Sbjct: 67  PPGKVCQDGLGQCSAKCNNDCCSAKCASKHNGGQGYCDTNVGIRLCQCSYPC 115

[Close]

BLAST of PI0008550 vs. TAIR 10
Match: AT4G30070.1 (low-molecular-weight cysteine-rich 59 )

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 47/104 (45.19%), Postives = 60/104 (57.69%), Query Frame = 0


Query: 11  CNEGLGPCGTNCDARCKAKHSPKENPQGSCDRIGNVALCSCLYSCNDSMPKPKPPLNCIS 70
           C +GLG C  NCD RCKAKH P  + + SCDR   V LC C Y C      P PP  C  
Sbjct: 29  CIDGLGYC-NNCDERCKAKHGP--SSESSCDRSVGVPLCKCYYECESPPSPPAPPKKCDG 88

Query: 71  GLGLCTGKCKSDCCNAKCRRQYKGGEGYCDTNVGVRLCQCSHPC 115
           G G+C+ +C+  CC+  C ++Y GG G+C+T      CQC +PC
Sbjct: 89  GAGICSQRCQGQCCDMNCAQKYIGGHGFCNTLGTFSFCQCEYPC 129

The following BLAST results are available for this feature:

BLAST of PI0008550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82773	1.6e-23	45.19	Defensin-like protein 182 OS=Arabidopsis thaliana OX=3702 GN=PDF3.2 PE=2 SV=1	[more]

BLAST of PI0008550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMA4	6.3e-55	84.35	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold50...	[more]
A0A0A0LMG4	5.3e-54	81.74	Defensin-like protein OS=Cucumis sativus OX=3659 GN=Csa_2G060470 PE=3 SV=1	[more]
A0A5D3CNI5	1.3e-52	81.74	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18...	[more]
A0A2I0JK99	1.0e-20	45.19	Defensin-like protein OS=Punica granatum OX=22663 GN=LOC116188723 PE=3 SV=1	[more]
A0A218XR16	1.0e-20	45.19	Defensin-like protein OS=Punica granatum OX=22663 GN=CDL15_Pgr015997 PE=3 SV=1	[more]

BLAST of PI0008550 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031758.1	1.3e-54	84.35	defensin-like protein 182 [Cucumis melo var. makuwa]	[more]
XP_004148336.2	1.1e-53	81.74	defensin-like protein 182 [Cucumis sativus] >XP_031736571.1 defensin-like protei...	[more]
KAE8651676.1	1.1e-53	81.74	hypothetical protein Csa_021158 [Cucumis sativus]	[more]
TYK13447.1	2.7e-52	81.74	defensin-like protein 182 [Cucumis melo var. makuwa]	[more]
KAG7020813.1	7.9e-36	59.82	Defensin-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of PI0008550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30070.1	1.1e-24	45.19	low-molecular-weight cysteine-rich 59	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR039641	Low-molecular-weight cysteine-rich protein	PANTHER	PTHR36788	DEFENSIN-LIKE PROTEIN 183	coord: 7..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008550.1	PI0008550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism
cellular_component	GO:0005576	extracellular region