PI0008396 (gene) Melon (PI 482460) v1

Overview


Name	PI0008396
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr11: 7379507 .. 7380146 (+)
RNA-Seq Expression	PI0008396
Synteny	PI0008396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGTACGTTATTAATATTTGCAAAACTAAATTGGTTCTTAAAAGTATTATAGTTTTTCATTAAATAGAATTTGTTTTATTTTTCAGCAGGAATAGCTCAATAGTACAACAGCGAAAATTTATACTACTTGGAAATCAAACCTAAATACAATACTAGTCGTAAATGATATAAGGTTTGTCTTAACTGAGGAACGTCCTCAAGCCCCAACCTCAGATGCTAGCCGAAATGTTCGGGAAGCATATGATCGATGGATTAAGGCCAATGAAAAGGCTCGTGTCTATATTCCTGCCAGCATGTCTGATGTTTTGGCAAAGAAATATGAATCCTTAGCTATCGCTAAAGAGATTATGGATTCATTGATGGAAATGTTTGGTCAGCCTTCATGGTCCCTCAGACACGAAGCAATTAAGCATATTTACACTAAGCGAATGAAAGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATAATGCACTTCAATATCGCTGAGGTAAATGGCGGTCCTATCGATGAGGCAAATCAAGTGAGCTCTATTTTACAATCTCTTCCGAAGAGTTTTGTACCATTTCAGACGAACGCGTTTCTGAATAAAATAGAATTCACTTTGACCACCCTTCTGAATGAGCTCTAG

mRNA sequence

ATGTTGGATGCTAGCCGAAATGTTCGGGAAGCATATGATCGATGGATTAAGGCCAATGAAAAGGCTCGTGTCTATATTCCTGCCAGCATGTCTGATGTTTTGGCAAAGAAATATGAATCCTTAGCTATCGCTAAAGAGATTATGGATTCATTGATGGAAATGTTTGGTCAGCCTTCATGGTCCCTCAGACACGAAGCAATTAAGCATATTTACACTAAGCGAATGAAAGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATAATGCACTTCAATATCGCTGAGGTAAATGGCGGTCCTATCGATGAGGCAAATCAAGTGAGCTCTATTTTACAATCTCTTCCGAAGAGTTTTGTACCATTTCAGACGAACGCGTTTCTGAATAAAATAGAATTCACTTTGACCACCCTTCTGAATGAGCTCTAG

Coding sequence (CDS)

ATGTTGGATGCTAGCCGAAATGTTCGGGAAGCATATGATCGATGGATTAAGGCCAATGAAAAGGCTCGTGTCTATATTCCTGCCAGCATGTCTGATGTTTTGGCAAAGAAATATGAATCCTTAGCTATCGCTAAAGAGATTATGGATTCATTGATGGAAATGTTTGGTCAGCCTTCATGGTCCCTCAGACACGAAGCAATTAAGCATATTTACACTAAGCGAATGAAAGAAGGGACCTCTGTTAGAGAACATGTCCTGGACATGATAATGCACTTCAATATCGCTGAGGTAAATGGCGGTCCTATCGATGAGGCAAATCAAGTGAGCTCTATTTTACAATCTCTTCCGAAGAGTTTTGTACCATTTCAGACGAACGCGTTTCTGAATAAAATAGAATTCACTTTGACCACCCTTCTGAATGAGCTCTAG

Protein sequence

MLDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPIDEANQVSSILQSLPKSFVPFQTNAFLNKIEFTLTTLLNEL

Homology

[Close]

BLAST of PI0008396 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.1e-62
Identity = 124/141 (87.94%), Postives = 133/141 (94.33%), Query Frame = 0


Query: 2   LDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWS 61
           L+A+R VREAYDRW+KAN+KARVYI ASM+DVLAKK++S+A AK IMDSL EMFGQPSWS
Sbjct: 49  LNANRTVREAYDRWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWS 108

Query: 62  LRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPIDEANQVSSILQSLPKSFVP 121
           LRHEAIKHIYTKRMKEGTSVREHVLDM+MHFNIAEVNGGPIDEANQVS ILQSLPKSFVP
Sbjct: 109 LRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVP 168

Query: 122 FQTNAFLNKIEFTLTTLLNEL 143
           FQTNA LNKIEF LTTLLNEL
Sbjct: 169 FQTNASLNKIEFNLTTLLNEL 189

[Close]

BLAST of PI0008396 vs. ExPASy TrEMBL
Match: A0A5D3CWX9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00120 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.8e-57
Identity = 118/141 (83.69%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 2   LDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWS 61
           L+A+R  +EAYDRWIKANEKARVYI ASMSDVLAKK+ESLA  KEIMDSL  +FGQP WS
Sbjct: 62  LNANRASQEAYDRWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKGIFGQPEWS 121

Query: 62  LRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPIDEANQVSSILQSLPKSFVP 121
           LRHEAIK+IYTKR KEGTSVREHVL+M+MHFNIAEVNGG IDEANQVS IL+SLPKSF+P
Sbjct: 122 LRHEAIKYIYTKRKKEGTSVREHVLNMMMHFNIAEVNGGVIDEANQVSFILESLPKSFIP 181

Query: 122 FQTNAFLNKIEFTLTTLLNEL 143
           FQTNA LNKIEF LTTLLNEL
Sbjct: 182 FQTNASLNKIEFNLTTLLNEL 202

[Close]

BLAST of PI0008396 vs. ExPASy TrEMBL
Match: A0A5A7TWX1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G001820 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.8e-57
Identity = 117/140 (83.57%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 3   DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSL 62
           +A+R  REAYDRWIKANEKARVYI ASMSDVLAKK+ESLA AKEIMDSL  MFGQP WSL
Sbjct: 50  NANRTSREAYDRWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSL 109

Query: 63  RHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPIDEANQVSSILQSLPKSFVPF 122
           RH+AIK+IYTKRMKEGTS+REHVL M++HFNIAEVNGG IDEANQVS IL+SLPKSF+PF
Sbjct: 110 RHKAIKYIYTKRMKEGTSIREHVLYMMIHFNIAEVNGGAIDEANQVSFILESLPKSFIPF 169

Query: 123 QTNAFLNKIEFTLTTLLNEL 143
           QTN  LNKIEF LTTLLNEL
Sbjct: 170 QTNVSLNKIEFNLTTLLNEL 189

[Close]

BLAST of PI0008396 vs. ExPASy TrEMBL
Match: A0A5D3DL59 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001080 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 6.4e-57
Identity = 116/140 (82.86%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 3   DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSL 62
           +A+R  R+AYDRWIKANEKARVYI ASMSDVLAKK+ESLA AKEIM+SL  MFGQP WSL
Sbjct: 50  NANRGSRKAYDRWIKANEKARVYILASMSDVLAKKHESLATAKEIMNSLKGMFGQPKWSL 109

Query: 63  RHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPIDEANQVSSILQSLPKSFVPF 122
           RHEAIK+IYTKRMKEGTS+REHVLDM++HFNI EVNGG IDEANQVS IL+SLPKSF+PF
Sbjct: 110 RHEAIKYIYTKRMKEGTSIREHVLDMMIHFNIVEVNGGAIDEANQVSLILESLPKSFIPF 169

Query: 123 QTNAFLNKIEFTLTTLLNEL 143
           Q NA LNKIEF LTTLLNEL
Sbjct: 170 QMNASLNKIEFNLTTLLNEL 189

[Close]

BLAST of PI0008396 vs. ExPASy TrEMBL
Match: A0A5D3BVA0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00330 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.2e-56
Identity = 117/140 (83.57%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 3   DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSL 62
           + +R  REAYDRWIKANEKARVYI ASM DVLAKK+ESLA AKEIMDSL  +FGQP WSL
Sbjct: 10  NVNRVSREAYDRWIKANEKARVYILASMLDVLAKKHESLATAKEIMDSLKGVFGQPEWSL 69

Query: 63  RHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPIDEANQVSSILQSLPKSFVPF 122
           RHEAIK+IYTKRMKEGTSVREHVLD +MHFNIAEVNGG ID ANQVS IL+SLPKSF+PF
Sbjct: 70  RHEAIKYIYTKRMKEGTSVREHVLDRMMHFNIAEVNGGAIDVANQVSFILESLPKSFIPF 129

Query: 123 QTNAFLNKIEFTLTTLLNEL 143
           QTNA LNKIEF LTTLLNEL
Sbjct: 130 QTNASLNKIEFNLTTLLNEL 149

[Close]

BLAST of PI0008396 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 246.9 bits (629), Expect = 1.0e-61
Identity = 124/141 (87.94%), Postives = 133/141 (94.33%), Query Frame = 0


Query: 2   LDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWS 61
           L+A+R VREAYDRW+KAN+KARVYI ASM+DVLAKK++S+A AK IMDSL EMFGQPSWS
Sbjct: 49  LNANRTVREAYDRWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLREMFGQPSWS 108

Query: 62  LRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPIDEANQVSSILQSLPKSFVP 121
           LRHEAIKHIYTKRMKEGTSVREHVLDM+MHFNIAEVNGGPIDEANQVS ILQSLPKSFVP
Sbjct: 109 LRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNIAEVNGGPIDEANQVSFILQSLPKSFVP 168

Query: 122 FQTNAFLNKIEFTLTTLLNEL 143
           FQTNA LNKIEF LTTLLNEL
Sbjct: 169 FQTNASLNKIEFNLTTLLNEL 189

[Close]

BLAST of PI0008396 vs. NCBI nr
Match: XP_038891685.1 (uncharacterized protein LOC120081079 [Benincasa hispida])

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 120/140 (85.71%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 3   DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSL 62
           +A+R VREAYDRW+KANEKA VYI ASMSDVLAKK+ESLA AKEI+DSL EMFGQ SWSL
Sbjct: 50  NANRTVREAYDRWVKANEKACVYILASMSDVLAKKHESLATAKEIIDSLREMFGQLSWSL 109

Query: 63  RHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPIDEANQVSSILQSLPKSFVPF 122
           RHEAIKHIYTKRMKEGTSVREHVLDM+M+FNIA+VNGGPIDEANQVS ILQSLPKSF+PF
Sbjct: 110 RHEAIKHIYTKRMKEGTSVREHVLDMMMYFNIAKVNGGPIDEANQVSFILQSLPKSFIPF 169

Query: 123 QTNAFLNKIEFTLTTLLNEL 143
           +TN  LNKIEF LTTLLNEL
Sbjct: 170 ETNVSLNKIEFNLTTLLNEL 189

[Close]

BLAST of PI0008396 vs. NCBI nr
Match: XP_038882326.1 (uncharacterized protein LOC120073576 [Benincasa hispida])

HSP 1 Score: 231.5 bits (589), Expect = 4.6e-57
Identity = 115/140 (82.14%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 3   DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSL 62
           +A+R +REAYDRWIKANEKARVYI A+MSDVLAKK+ESLA  KEI+DSL EMFGQPSWSL
Sbjct: 50  NANRTIREAYDRWIKANEKARVYILANMSDVLAKKHESLATTKEIIDSLREMFGQPSWSL 109

Query: 63  RHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPIDEANQVSSILQSLPKSFVPF 122
           RHEAIKHIYTK MKEGTSVREH+LDM+M+FNIA+VNG PIDEANQVS ILQ +PKSF+PF
Sbjct: 110 RHEAIKHIYTKWMKEGTSVREHILDMMMYFNIAKVNGRPIDEANQVSFILQFIPKSFIPF 169

Query: 123 QTNAFLNKIEFTLTTLLNEL 143
           +TNA LNKIEF  TTLLNEL
Sbjct: 170 ETNASLNKIEFNFTTLLNEL 189

[Close]

BLAST of PI0008396 vs. NCBI nr
Match: KAA0048103.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 230.7 bits (587), Expect = 7.8e-57
Identity = 117/140 (83.57%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 3   DASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWSL 62
           +A+R  REAYDRWIKANEKARVYI ASMSDVLAKK+ESLA AKEIMDSL  MFGQP WSL
Sbjct: 50  NANRTSREAYDRWIKANEKARVYILASMSDVLAKKHESLATAKEIMDSLKGMFGQPKWSL 109

Query: 63  RHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPIDEANQVSSILQSLPKSFVPF 122
           RH+AIK+IYTKRMKEGTS+REHVL M++HFNIAEVNGG IDEANQVS IL+SLPKSF+PF
Sbjct: 110 RHKAIKYIYTKRMKEGTSIREHVLYMMIHFNIAEVNGGAIDEANQVSFILESLPKSFIPF 169

Query: 123 QTNAFLNKIEFTLTTLLNEL 143
           QTN  LNKIEF LTTLLNEL
Sbjct: 170 QTNVSLNKIEFNLTTLLNEL 189

[Close]

BLAST of PI0008396 vs. NCBI nr
Match: KAA0042320.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK15444.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 230.7 bits (587), Expect = 7.8e-57
Identity = 118/141 (83.69%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 2   LDASRNVREAYDRWIKANEKARVYIPASMSDVLAKKYESLAIAKEIMDSLMEMFGQPSWS 61
           L+A+R  +EAYDRWIKANEKARVYI ASMSDVLAKK+ESLA  KEIMDSL  +FGQP WS
Sbjct: 62  LNANRASQEAYDRWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKGIFGQPEWS 121

Query: 62  LRHEAIKHIYTKRMKEGTSVREHVLDMIMHFNIAEVNGGPIDEANQVSSILQSLPKSFVP 121
           LRHEAIK+IYTKR KEGTSVREHVL+M+MHFNIAEVNGG IDEANQVS IL+SLPKSF+P
Sbjct: 122 LRHEAIKYIYTKRKKEGTSVREHVLNMMMHFNIAEVNGGVIDEANQVSFILESLPKSFIP 181

Query: 122 FQTNAFLNKIEFTLTTLLNEL 143
           FQTNA LNKIEF LTTLLNEL
Sbjct: 182 FQTNASLNKIEFNLTTLLNEL 202

The following BLAST results are available for this feature:

BLAST of PI0008396 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	5.1e-62	87.94	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5D3CWX9	3.8e-57	83.69	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G0012...	[more]
A0A5A7TWX1	3.8e-57	83.57	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G0018...	[more]
A0A5D3DL59	6.4e-57	82.86	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G0010...	[more]
A0A5D3BVA0	3.2e-56	83.57	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G0033...	[more]

BLAST of PI0008396 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	1.0e-61	87.94	gag/pol protein, partial [Bryonia dioica]	[more]
XP_038891685.1	1.1e-58	85.71	uncharacterized protein LOC120081079 [Benincasa hispida]	[more]
XP_038882326.1	4.6e-57	82.14	uncharacterized protein LOC120073576 [Benincasa hispida]	[more]
KAA0048103.1	7.8e-57	83.57	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0042320.1	7.8e-57	83.69	gag/pol protein [Cucumis melo var. makuwa] >TYK15444.1 gag/pol protein [Cucumis ...	[more]

BLAST of PI0008396 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 15..142 e-value: 7.3E-18 score: 64.7
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 5..141
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 5..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008396.1	PI0008396.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding