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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGACAAGCGAGAGTACGAGGAGTCAAGAGATTTGGATGCCGCTTGATTTTGGTTTTTGGAAGTTCAACTCGGATGCTTCTTGGAATGATGTTGAGGAGATCAGTAGCACTAGTTGGGTTGTTCGTGGTTCCATTGGAGCCTTTATCCTGGCATGA mRNA sequence ATGACAAGCGAGAGTACGAGGAGTCAAGAGATTTGGATGCCGCTTGATTTTGGTTTTTGGAAGTTCAACTCGGATGCTTCTTGGAATGATGTTGAGGAGATCAGTAGCACTAGTTGGGTTGTTCGTGGTTCCATTGGAGCCTTTATCCTGGCATGA Coding sequence (CDS) ATGACAAGCGAGAGTACGAGGAGTCAAGAGATTTGGATGCCGCTTGATTTTGGTTTTTGGAAGTTCAACTCGGATGCTTCTTGGAATGATGTTGAGGAGATCAGTAGCACTAGTTGGGTTGTTCGTGGTTCCATTGGAGCCTTTATCCTGGCATGA Protein sequence MTSESTRSQEIWMPLDFGFWKFNSDASWNDVEEISSTSWVVRGSIGAFILA
Homology
BLAST of PI0008256 vs. ExPASy TrEMBL
Match: A0A5D3E6P6 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005870 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 4.1e-14 Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 Query: 1 MTSESTRSQEIWMPLDFGFWKFNSDASWNDVEEISSTSWVVRGSIGAFILA 52 MTSESTRSQ+IWM GFW+FN DASWNDVEEIS TSWVVR S GAFILA Sbjct: 1 MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEISGTSWVVRDSAGAFILA 51
BLAST of PI0008256 vs. ExPASy TrEMBL
Match: A0A0A0LGW5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G890000 PE=4 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 2.4e-06 Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0 Query: 1 MTSESTRSQEIWMPLDFGFWKFNSDASWNDVEEIS 36 MTSES RSQEIWM + FWKFN DASWNDVEEI+ Sbjct: 3 MTSESPRSQEIWMASNADFWKFNLDASWNDVEEIT 37
BLAST of PI0008256 vs. NCBI nr
Match: KAA0038679.1 (hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK31290.1 hypothetical protein E5676_scaffold455G005870 [Cucumis melo var. makuwa]) HSP 1 Score: 86.3 bits (212), Expect = 8.5e-14 Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 0 Query: 1 MTSESTRSQEIWMPLDFGFWKFNSDASWNDVEEISSTSWVVRGSIGAFILA 52 MTSESTRSQ+IWM GFW+FN DASWNDVEEIS TSWVVR S GAFILA Sbjct: 1 MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEISGTSWVVRDSAGAFILA 51
BLAST of PI0008256 vs. NCBI nr
Match: KGN60244.1 (hypothetical protein Csa_002227 [Cucumis sativus]) HSP 1 Score: 60.5 bits (145), Expect = 5.0e-06 Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0 Query: 1 MTSESTRSQEIWMPLDFGFWKFNSDASWNDVEEIS 36 MTSES RSQEIWM + FWKFN DASWNDVEEI+ Sbjct: 3 MTSESPRSQEIWMASNADFWKFNLDASWNDVEEIT 37
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3E6P6 | 4.1e-14 | 80.39 | RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A0A0LGW5 | 2.4e-06 | 77.14 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G890000 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAA0038679.1 | 8.5e-14 | 80.39 | hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK3129... | [more] |
KGN60244.1 | 5.0e-06 | 77.14 | hypothetical protein Csa_002227 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0090502 |
RNA phosphodiester bond hydrolysis, endonucleolytic |
molecular_function |
GO:0003676 |
nucleic acid binding |
molecular_function |
GO:0004523 |
RNA-DNA hybrid ribonuclease activity |
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