PI0008223 (gene) Melon (PI 482460) v1

Overview


Name	PI0008223
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol
Location	chr02: 13335395 .. 13336015 (-)
RNA-Seq Expression	PI0008223
Synteny	PI0008223

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGACCTCTGCGATACCGAATTTGAAGATTTCAGAGAGTCAGAGGATGCGACGTTGGCACCTGAGTCGCAAACCACAGTCTTTTTTGATGAGCCGGTTGATGACCCAACTCCCTAGGAAAATCAAACAACCCTTGTGGAAGCTGGTGAGACGCGGGCTCCTTTGCCGCCTAAGCAAACTGAAAATCCACAACACTATGCAGCAGAAGAGAATGACGATGAAGATTTCTACAAGTACATCAATGAGGCAGTCGCCAAGCCAATGATGGATGGACTTGAAGAAGTGTTCCAAACCCAAGCCAATCTGCAAGACCTTGCGACGAAACATGAGAAGCAGATTGTGGACTTGGAAACAAAATTGAACAACTACCATCAATTGCAGAAAGACCAGCTCGCATCTGAAGTAGCGAGCCTGAAGAAACAAAATAAGGCGATGGTGAGTTTGATAAAAAAGGCTTCCTCGTGGTCTGACAGGCAATACAAATCTTTAATGAACTACATCCACGCGGCCATCACAAGCCTCGTGCCTAAGCCTGCCATTCCGCCTAAATTCGAAAACCCCCTTTCTAATGATGAAGTGGACGCCGCAGCAGGACCTTCTGACGCGGCTATAAATTAA

mRNA sequence

ATGCAAGACCTCTGCGATACCGAATTTGAAGATTTCAGAGAGTCAGAGGATGCGACGTTGGCACCTGAGTCGCAAACCACAGTCTTTTTTGATGAGCCGGAAAATCAAACAACCCTTGTGGAAGCTGGTGAGACGCGGGCTCCTTTGCCGCCTAAGCAAACTGAAAATCCACAACACTATGCAGCAGAAGAGAATGACGATGAAGATTTCTACAAGTACATCAATGAGGCAGTCGCCAAGCCAATGATGGATGGACTTGAAGAAGTGTTCCAAACCCAAGCCAATCTGCAAGACCTTGCGACGAAACATGAGAAGCAGATTGTGGACTTGGAAACAAAATTGAACAACTACCATCAATTGCAGAAAGACCAGCTCGCATCTGAAGTAGCGAGCCTGAAGAAACAAAATAAGGCGATGGTGAGTTTGATAAAAAAGGCTTCCTCGTGGTCTGACAGGCAATACAAATCTTTAATGAACTACATCCACGCGGCCATCACAAGCCTCGTGCCTAAGCCTGCCATTCCGCCTAAATTCGAAAACCCCCTTTCTAATGATGAAGTGGACGCCGCAGCAGGACCTTCTGACGCGGCTATAAATTAA

Coding sequence (CDS)

ATGCAAGACCTCTGCGATACCGAATTTGAAGATTTCAGAGAGTCAGAGGATGCGACGTTGGCACCTGAGTCGCAAACCACAGTCTTTTTTGATGAGCCGGAAAATCAAACAACCCTTGTGGAAGCTGGTGAGACGCGGGCTCCTTTGCCGCCTAAGCAAACTGAAAATCCACAACACTATGCAGCAGAAGAGAATGACGATGAAGATTTCTACAAGTACATCAATGAGGCAGTCGCCAAGCCAATGATGGATGGACTTGAAGAAGTGTTCCAAACCCAAGCCAATCTGCAAGACCTTGCGACGAAACATGAGAAGCAGATTGTGGACTTGGAAACAAAATTGAACAACTACCATCAATTGCAGAAAGACCAGCTCGCATCTGAAGTAGCGAGCCTGAAGAAACAAAATAAGGCGATGGTGAGTTTGATAAAAAAGGCTTCCTCGTGGTCTGACAGGCAATACAAATCTTTAATGAACTACATCCACGCGGCCATCACAAGCCTCGTGCCTAAGCCTGCCATTCCGCCTAAATTCGAAAACCCCCTTTCTAATGATGAAGTGGACGCCGCAGCAGGACCTTCTGACGCGGCTATAAATTAA

Protein sequence

MQDLCDTEFEDFRESEDATLAPESQTTVFFDEPENQTTLVEAGETRAPLPPKQTENPQHYAAEENDDEDFYKYINEAVAKPMMDGLEEVFQTQANLQDLATKHEKQIVDLETKLNNYHQLQKDQLASEVASLKKQNKAMVSLIKKASSWSDRQYKSLMNYIHAAITSLVPKPAIPPKFENPLSNDEVDAAAGPSDAAIN

Homology

[Close]

BLAST of PI0008223 vs. ExPASy TrEMBL
Match: A0A5A7U0L9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00960 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 43  GETRAPLPPKQTENPQHYAAEENDDED-FYKYINEAVAKPMMDGLEEVFQTQANLQDLAT 102
           GET APLP KQ  N Q  AA E+D+ED ++K+I +   KP+MDG ++VFQ Q +LQ+   
Sbjct: 12  GETHAPLPLKQINNQQKNAAGESDNEDHYFKFIGDTFGKPVMDGFKDVFQNQVDLQECTW 71

Query: 103 KHEKQIVDLETKLNNYHQ 120
           +HEKQI DLE K++N +Q
Sbjct: 72  RHEKQIQDLELKIDNCNQ 89

[Close]

BLAST of PI0008223 vs. ExPASy TrEMBL
Match: A0A5D3DS12 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00130 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.8e-07
Identity = 38/89 (42.70%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 67  DEDFYKYINEAVAKPMMDGLEEVFQTQANLQDLATKHEKQIVDLETKLNN---YHQLQKD 126
           D++++K+I     KPM DG E++FQ QANLQ+   + +KQ+ +LE +++N    HQ Q D
Sbjct: 11  DDEYFKFIKNNFGKPMRDGFEDIFQCQANLQE-GMRSQKQLQNLELRIDNKDLRHQAQLD 70

Query: 127 QLASEVASLKKQNKAMVSLIKKASSWSDR 153
            +  ++ SLK QN+A+ +LIK+ASS ++R
Sbjct: 71  IIEVDI-SLKTQNRALNTLIKRASSQTNR 97

[Close]

BLAST of PI0008223 vs. ExPASy TrEMBL
Match: A0A5D3DHY1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003250 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 34  ENQTTLVEAGETRAPLPPKQTENP-------QHYAAEENDDED-FYKYINEAVAKPMMDG 93
           E +TT   A +T  P  PKQT+ P       +  A ++ DD+D F+K+I++ V KP+  G
Sbjct: 7   EKKTTSEVAKKTSLPSSPKQTQKPTTQNTKQKEAARDDKDDKDYFFKFIDDQVCKPLGSG 66

Query: 94  LEEVFQTQANLQDLATKHEKQIVDLETKLNN 117
            ++VFQ Q+NLQ++  +H+KQ   LE K++N
Sbjct: 67  FQDVFQCQSNLQEMQYRHKKQSKGLELKVDN 97

[Close]

BLAST of PI0008223 vs. ExPASy TrEMBL
Match: A0A5D3E1H0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2208G00350 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-06
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 13  RESEDAT-----LAPESQTTVFFDEP---ENQTTLVEAGETRAPLPPKQTENP------Q 72
           +ESE+ T     L+ ++      D+P     Q    +A +TR P PPKQ+  P      Q
Sbjct: 71  KESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQ 130

Query: 73  HYAAEENDDED--FYKYINEAVAKPMMDGLEEVFQTQANLQDLATKHEKQIVDLETK 114
             A  ++DD+D  ++K+INE V++P+  G E+VFQ QANLQ+   +++K + DLE K
Sbjct: 131 KEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQKPLQDLELK 187

[Close]

BLAST of PI0008223 vs. ExPASy TrEMBL
Match: A0A5A7TJU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00130 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-06
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 13  RESEDAT-----LAPESQTTVFFDEP---ENQTTLVEAGETRAPLPPKQTENP------Q 72
           +ESE+ T     L+ ++      D+P     Q    +A +TR P PPKQ+  P      Q
Sbjct: 116 KESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQ 175

Query: 73  HYAAEENDDED--FYKYINEAVAKPMMDGLEEVFQTQANLQDLATKHEKQIVDLETK 114
             A  ++DD+D  ++K+INE V++P+  G E+VFQ QANLQ+   +++K + DLE K
Sbjct: 176 KEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQKPLQDLELK 232

[Close]

BLAST of PI0008223 vs. NCBI nr
Match: KAA0047757.1 (hypothetical protein E6C27_scaffold1059G00180 [Cucumis melo var. makuwa] >TYK02391.1 hypothetical protein E5676_scaffold155G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-11
Identity = 41/78 (52.56%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 43  GETRAPLPPKQTENPQHYAAEENDDED-FYKYINEAVAKPMMDGLEEVFQTQANLQDLAT 102
           GET APLP KQ  N Q  AA E+D+ED ++K+I +   KP+MDG ++VFQ Q +LQ+   
Sbjct: 12  GETHAPLPLKQINNQQKNAAGESDNEDHYFKFIGDTFGKPVMDGFKDVFQNQVDLQECTW 71

Query: 103 KHEKQIVDLETKLNNYHQ 120
           +HEKQI DLE K++N +Q
Sbjct: 72  RHEKQIQDLELKIDNCNQ 89

[Close]

BLAST of PI0008223 vs. NCBI nr
Match: TYK26456.1 (hypothetical protein E5676_scaffold313G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 7.9e-07
Identity = 38/89 (42.70%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 67  DEDFYKYINEAVAKPMMDGLEEVFQTQANLQDLATKHEKQIVDLETKLNN---YHQLQKD 126
           D++++K+I     KPM DG E++FQ QANLQ+   + +KQ+ +LE +++N    HQ Q D
Sbjct: 11  DDEYFKFIKNNFGKPMRDGFEDIFQCQANLQE-GMRSQKQLQNLELRIDNKDLRHQAQLD 70

Query: 127 QLASEVASLKKQNKAMVSLIKKASSWSDR 153
            +  ++ SLK QN+A+ +LIK+ASS ++R
Sbjct: 71  IIEVDI-SLKTQNRALNTLIKRASSQTNR 97

[Close]

BLAST of PI0008223 vs. NCBI nr
Match: TYK23271.1 (hypothetical protein E5676_scaffold142G003250 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-06
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 34  ENQTTLVEAGETRAPLPPKQTENP-------QHYAAEENDDED-FYKYINEAVAKPMMDG 93
           E +TT   A +T  P  PKQT+ P       +  A ++ DD+D F+K+I++ V KP+  G
Sbjct: 7   EKKTTSEVAKKTSLPSSPKQTQKPTTQNTKQKEAARDDKDDKDYFFKFIDDQVCKPLGSG 66

Query: 94  LEEVFQTQANLQDLATKHEKQIVDLETKLNN 117
            ++VFQ Q+NLQ++  +H+KQ   LE K++N
Sbjct: 67  FQDVFQCQSNLQEMQYRHKKQSKGLELKVDN 97

[Close]

BLAST of PI0008223 vs. NCBI nr
Match: TYK29776.1 (hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 8.7e-06
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 13  RESEDAT-----LAPESQTTVFFDEP---ENQTTLVEAGETRAPLPPKQTENP------Q 72
           +ESE+ T     L+ ++      D+P     Q    +A +TR P PPKQ+  P      Q
Sbjct: 71  KESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQ 130

Query: 73  HYAAEENDDED--FYKYINEAVAKPMMDGLEEVFQTQANLQDLATKHEKQIVDLETK 114
             A  ++DD+D  ++K+INE V++P+  G E+VFQ QANLQ+   +++K + DLE K
Sbjct: 131 KEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQKPLQDLELK 187

[Close]

BLAST of PI0008223 vs. NCBI nr
Match: KAA0043584.1 (hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 8.7e-06
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 0


Query: 13  RESEDAT-----LAPESQTTVFFDEP---ENQTTLVEAGETRAPLPPKQTENP------Q 72
           +ESE+ T     L+ ++      D+P     Q    +A +TR P PPKQ+  P      Q
Sbjct: 116 KESENTTLTLVVLSNKNILEKAIDDPLQKRKQVDSEDASKTRQPSPPKQSPKPTMQDTKQ 175

Query: 73  HYAAEENDDED--FYKYINEAVAKPMMDGLEEVFQTQANLQDLATKHEKQIVDLETK 114
             A  ++DD+D  ++K+INE V++P+  G E+VFQ QANLQ+   +++K + DLE K
Sbjct: 176 KEAIRDDDDDDEYYFKFINENVSQPLRYGFEDVFQCQANLQETQLQNQKPLQDLELK 232

The following BLAST results are available for this feature:

BLAST of PI0008223 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008223 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0L9	1.5e-11	52.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DS12	3.8e-07	42.70	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DHY1	1.5e-06	39.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E1H0	4.2e-06	36.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TJU0	4.2e-06	36.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0008223 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047757.1	3.1e-11	52.56	hypothetical protein E6C27_scaffold1059G00180 [Cucumis melo var. makuwa] >TYK023...	[more]
TYK26456.1	7.9e-07	42.70	hypothetical protein E5676_scaffold313G00130 [Cucumis melo var. makuwa]	[more]
TYK23271.1	3.0e-06	39.56	hypothetical protein E5676_scaffold142G003250 [Cucumis melo var. makuwa]	[more]
TYK29776.1	8.7e-06	36.75	hypothetical protein E5676_scaffold2208G00350 [Cucumis melo var. makuwa]	[more]
KAA0043584.1	8.7e-06	36.75	hypothetical protein E6C27_scaffold320G00130 [Cucumis melo var. makuwa]	[more]

BLAST of PI0008223 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 93..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0008223.1	PI0008223.1	mRNA