PI0007998 (gene) Melon (PI 482460) v1

Overview
NamePI0007998
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposable element Tf2
Locationchr01: 18909332 .. 18909661 (-)
RNA-Seq ExpressionPI0007998
SyntenyPI0007998
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGTCAAAAATCTCAAAATTAAATGGTGGGATAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTTCAAGATATCGATCAGAAAAAGAACGCAGAGTTCCTGAACGATAAATCAAAACTTTTAGCAGCATTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATGCCTCTACAAGCTCAAAATCAGCGTCTTCCTCCATACAGGAAGATGACGAATTGGCAAGTCCGGAATACGATCTAAATGATCCGTTCCTCGACTCACAGCCCATGTGA

mRNA sequence

ATGTTAGTCAAAAATCTCAAAATTAAATGGTGGGATAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTTCAAGATATCGATCAGAAAAAGAACGCAGAGTTCCTGAACGATAAATCAAAACTTTTAGCAGCATTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATGCCTCTACAAGCTCAAAATCAGCGTCTTCCTCCATACAGGAAGATGACGAATTGGCAAGTCCGGAATACGATCTAAATGATCCGTTCCTCGACTCACAGCCCATGTGA

Coding sequence (CDS)

ATGTTAGTCAAAAATCTCAAAATTAAATGGTGGGATAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTTCAAGATATCGATCAGAAAAAGAACGCAGAGTTCCTGAACGATAAATCAAAACTTTTAGCAGCATTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATGCCTCTACAAGCTCAAAATCAGCGTCTTCCTCCATACAGGAAGATGACGAATTGGCAAGTCCGGAATACGATCTAAATGATCCGTTCCTCGACTCACAGCCCATGTGA

Protein sequence

MLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSIQEDDELASPEYDLNDPFLDSQPM
Homology
BLAST of PI0007998 vs. ExPASy TrEMBL
Match: A0A5A7SWC0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00570 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.3e-40
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 0

Query: 1   MLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQAT 60
           ML KNLKIK W+KYNFQHATIKH+KEWFAEN YLQDIDQ+KN EFLNDKSKLL ALAQAT
Sbjct: 1   MLAKNLKIKLWEKYNFQHATIKHIKEWFAENKYLQDIDQRKNVEFLNDKSKLLVALAQAT 60

Query: 61  TDADFQRLLSTAVNASTSSKSASSSIQEDDELASPEYDLNDPFLDSQPM 110
           TDADFQRLLSTAVNAS+SSKS SSSIQED+E   PEYDL+D  LDSQPM
Sbjct: 61  TDADFQRLLSTAVNASSSSKSPSSSIQEDEEQIDPEYDLDD--LDSQPM 107

BLAST of PI0007998 vs. ExPASy TrEMBL
Match: A0A5A7SNT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001890 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-34
Identity = 78/98 (79.59%), Postives = 87/98 (88.78%), Query Frame = 0

Query: 12  DKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLST 71
           +KY+FQHATIKH+KEWF ENGYLQDIDQ KN +FLN+KSKLLA LAQATTDADFQRLL T
Sbjct: 47  EKYDFQHATIKHIKEWFVENGYLQDIDQGKNVKFLNEKSKLLATLAQATTDADFQRLLPT 106

Query: 72  AVNASTSSKSASSSIQEDDELASPEYDLNDPFLDSQPM 110
            VNASTSSKS SS +QED+E   PEYDL++PFLDSQPM
Sbjct: 107 TVNASTSSKSTSSFLQEDEEQVDPEYDLDNPFLDSQPM 144

BLAST of PI0007998 vs. ExPASy TrEMBL
Match: A0A5A7UZX0 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00530 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.9e-25
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 0

Query: 1   MLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQAT 60
           +L+KNLKIKWW KYNFQHATIKH+KEWFA+NGYLQDIDQ+KN EFLNDKSKLLAALAQAT
Sbjct: 67  ILLKNLKIKWWKKYNFQHATIKHIKEWFADNGYLQDIDQRKNIEFLNDKSKLLAALAQAT 126

Query: 61  TDADF 66
           TDADF
Sbjct: 127 TDADF 131

BLAST of PI0007998 vs. ExPASy TrEMBL
Match: A0A5D3BI61 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G00950 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.7e-21
Identity = 60/81 (74.07%), Postives = 67/81 (82.72%), Query Frame = 0

Query: 28  FAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSIQ 87
           + +NG LQDIDQ+KNA+FLNDK K LAAL QAT DADFQRLLSTAVN S+SSK A S IQ
Sbjct: 139 YQKNGDLQDIDQRKNAKFLNDKLKFLAALVQATIDADFQRLLSTAVNTSSSSKPAPSFIQ 198

Query: 88  EDDELASPEYDLNDPFLDSQP 109
           ED+E    EYDL+DPFLDSQP
Sbjct: 199 EDEEQVDLEYDLDDPFLDSQP 219

BLAST of PI0007998 vs. ExPASy TrEMBL
Match: A0A0A0KYU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G427780 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-17
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 3  VKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTD 62
          VK + +K + K   +HATIKHMKEWFAEN YLQDIDQ+KN EFLNDKSKLLA LAQATTD
Sbjct: 9  VKVVAVKQFIK---EHATIKHMKEWFAENNYLQDIDQRKNIEFLNDKSKLLALLAQATTD 68

Query: 63 ADFQRLLST 72
           +FQRLLST
Sbjct: 69 TNFQRLLST 74

BLAST of PI0007998 vs. NCBI nr
Match: KAA0034823.1 (hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 0

Query: 1   MLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQAT 60
           ML KNLKIK W+KYNFQHATIKH+KEWFAEN YLQDIDQ+KN EFLNDKSKLL ALAQAT
Sbjct: 1   MLAKNLKIKLWEKYNFQHATIKHIKEWFAENKYLQDIDQRKNVEFLNDKSKLLVALAQAT 60

Query: 61  TDADFQRLLSTAVNASTSSKSASSSIQEDDELASPEYDLNDPFLDSQPM 110
           TDADFQRLLSTAVNAS+SSKS SSSIQED+E   PEYDL+D  LDSQPM
Sbjct: 61  TDADFQRLLSTAVNASSSSKSPSSSIQEDEEQIDPEYDLDD--LDSQPM 107

BLAST of PI0007998 vs. NCBI nr
Match: KAA0025901.1 (hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 5.4e-34
Identity = 78/98 (79.59%), Postives = 87/98 (88.78%), Query Frame = 0

Query: 12  DKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLST 71
           +KY+FQHATIKH+KEWF ENGYLQDIDQ KN +FLN+KSKLLA LAQATTDADFQRLL T
Sbjct: 47  EKYDFQHATIKHIKEWFVENGYLQDIDQGKNVKFLNEKSKLLATLAQATTDADFQRLLPT 106

Query: 72  AVNASTSSKSASSSIQEDDELASPEYDLNDPFLDSQPM 110
            VNASTSSKS SS +QED+E   PEYDL++PFLDSQPM
Sbjct: 107 TVNASTSSKSTSSFLQEDEEQVDPEYDLDNPFLDSQPM 144

BLAST of PI0007998 vs. NCBI nr
Match: KAA0059031.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 6.0e-25
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 0

Query: 1   MLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQAT 60
           +L+KNLKIKWW KYNFQHATIKH+KEWFA+NGYLQDIDQ+KN EFLNDKSKLLAALAQAT
Sbjct: 67  ILLKNLKIKWWKKYNFQHATIKHIKEWFADNGYLQDIDQRKNIEFLNDKSKLLAALAQAT 126

Query: 61  TDADF 66
           TDADF
Sbjct: 127 TDADF 131

BLAST of PI0007998 vs. NCBI nr
Match: TYJ98361.1 (hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.0e-20
Identity = 60/81 (74.07%), Postives = 67/81 (82.72%), Query Frame = 0

Query: 28  FAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSIQ 87
           + +NG LQDIDQ+KNA+FLNDK K LAAL QAT DADFQRLLSTAVN S+SSK A S IQ
Sbjct: 139 YQKNGDLQDIDQRKNAKFLNDKLKFLAALVQATIDADFQRLLSTAVNTSSSSKPAPSFIQ 198

Query: 88  EDDELASPEYDLNDPFLDSQP 109
           ED+E    EYDL+DPFLDSQP
Sbjct: 199 EDEEQVDLEYDLDDPFLDSQP 219

BLAST of PI0007998 vs. NCBI nr
Match: XP_031739746.1 (uncharacterized protein LOC116403279 [Cucumis sativus] >KAE8649669.1 hypothetical protein Csa_012459 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-17
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 3  VKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFLNDKSKLLAALAQATTD 62
          VK + +K + K   +HATIKHMKEWFAEN YLQDIDQ+KN EFLNDKSKLLA LAQATTD
Sbjct: 16 VKVVAVKQFIK---EHATIKHMKEWFAENNYLQDIDQRKNIEFLNDKSKLLALLAQATTD 75

Query: 63 ADFQRLLST 72
           +FQRLLST
Sbjct: 76 TNFQRLLST 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SWC09.3e-4084.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SNT52.6e-3479.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UZX02.9e-2589.23Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00530 PE... [more]
A0A5D3BI619.7e-2174.07Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KYU02.2e-1775.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G427780 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0034823.11.9e-3984.40hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa][more]
KAA0025901.15.4e-3479.59hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa][more]
KAA0059031.16.0e-2589.23polyprotein [Cucumis melo var. makuwa][more]
TYJ98361.12.0e-2074.07hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa][more]
XP_031739746.14.6e-1775.36uncharacterized protein LOC116403279 [Cucumis sativus] >KAE8649669.1 hypothetica... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..90
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0007998.1PI0007998.1mRNA