PI0007863 (gene) Melon (PI 482460) v1

Overview


Name	PI0007863
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr06: 12645678 .. 12646175 (+)
RNA-Seq Expression	PI0007863
Synteny	PI0007863

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAAGAAGGATAGGTTTGATTTTACTCCTAGCGTGGTGGATGAGCAGTTTGTTTCAGGTGTCATTTCTGATTTGCATTCTGGTATGACTGTGGAGGTGTTATGTGTTTATGCCTCTAATAGTAATTTGGACCGTCGTGTGCTTTGGCGTCGGTTAGTTGAGATCACTTCTAGTTGGTCGAGTCCAAGTGTGGTTATGGGAGATTTTAATGCAATTCGAGTGCACTCTGAAGCTTGTGGTGGGAGTCCGATTACTAGAGATATGGAGGAATTTGATCTTGCTATTCGCGAGGCTGACTTGGTTGAGCCAGCTGTTCAGGGAAACTGGTTCACTTGGACCAGCAAGGTGGGAGGTTCAGGTCGGTTGCGTCGGCTTGATCATATTTTGGTAAATGAGCAGGGGTTAACGGCTTGGCCTAGTCTGCGTGTTACTGTTTTGCCTTGGGGAATTTCTGACCATTCCCCTATATTATTCTATCCTGATGTTAAGCAGTAG

mRNA sequence

ATGTGGAAGAAGGATAGGTTTGATTTTACTCCTAGCGTGGTGGATGAGCAGTTTGTTTCAGGTGTCATTTCTGATTTGCATTCTGGTATGACTGTGGAGGTGTTATGTGTTTATGCCTCTAATAGTAATTTGGACCGTCGTGTGCTTTGGCGTCGGTTAGTTGAGATCACTTCTAGTTGGTCGAGTCCAAGTGTGGTTATGGGAGATTTTAATGCAATTCGAGTGCACTCTGAAGCTTGTGGTGGGAGTCCGATTACTAGAGATATGGAGGAATTTGATCTTGCTATTCGCGAGGCTGACTTGGTTGAGCCAGCTGTTCAGGGAAACTGGTTCACTTGGACCAGCAAGGTGGGAGGTTCAGGTCGGTTGCGTCGGCTTGATCATATTTTGGTAAATGAGCAGGGGTTAACGGCTTGGCCTAGTCTGCGTGTTACTGTTTTGCCTTGGGGAATTTCTGACCATTCCCCTATATTATTCTATCCTGATGTTAAGCAGTAG

Coding sequence (CDS)

ATGTGGAAGAAGGATAGGTTTGATTTTACTCCTAGCGTGGTGGATGAGCAGTTTGTTTCAGGTGTCATTTCTGATTTGCATTCTGGTATGACTGTGGAGGTGTTATGTGTTTATGCCTCTAATAGTAATTTGGACCGTCGTGTGCTTTGGCGTCGGTTAGTTGAGATCACTTCTAGTTGGTCGAGTCCAAGTGTGGTTATGGGAGATTTTAATGCAATTCGAGTGCACTCTGAAGCTTGTGGTGGGAGTCCGATTACTAGAGATATGGAGGAATTTGATCTTGCTATTCGCGAGGCTGACTTGGTTGAGCCAGCTGTTCAGGGAAACTGGTTCACTTGGACCAGCAAGGTGGGAGGTTCAGGTCGGTTGCGTCGGCTTGATCATATTTTGGTAAATGAGCAGGGGTTAACGGCTTGGCCTAGTCTGCGTGTTACTGTTTTGCCTTGGGGAATTTCTGACCATTCCCCTATATTATTCTATCCTGATGTTAAGCAGTAG

Protein sequence

MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSWSSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREADLVEPAVQGNWFTWTSKVGGSGRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYPDVKQ

Homology

[Close]

BLAST of PI0007863 vs. ExPASy TrEMBL
Match: A0A5A7V275 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00430 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.6e-67
Identity = 121/161 (75.16%), Postives = 140/161 (86.96%), Query Frame = 0


Query: 1   MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSW 60
           MWKK+RF F+  VVDEQFV+G ++DL  G+ VEV CVYASNSN++RR+LW RLVE TS+W
Sbjct: 230 MWKKNRFSFSTRVVDEQFVTGTLTDLLFGVCVEVFCVYASNSNIERRLLWHRLVETTSAW 289

Query: 61  SSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREADLVEPAVQGNWFTWTSKVGGS 120
           SSP VVMGDFNAIRVHSEA GGSPI  +ME+FDLAIR+ADLVEP+VQGNWFTWTSKV GS
Sbjct: 290 SSPGVVMGDFNAIRVHSEAFGGSPIQGEMEDFDLAIRDADLVEPSVQGNWFTWTSKVHGS 349

Query: 121 GRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP 162
           G LRRLD +LVN+  L+AWP++ V VLPWGISDHSPILFYP
Sbjct: 350 GMLRRLDRVLVNDAWLSAWPTMLVNVLPWGISDHSPILFYP 390

[Close]

BLAST of PI0007863 vs. ExPASy TrEMBL
Match: A0A1S3CRZ6 (uncharacterized protein LOC103504100 OS=Cucumis melo OX=3656 GN=LOC103504100 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.6e-67
Identity = 121/161 (75.16%), Postives = 140/161 (86.96%), Query Frame = 0


Query: 1   MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSW 60
           MWKK+RF F+  VVDEQFV+G ++DL  G+ VEV CVYASNSN++RR+LW RLVE TS+W
Sbjct: 247 MWKKNRFSFSTRVVDEQFVTGTLTDLLFGVCVEVFCVYASNSNIERRLLWHRLVETTSAW 306

Query: 61  SSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREADLVEPAVQGNWFTWTSKVGGS 120
           SSP VVMGDFNAIRVHSEA GGSPI  +ME+FDLAIR+ADLVEP+VQGNWFTWTSKV GS
Sbjct: 307 SSPGVVMGDFNAIRVHSEAFGGSPIQGEMEDFDLAIRDADLVEPSVQGNWFTWTSKVHGS 366

Query: 121 GRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP 162
           G LRRLD +LVN+  L+AWP++ V VLPWGISDHSPILFYP
Sbjct: 367 GMLRRLDRVLVNDAWLSAWPTMLVNVLPWGISDHSPILFYP 407

[Close]

BLAST of PI0007863 vs. ExPASy TrEMBL
Match: A0A5A7TZS0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19358G00020 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 3.3e-65
Identity = 118/161 (73.29%), Postives = 137/161 (85.09%), Query Frame = 0


Query: 1   MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSW 60
           MWKK RF F   V+DE+FV G ++DL  G+ VEV+CVYASNS+ +RR LWR L EITS+W
Sbjct: 35  MWKKKRFSFITHVMDEEFVKGTLTDLLFGVCVEVICVYASNSHSERRFLWRLLFEITSAW 94

Query: 61  SSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREADLVEPAVQGNWFTWTSKVGGS 120
           SS  VVMGDFNAIRVHSEA GGSPI  +MEEFDLAIR+ADLVEP+VQGNWFTWTSKV GS
Sbjct: 95  SSLGVVMGDFNAIRVHSEAFGGSPIQGEMEEFDLAIRDADLVEPSVQGNWFTWTSKVQGS 154

Query: 121 GRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP 162
           G LRRLD +LVN++ L+AWP++R+ VLPWGISDHSPILFYP
Sbjct: 155 GMLRRLDRVLVNDEWLSAWPTMRINVLPWGISDHSPILFYP 195

[Close]

BLAST of PI0007863 vs. ExPASy TrEMBL
Match: A0A5A7SPE5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00620 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.7e-65
Identity = 117/161 (72.67%), Postives = 138/161 (85.71%), Query Frame = 0


Query: 1   MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSW 60
           MWKK+RF F+  V+DEQFV+G ++DL SG+ VEV CVYASNSN++RR+LW RLVEITS+W
Sbjct: 498 MWKKNRFSFSTHVMDEQFVTGTLTDLLSGVCVEVFCVYASNSNIERRLLWHRLVEITSAW 557

Query: 61  SSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREADLVEPAVQGNWFTWTSKVGGS 120
           SSP VVM DFNAIRVHSEA  GSPI  +ME+F+LAIR+ADLVEP+VQGNWFTWTSKV GS
Sbjct: 558 SSPGVVMEDFNAIRVHSEAFRGSPIQGEMEDFNLAIRDADLVEPSVQGNWFTWTSKVQGS 617

Query: 121 GRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP 162
           G LRRLD +LVN+  L+ WP++ V VLPWGISDH PILFYP
Sbjct: 618 GMLRRLDRVLVNDDWLSTWPTMLVNVLPWGISDHYPILFYP 658

[Close]

BLAST of PI0007863 vs. ExPASy TrEMBL
Match: A0A5D3DXE4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1467G00020 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 5.7e-65
Identity = 117/161 (72.67%), Postives = 138/161 (85.71%), Query Frame = 0


Query: 1   MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSW 60
           MWKK+RF F+  V+DEQFV+G ++DL SG+ VEV CVYASNSN++RR+LW RLVEITS+W
Sbjct: 498 MWKKNRFSFSTHVMDEQFVTGTLTDLLSGVCVEVFCVYASNSNIERRLLWHRLVEITSAW 557

Query: 61  SSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREADLVEPAVQGNWFTWTSKVGGS 120
           SSP VVM DFNAIRVHSEA  GSPI  +ME+F+LAIR+ADLVEP+VQGNWFTWTSKV GS
Sbjct: 558 SSPGVVMEDFNAIRVHSEAFRGSPIQGEMEDFNLAIRDADLVEPSVQGNWFTWTSKVQGS 617

Query: 121 GRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP 162
           G LRRLD +LVN+  L+ WP++ V VLPWGISDH PILFYP
Sbjct: 618 GMLRRLDRVLVNDDWLSTWPTMLVNVLPWGISDHYPILFYP 658

[Close]

BLAST of PI0007863 vs. NCBI nr
Match: XP_008466769.1 (PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo])

HSP 1 Score: 265.4 bits (677), Expect = 3.3e-67
Identity = 121/161 (75.16%), Postives = 140/161 (86.96%), Query Frame = 0


Query: 1   MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSW 60
           MWKK+RF F+  VVDEQFV+G ++DL  G+ VEV CVYASNSN++RR+LW RLVE TS+W
Sbjct: 247 MWKKNRFSFSTRVVDEQFVTGTLTDLLFGVCVEVFCVYASNSNIERRLLWHRLVETTSAW 306

Query: 61  SSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREADLVEPAVQGNWFTWTSKVGGS 120
           SSP VVMGDFNAIRVHSEA GGSPI  +ME+FDLAIR+ADLVEP+VQGNWFTWTSKV GS
Sbjct: 307 SSPGVVMGDFNAIRVHSEAFGGSPIQGEMEDFDLAIRDADLVEPSVQGNWFTWTSKVHGS 366

Query: 121 GRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP 162
           G LRRLD +LVN+  L+AWP++ V VLPWGISDHSPILFYP
Sbjct: 367 GMLRRLDRVLVNDAWLSAWPTMLVNVLPWGISDHSPILFYP 407

[Close]

BLAST of PI0007863 vs. NCBI nr
Match: KAA0059841.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK24796.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 265.4 bits (677), Expect = 3.3e-67
Identity = 121/161 (75.16%), Postives = 140/161 (86.96%), Query Frame = 0


Query: 1   MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSW 60
           MWKK+RF F+  VVDEQFV+G ++DL  G+ VEV CVYASNSN++RR+LW RLVE TS+W
Sbjct: 230 MWKKNRFSFSTRVVDEQFVTGTLTDLLFGVCVEVFCVYASNSNIERRLLWHRLVETTSAW 289

Query: 61  SSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREADLVEPAVQGNWFTWTSKVGGS 120
           SSP VVMGDFNAIRVHSEA GGSPI  +ME+FDLAIR+ADLVEP+VQGNWFTWTSKV GS
Sbjct: 290 SSPGVVMGDFNAIRVHSEAFGGSPIQGEMEDFDLAIRDADLVEPSVQGNWFTWTSKVHGS 349

Query: 121 GRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP 162
           G LRRLD +LVN+  L+AWP++ V VLPWGISDHSPILFYP
Sbjct: 350 GMLRRLDRVLVNDAWLSAWPTMLVNVLPWGISDHSPILFYP 390

[Close]

BLAST of PI0007863 vs. NCBI nr
Match: KAA0046851.1 (uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 257.7 bits (657), Expect = 6.9e-65
Identity = 118/161 (73.29%), Postives = 137/161 (85.09%), Query Frame = 0


Query: 1   MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSW 60
           MWKK RF F   V+DE+FV G ++DL  G+ VEV+CVYASNS+ +RR LWR L EITS+W
Sbjct: 35  MWKKKRFSFITHVMDEEFVKGTLTDLLFGVCVEVICVYASNSHSERRFLWRLLFEITSAW 94

Query: 61  SSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREADLVEPAVQGNWFTWTSKVGGS 120
           SS  VVMGDFNAIRVHSEA GGSPI  +MEEFDLAIR+ADLVEP+VQGNWFTWTSKV GS
Sbjct: 95  SSLGVVMGDFNAIRVHSEAFGGSPIQGEMEEFDLAIRDADLVEPSVQGNWFTWTSKVQGS 154

Query: 121 GRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP 162
           G LRRLD +LVN++ L+AWP++R+ VLPWGISDHSPILFYP
Sbjct: 155 GMLRRLDRVLVNDEWLSAWPTMRINVLPWGISDHSPILFYP 195

[Close]

BLAST of PI0007863 vs. NCBI nr
Match: TYK28099.1 (uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 1.2e-64
Identity = 117/161 (72.67%), Postives = 138/161 (85.71%), Query Frame = 0


Query: 1   MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSW 60
           MWKK+RF F+  V+DEQFV+G ++DL SG+ VEV CVYASNSN++RR+LW RLVEITS+W
Sbjct: 498 MWKKNRFSFSTHVMDEQFVTGTLTDLLSGVCVEVFCVYASNSNIERRLLWHRLVEITSAW 557

Query: 61  SSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREADLVEPAVQGNWFTWTSKVGGS 120
           SSP VVM DFNAIRVHSEA  GSPI  +ME+F+LAIR+ADLVEP+VQGNWFTWTSKV GS
Sbjct: 558 SSPGVVMEDFNAIRVHSEAFRGSPIQGEMEDFNLAIRDADLVEPSVQGNWFTWTSKVQGS 617

Query: 121 GRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP 162
           G LRRLD +LVN+  L+ WP++ V VLPWGISDH PILFYP
Sbjct: 618 GMLRRLDRVLVNDDWLSTWPTMLVNVLPWGISDHYPILFYP 658

[Close]

BLAST of PI0007863 vs. NCBI nr
Match: KAA0026071.1 (uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 256.9 bits (655), Expect = 1.2e-64
Identity = 117/161 (72.67%), Postives = 138/161 (85.71%), Query Frame = 0


Query: 1   MWKKDRFDFTPSVVDEQFVSGVISDLHSGMTVEVLCVYASNSNLDRRVLWRRLVEITSSW 60
           MWKK+RF F+  V+DEQFV+G ++DL SG+ VEV CVYASNSN++RR+LW RLVEITS+W
Sbjct: 498 MWKKNRFSFSTHVMDEQFVTGTLTDLLSGVCVEVFCVYASNSNIERRLLWHRLVEITSAW 557

Query: 61  SSPSVVMGDFNAIRVHSEACGGSPITRDMEEFDLAIREADLVEPAVQGNWFTWTSKVGGS 120
           SSP VVM DFNAIRVHSEA  GSPI  +ME+F+LAIR+ADLVEP+VQGNWFTWTSKV GS
Sbjct: 558 SSPGVVMEDFNAIRVHSEAFRGSPIQGEMEDFNLAIRDADLVEPSVQGNWFTWTSKVQGS 617

Query: 121 GRLRRLDHILVNEQGLTAWPSLRVTVLPWGISDHSPILFYP 162
           G LRRLD +LVN+  L+ WP++ V VLPWGISDH PILFYP
Sbjct: 618 GMLRRLDRVLVNDDWLSTWPTMLVNVLPWGISDHYPILFYP 658

The following BLAST results are available for this feature:

BLAST of PI0007863 vs.


Match Name	E-value	Identity	Description

BLAST of PI0007863 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V275	1.6e-67	75.16	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18...	[more]
A0A1S3CRZ6	1.6e-67	75.16	uncharacterized protein LOC103504100 OS=Cucumis melo OX=3656 GN=LOC103504100 PE=...	[more]
A0A5A7TZS0	3.3e-65	73.29	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7SPE5	5.7e-65	72.67	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DXE4	5.7e-65	72.67	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of PI0007863 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466769.1	3.3e-67	75.16	PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo]	[more]
KAA0059841.1	3.3e-67	75.16	reverse transcriptase [Cucumis melo var. makuwa] >TYK24796.1 reverse transcripta...	[more]
KAA0046851.1	6.9e-65	73.29	uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]	[more]
TYK28099.1	1.2e-64	72.67	uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]	[more]
KAA0026071.1	1.2e-64	72.67	uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]	[more]

BLAST of PI0007863 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 2..159 e-value: 1.5E-19 score: 72.7
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 19..159
IPR005135	Endonuclease/exonuclease/phosphatase	PFAM	PF03372	Exo_endo_phos	coord: 45..154 e-value: 9.1E-7 score: 28.7
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 37..159
None	No IPR available	PANTHER	PTHR33710:SF36	SUBFAMILY NOT NAMED	coord: 37..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0007863.1	PI0007863.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0003824	catalytic activity