PI0007858 (gene) Melon (PI 482460) v1

Overview
NamePI0007858
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr03: 16315738 .. 16316139 (+)
RNA-Seq ExpressionPI0007858
SyntenyPI0007858
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCCAAGCTATGCACCGACCATTGATTTGAACCCTGTACGCTCAGTTTTGAACATCCTGATTATTAAAATATCTAAAGGGGACGAAGTACCAGTGAATACGATCGAGGGTGCCATGCTCCATAACCTTGACAAACAGCTGGTCGTTTATGACCCACTCATCAAAGGAAAATACCCCACCTCTGATGACGTAGGAGAGACAAGCTCAGCAAGAAAAGTTGACCCTACTATTGAGACTGTTGGAATTTATGTCCTAAAACTCGTAGTTTGTAGTTTAAACTATATTTTATTCAATAAAGTGGTTATTGAGGACTTATTAGTGAAAATAGAATACTATAATCTTAAATCCAATAAACTAAAGGTCACAAGGCTATCTAGTGTAGACTTAAATTTTATGTAG

mRNA sequence

ATGTCGCCAAGCTATGCACCGACCATTGATTTGAACCCTGTACGCTCAGTTTTGAACATCCTGATTATTAAAATATCTAAAGGGGACGAAGTACCAGTGAATACGATCGAGGGTGCCATGCTCCATAACCTTGACAAACAGCTGGTCGTTTATGACCCACTCATCAAAGGAAAATACCCCACCTCTGATGACGTAGGAGAGACAAGCTCAGCAAGAAAAGTTGACCCTACTATTGAGACTGTTGGAATTTATGTCCTAAAACTCGTAGTTTGTAGTTTAAACTATATTTTATTCAATAAAGTGGTTATTGAGGACTTATTAGTGAAAATAGAATACTATAATCTTAAATCCAATAAACTAAAGGTCACAAGGCTATCTAGTGTAGACTTAAATTTTATGTAG

Coding sequence (CDS)

ATGTCGCCAAGCTATGCACCGACCATTGATTTGAACCCTGTACGCTCAGTTTTGAACATCCTGATTATTAAAATATCTAAAGGGGACGAAGTACCAGTGAATACGATCGAGGGTGCCATGCTCCATAACCTTGACAAACAGCTGGTCGTTTATGACCCACTCATCAAAGGAAAATACCCCACCTCTGATGACGTAGGAGAGACAAGCTCAGCAAGAAAAGTTGACCCTACTATTGAGACTGTTGGAATTTATGTCCTAAAACTCGTAGTTTGTAGTTTAAACTATATTTTATTCAATAAAGTGGTTATTGAGGACTTATTAGTGAAAATAGAATACTATAATCTTAAATCCAATAAACTAAAGGTCACAAGGCTATCTAGTGTAGACTTAAATTTTATGTAG

Protein sequence

MSPSYAPTIDLNPVRSVLNILIIKISKGDEVPVNTIEGAMLHNLDKQLVVYDPLIKGKYPTSDDVGETSSARKVDPTIETVGIYVLKLVVCSLNYILFNKVVIEDLLVKIEYYNLKSNKLKVTRLSSVDLNFM
Homology
[Close]
BLAST of PI0007858 vs. ExPASy TrEMBL
Match: A0A5D3DBA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00450 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 0 

Query: 1  MSPSYAPT----IDLNPVRSVLNILIIKISKGDEVPVNTIEGAMLHNLDKQLVVYDPLIK 60
          MSPS AP+    I+ +     LN+LI+ +S+ +  P N +E A L NLD QL+VYDPL +
Sbjct: 1  MSPSNAPSNPSIINSDLEHLNLNVLIVNLSEREAKPENVVENATLLNLDLQLIVYDPLFQ 60

Query: 61 GKYPTSDDVGETSSARKVDPTIE 80
             P  +D GETS  R+    I+
Sbjct: 61 -DIPVYEDAGETSLVRRAQLKIK 82

[Close]
BLAST of PI0007858 vs. ExPASy TrEMBL
Match: A0A5A7UXS9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00490 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.5e-04
Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 0 

Query: 1   MSPSYAPTIDLNPVRSVLNILIIKISKGDEVPVNTIEGAMLHNLDKQLVVYDPLIKGKYP 60
           +SPS   T + +P+   LN+L+I   +GD    +      LH+ +K++VV DPL KGK  
Sbjct: 150 ISPSLLSTKNDDPLHPNLNVLVIVFLEGDVTKRDATTINQLHDFEKRVVVDDPLTKGKQL 209

Query: 61  TSDDVGETSSARKVDPTIE 80
               VGETSS    DP +E
Sbjct: 210 ILGVVGETSSPMPKDPALE 228

[Close]
BLAST of PI0007858 vs. NCBI nr
Match: TYK20907.1 (hypothetical protein E5676_scaffold284G00450 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 3.8e-05
Identity = 35/83 (42.17%), Postives = 49/83 (59.04%), Query Frame = 0 

Query: 1  MSPSYAPT----IDLNPVRSVLNILIIKISKGDEVPVNTIEGAMLHNLDKQLVVYDPLIK 60
          MSPS AP+    I+ +     LN+LI+ +S+ +  P N +E A L NLD QL+VYDPL +
Sbjct: 1  MSPSNAPSNPSIINSDLEHLNLNVLIVNLSEREAKPENVVENATLLNLDLQLIVYDPLFQ 60

Query: 61 GKYPTSDDVGETSSARKVDPTIE 80
             P  +D GETS  R+    I+
Sbjct: 61 -DIPVYEDAGETSLVRRAQLKIK 82

[Close]
BLAST of PI0007858 vs. NCBI nr
Match: KAA0058996.1 (hypothetical protein E6C27_scaffold233G00110 [Cucumis melo var. makuwa] >TYK19552.1 hypothetical protein E5676_scaffold416G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 9.3e-04
Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 0 

Query: 1   MSPSYAPTIDLNPVRSVLNILIIKISKGDEVPVNTIEGAMLHNLDKQLVVYDPLIKGKYP 60
           +SPS   T + +P+   LN+L+I   +GD    +      LH+ +K++VV DPL KGK  
Sbjct: 150 ISPSLLSTKNDDPLHPNLNVLVIVFLEGDVTKRDATTINQLHDFEKRVVVDDPLTKGKQL 209

Query: 61  TSDDVGETSSARKVDPTIE 80
               VGETSS    DP +E
Sbjct: 210 ILGVVGETSSPMPKDPALE 228

The following BLAST results are available for this feature:
BLAST of PI0007858 vs.
Match NameE-valueIdentityDescription
BLAST of PI0007858 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DBA41.8e-0542.17Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UXS94.5e-0439.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of PI0007858 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK20907.13.8e-0542.17hypothetical protein E5676_scaffold284G00450 [Cucumis melo var. makuwa][more]
KAA0058996.19.3e-0439.24hypothetical protein E6C27_scaffold233G00110 [Cucumis melo var. makuwa] >TYK1955... [more]
BLAST of PI0007858 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0007858.1PI0007858.1mRNA