PI0007750 (gene) Melon (PI 482460) v1

Overview
NamePI0007750
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 297 family
Locationchr07: 14197977 .. 14200170 (-)
RNA-Seq ExpressionPI0007750
SyntenyPI0007750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGTTTCGAATAATTGTGAAAGGAAAATACACAATCGAAAAGAAAGAAGGTGAGAAAGATACCTTGTGTTTCTCAAAGGTGGCGAGACTAGTTCTCTAGCCCTTATTAAAATGATTACTCCATTGAAATTTGGTGGAAAATTGGTGAAATTCTAGCCATGTCTCAGCGATCTAGACTAGAATTTTGAAAGAGGAAATTTCTATGGAGAATTTGGCAGAGTAAGGCTAAGGAATTTAATATGCAAAAAATATAGAGGAATTAAAATTCTATAGACTTTGTATTAAGAATTAAATATGGAATCAAAGTAATTTGGAATGAATTACAAGGGGGTATTTATAGGTTTCTAAAAGGAAGTTATTTGGAAAAATAATTGCTATTTGACAGTTATTTTGTTACAGTGGGCTTGAGCTTGGACCTTGTGGGCTTGGCGGTTATGCAGATTGTATGTGATTTGAGTGTGCTTGCAGAGTTAGGCGATCTGGTGAATGCGATGAAGTATGGAGCTTGATAAGTCAGTTGAGTATGAGCTTGGGCGAGCTGGTGCTGAATGAGGCGAAGCACGAGGTACTTCTGAAGTTTGAAGTGTTCGCGAGGCAAGTTGGGCGTTCAGAGTATGGAAGGTGATGCTTTGTGAAGGCAGAATGCGTTGAGTCATGCGATCTAGGAGTAGTATGTAATTTTGCCGCAAAGAAGGATTTGAATTCCTTTATGGGAGATTACTGTTTTGCCCTTGATTCTGTAATTGGTCATTTTTGTCCGCAAGGAGTGTGTTTTAGCTCATTTTTGTGTCTTAGAGCTTGTGTAGGGGTCTAGTATCATATCCTATGTAAAAATGATGAGTATTTGGAGCTTATTATGAAGAATTAGGATAGATATTTTTATTCAAAATAGTTCTATCAAAACCCCTCACTTAAGACTTGATCGTCCCGATTAAGGAAAATTAACAATATGCCAACGTTCATTCATACACCATGCAAGGTAATCATGCGTTATTTTGCAAAATTAAAGTTCAAGCATTCATGCAAACTAAAGTAGGAAATCTAATATTTCCCATTGATTTTTACATAATTGAAATGAATAATGAATTTGCACATACATCCCCTAACATACTTTTAGGAAGACCATTCTTGAAAACCGCTAAAGTCATAATAAATGCAGATAAAGGTCTTCTTAGTGTTGAGTTTGACGGAGATGTTGTGTCTTTCAATATTTTTTATGATGTTAAATCCTCTAGTGATCATGTTTCATTATGTGCACTTGATGCTTTAGAATCATTGGAAACTTTAGAAAAGCATGATAAATTCAATGAGCTTATAGATCAAGCAACTCTAGAATATGTTGATTATGAATTTGCCAAGGAGAAACCTAGTGATGATGATCTTTCTACCTTCCTTGACTTTGTTACTAGTATAAATGATGAGCATGCTTTAATAGATAACTTTACAACACTTGAACATCATGCTCTAGCTAATAGTTTTGCAACTAATAATGAACATGATCTAGGAAGAGATATTAAGGATGGCGATGAACAAATTTTAAAAACCATTGGCAGAAATAATGTTGATAACATAAATTTGCAATTAGAAAACCTTGAAAAAGAGAACGATTCTTGTGAAATTTGTTTGTATAAAGAATGTGAAATTTTTTTAATGAACCTATTTTACCTTTGCATGATGTACTTTTTGAAAAAGAGATTCTTGAAAATAAAAATTTGCTAGAACCTATGATAGAACTATTTTTGACTAAAAATATCTAGCATAATTCTGCCCATTATCATTCAAATACTCACTAATATGATATTTTTATGTAGAATATGATAATAGACCCCGATACGAGCTCAACGACACTAAAATCAACCAAATTGGACTTCTAGCAAACAAAAACGGTAAAAAAACAAGCTCAAGGGGCAAATCAGTAATTTCCCAGAAGAAATTCAAAGCATTTCCGCGCGACAAGATCACCCAGAGACCAAAACACATAACAAATGCGTCAGCCTCTCTTCGCGAAGCTCACCGGCAGCCTGCAGAATACCCATTTCGTTCTCAGACGCCCATTTCGCAACTCGCAGCGCTTCCTTCAGCCCACCTTAGTGCCCCGCACGTCATCTCATGGCTCATCCTGCGTTTTGATCTCCCGAGCTCGCATACTGCCTTCTCTGCAGAGCCTCATTTCGCCTCGCATCAAGCTTAA

mRNA sequence

ATGCGAGTTTCGAATAATTGTGAAAGGAAAATACACAATCGAAAAGAAAGAAGAGTTAGGCGATCTGGTGAATGCGATGAAGTATGGAGCTTGATAAGTCAGTTGAGTATGAGCTTGGGCGAGCTGGTGCTGAATGAGGCGAAGCACGAGGTACTTCTGAAGTTTGAAGTGTTCGCGAGGCAAGTTGGGCGTTCAGAGTATGGAAGTGATCATGTTTCATTATGTGCACTTGATGCTTTAGAATCATTGGAAACTTTAGAAAAGCATGATAAATTCAATGAGCTTATAGATCAAGCAACTCTAGAATATGTTGATTATGAATTTGCCAAGGAGAAACCTAGTGATGATGATCTTTCTACCTTCCTTGACTTTGTTACTAAATATGATAATAGACCCCGATACGAGCTCAACGACACTAAAATCAACCAAATTGGACTTCTAGCAAACAAAAACGGTAAAAAAACAAGCTCAAGGGGCAAATCAGTAATTTCCCAGAAGAAATTCAAAGCATTTCCGCGCGACAAGATCACCCAGAGACCAAAACACATAACAAATGCGTCAGCCTCTCTTCGCGAAGCTCACCGGCAGCCTGCAGAATACCCATTTCGTTCTCAGACGCCCATTTCGCAACTCGCAGCGCTTCCTTCAGCCCACCTTAGTGCCCCGCACGTCATCTCATGGCTCATCCTGCGTTTTGATCTCCCGAGCTCGCATACTGCCTTCTCTGCAGAGCCTCATTTCGCCTCGCATCAAGCTTAA

Coding sequence (CDS)

ATGCGAGTTTCGAATAATTGTGAAAGGAAAATACACAATCGAAAAGAAAGAAGAGTTAGGCGATCTGGTGAATGCGATGAAGTATGGAGCTTGATAAGTCAGTTGAGTATGAGCTTGGGCGAGCTGGTGCTGAATGAGGCGAAGCACGAGGTACTTCTGAAGTTTGAAGTGTTCGCGAGGCAAGTTGGGCGTTCAGAGTATGGAAGTGATCATGTTTCATTATGTGCACTTGATGCTTTAGAATCATTGGAAACTTTAGAAAAGCATGATAAATTCAATGAGCTTATAGATCAAGCAACTCTAGAATATGTTGATTATGAATTTGCCAAGGAGAAACCTAGTGATGATGATCTTTCTACCTTCCTTGACTTTGTTACTAAATATGATAATAGACCCCGATACGAGCTCAACGACACTAAAATCAACCAAATTGGACTTCTAGCAAACAAAAACGGTAAAAAAACAAGCTCAAGGGGCAAATCAGTAATTTCCCAGAAGAAATTCAAAGCATTTCCGCGCGACAAGATCACCCAGAGACCAAAACACATAACAAATGCGTCAGCCTCTCTTCGCGAAGCTCACCGGCAGCCTGCAGAATACCCATTTCGTTCTCAGACGCCCATTTCGCAACTCGCAGCGCTTCCTTCAGCCCACCTTAGTGCCCCGCACGTCATCTCATGGCTCATCCTGCGTTTTGATCTCCCGAGCTCGCATACTGCCTTCTCTGCAGAGCCTCATTTCGCCTCGCATCAAGCTTAA

Protein sequence

MRVSNNCERKIHNRKERRVRRSGECDEVWSLISQLSMSLGELVLNEAKHEVLLKFEVFARQVGRSEYGSDHVSLCALDALESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSDDDLSTFLDFVTKYDNRPRYELNDTKINQIGLLANKNGKKTSSRGKSVISQKKFKAFPRDKITQRPKHITNASASLREAHRQPAEYPFRSQTPISQLAALPSAHLSAPHVISWLILRFDLPSSHTAFSAEPHFASHQA
Homology
[Close]
BLAST of PI0007750 vs. ExPASy TrEMBL
Match: A0A5A7U2G5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001340 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.1e-18
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 0 

Query: 66  EYGSDHVSLCALDALESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSDDDLSTFLDFV 125
           +Y +DHVSLCALD LESLETLE+HDKF+ELIDQATL+YVD +FAK KPSD+DLS FLDFV
Sbjct: 51  KYSNDHVSLCALDTLESLETLEEHDKFDELIDQATLDYVDNKFAKNKPSDNDLSIFLDFV 110

Query: 126 TKYDN 131
           T  ++
Sbjct: 111 TSVND 115

[Close]
BLAST of PI0007750 vs. ExPASy TrEMBL
Match: A0A5D3CSW0 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00970 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.0e-17
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0 

Query: 69  SDHVSLCALDALESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSDDDLSTFLDFVTKY 128
           +DHVSLCALD  ESL+TLE+HDKFNELIDQATLEYVD EFAKEKPS DDLS FLDF+T  
Sbjct: 54  NDHVSLCALDTFESLKTLEEHDKFNELIDQATLEYVDNEFAKEKPS-DDLSIFLDFITSI 113

Query: 129 DNRPRYE 136
           ++    E
Sbjct: 114 NDEHALE 119

[Close]
BLAST of PI0007750 vs. ExPASy TrEMBL
Match: A0A5D3BTM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00420 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.8e-17
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 66  EYGSDHVSLCALDALESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSDDDLSTFLDFV 125
           +Y +DHVSLCALD LESLETLE+HD F+ELIDQATL+YVD +FAK KPSD+DLS FLDFV
Sbjct: 240 KYSNDHVSLCALDTLESLETLEEHDIFDELIDQATLDYVDNKFAKNKPSDNDLSIFLDFV 299

Query: 126 TKYDN 131
              ++
Sbjct: 300 ASVND 304

[Close]
BLAST of PI0007750 vs. ExPASy TrEMBL
Match: A0A5D3CW21 (Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00170 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-16
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0 

Query: 71  HVSLCALDALESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSDDDLSTFLDFVTKYDN 130
           HVSLCALD LESL+ LE+HDKFNELIDQATLE+V+ EFAK KPSDDDLS FLDFVT  ++
Sbjct: 141 HVSLCALDTLESLKKLEEHDKFNELIDQATLEHVENEFAKNKPSDDDLSIFLDFVTSVND 200

[Close]
BLAST of PI0007750 vs. ExPASy TrEMBL
Match: A0A5A7V4I7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00430 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.0e-16
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 0 

Query: 33  SQLSMSLGELVLNEAKHEVLLKFEVFARQVGRSEYGSDHVSLCALDALESLETLEKHDKF 92
           S+LS    E    E   EV  K EV    +  ++  +DH+SLCAL+  ESLETLEKHD+F
Sbjct: 29  SRLSQPQKEFNNGEELLEVFKKVEVNLPLL-TTKSSNDHLSLCALETFESLETLEKHDQF 88

Query: 93  NELIDQATLEYVDYEFAKEKPSDDDLSTFLDF 125
           +ELIDQATLEYV+ EFAK KPSDDD+S FLDF
Sbjct: 89  DELIDQATLEYVENEFAKNKPSDDDISIFLDF 119

[Close]
BLAST of PI0007750 vs. NCBI nr
Match: KAA0047865.1 (hypothetical protein E6C27_scaffold133G001340 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 4.3e-18
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 0 

Query: 66  EYGSDHVSLCALDALESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSDDDLSTFLDFV 125
           +Y +DHVSLCALD LESLETLE+HDKF+ELIDQATL+YVD +FAK KPSD+DLS FLDFV
Sbjct: 51  KYSNDHVSLCALDTLESLETLEEHDKFDELIDQATLDYVDNKFAKNKPSDNDLSIFLDFV 110

Query: 126 TKYDN 131
           T  ++
Sbjct: 111 TSVND 115

[Close]
BLAST of PI0007750 vs. NCBI nr
Match: KAE8649397.1 (hypothetical protein Csa_011845 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-17
Identity = 55/86 (63.95%), Postives = 65/86 (75.58%), Query Frame = 0 

Query: 69  SDHVSLCALDALESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSDDDLSTFLDFVTKY 128
           +DHVSLCALD LESLETLE+ DK NELIDQATLEYVD EF+KEKPS+DDLS FLDFVT  
Sbjct: 321 NDHVSLCALDTLESLETLEEQDKLNELIDQATLEYVDNEFSKEKPSNDDLSIFLDFVTSI 380

Query: 129 DNRPRYELNDT--KINQIGLLANKNG 153
           ++      N T  K + +GL  + +G
Sbjct: 381 NDEHALVDNVTTHKQHALGLSIDLDG 406

[Close]
BLAST of PI0007750 vs. NCBI nr
Match: KAA0054444.1 (Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa] >TYK14595.1 Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 8.2e-17
Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0 

Query: 69  SDHVSLCALDALESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSDDDLSTFLDFVTKY 128
           +DHVSLCALD  ESL+TLE+HDKFNELIDQATLEYVD EFAKEKPS DDLS FLDF+T  
Sbjct: 54  NDHVSLCALDTFESLKTLEEHDKFNELIDQATLEYVDNEFAKEKPS-DDLSIFLDFITSI 113

Query: 129 DNRPRYE 136
           ++    E
Sbjct: 114 NDEHALE 119

[Close]
BLAST of PI0007750 vs. NCBI nr
Match: KAE8647060.1 (hypothetical protein Csa_022980 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 8.2e-17
Identity = 55/94 (58.51%), Postives = 63/94 (67.02%), Query Frame = 0 

Query: 69  SDHVSLCALDALESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSDDDLSTFLDFVTKY 128
           +DHVSLCALD LESLETLE+ DK NELIDQATLEYVD EF+KEKPSDDDLS FL+FV   
Sbjct: 596 NDHVSLCALDTLESLETLEEQDKLNELIDQATLEYVDNEFSKEKPSDDDLSIFLEFVISI 655

Query: 129 DNRPRYELNDTKINQIGLLANKNGKKTSSRGKSV 163
           ++      N T   Q  L  N    K    G+ +
Sbjct: 656 NDEHALVDNVTTHKQHALGNNFASSKELDLGRDI 689

[Close]
BLAST of PI0007750 vs. NCBI nr
Match: TYK02152.1 (hypothetical protein E5676_scaffold388G00420 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-16
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 66  EYGSDHVSLCALDALESLETLEKHDKFNELIDQATLEYVDYEFAKEKPSDDDLSTFLDFV 125
           +Y +DHVSLCALD LESLETLE+HD F+ELIDQATL+YVD +FAK KPSD+DLS FLDFV
Sbjct: 240 KYSNDHVSLCALDTLESLETLEEHDIFDELIDQATLDYVDNKFAKNKPSDNDLSIFLDFV 299

Query: 126 TKYDN 131
              ++
Sbjct: 300 ASVND 304

The following BLAST results are available for this feature:
BLAST of PI0007750 vs.
Match NameE-valueIdentityDescription
BLAST of PI0007750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U2G52.1e-1875.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CSW04.0e-1774.63Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo va... [more]
A0A5D3BTM36.8e-1772.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CW212.0e-1678.33Retrovirus-related Pol polyprotein from transposon 297 family OS=Cucumis melo va... [more]
A0A5A7V4I72.0e-1658.70Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of PI0007750 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047865.14.3e-1875.38hypothetical protein E6C27_scaffold133G001340 [Cucumis melo var. makuwa][more]
KAE8649397.12.8e-1763.95hypothetical protein Csa_011845 [Cucumis sativus][more]
KAA0054444.18.2e-1774.63Retrovirus-related Pol polyprotein from transposon 297 family [Cucumis melo var.... [more]
KAE8647060.18.2e-1758.51hypothetical protein Csa_022980 [Cucumis sativus][more]
TYK02152.11.4e-1672.31hypothetical protein E5676_scaffold388G00420 [Cucumis melo var. makuwa][more]
BLAST of PI0007750 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0007750.1PI0007750.1mRNA