Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTAATATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAATACTTACAATGCCGGTTGGAGAGACAATCCCAACCTTAGATGGGGAAATAATAATGAACAACCCACACAAGCAACTTCTACTTCAAACAATCAAGGTAGTAATTTGGAGGATTTGGTAAAAGCTTTTGCCACTAATACAATTTTTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAAAAAATGCAATAAGCAAGTTGGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGGTACCGTCTAACCCTGACTTTCTAATTGATGAAAACAAGAAAAAGGAAGAAAATAAAGAAAACAATGCCTCTTCTCCTTCTTTAAAAGGTAAAAATAAAATTTCTGATTTTACCCCTTTTGTTCCTAACGCTCCTTTTCCTTCCAGATTAGTTCCTAA
mRNA sequence
ATGCTTAATATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAATACTTACAATGCCGGTTGGAGAGACAATCCCAACCTTAGATGGGGAAATAATAATGAACAACCCACACAAGCAACTTCTACTTCAAACAATCAAGGTAGTAATTTGGAGGATTTGGTAAAAGCTTTTGCCACTAATACAATTTTTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAAAAAATGCAATAAGCAAGTTGGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGATTAGTTCCTAA
Coding sequence (CDS)
ATGCTTAATATGACTACTCTACTAACCTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCTAATGATAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAATACTTACAATGCCGGTTGGAGAGACAATCCCAACCTTAGATGGGGAAATAATAATGAACAACCCACACAAGCAACTTCTACTTCAAACAATCAAGGTAGTAATTTGGAGGATTTGGTAAAAGCTTTTGCCACTAATACAATTTTTTTTCAAAATGAAATGAAGCAACAAATGTCTCAATTAAAAAATGCAATAAGCAAGTTGGAAGGCAAAGGTAAGCTGCCAGCTCAGCCTGATCATGCAAATGTAAGTGCCATCTCACTTAGAAGTGGTAAAATTCTGCAACCTCCTCCAAGTGAAGAAAAGATTAGTTCCTAA
Protein sequence
MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNNNEQPTQATSTSNNQGSNLEDLVKAFATNTIFFQNEMKQQMSQLKNAISKLEGKGKLPAQPDHANVSAISLRSGKILQPPPSEEKISS
Homology
BLAST of PI0007585 vs. ExPASy TrEMBL
Match:
A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)
HSP 1 Score: 243.8 bits (621), Expect = 4.7e-61
Identity = 114/154 (74.03%), Postives = 134/154 (87.01%), Query Frame = 0
Query: 1 MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWR 60
MLNMTTLLTSFVQG KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWR
Sbjct: 183 MLNMTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWR 242
Query: 61 DNPNLRWGNNNEQPTQATSTSNNQGSNLEDLVKAFATNTIFFQNEMKQQMSQLKNAISKL 120
D PNLRWGN+ + TQA STS+NQG+NLED++KA TNT+ FQ EMKQQM+QL AISK+
Sbjct: 243 DKPNLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKM 302
Query: 121 EGKGKLPAQPDHANVSAISLRSGKILQPPPSEEK 155
+GKGKLPAQPDHANVSAISLRSGKIL P ++EK
Sbjct: 303 DGKGKLPAQPDHANVSAISLRSGKILDTPTTKEK 336
BLAST of PI0007585 vs. ExPASy TrEMBL
Match:
E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)
HSP 1 Score: 243.8 bits (621), Expect = 4.7e-61
Identity = 114/154 (74.03%), Postives = 138/154 (89.61%), Query Frame = 0
Query: 1 MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWR 60
MLNMTTLLTSFVQG +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWR
Sbjct: 54 MLNMTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWR 113
Query: 61 DNPNLRWGNNNEQPTQATSTSNNQGSNLEDLVKAFATNTIFFQNEMKQQMSQLKNAISKL 120
DNPNLRWGN+N++ TQA TS+NQG+NLED++KA ATNT+ FQ EMKQQM+QL AISK+
Sbjct: 114 DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKM 173
Query: 121 EGKGKLPAQPDHANVSAISLRSGKILQPPPSEEK 155
+GKGKLPAQPD+ANVSAISLRSGKIL P ++EK
Sbjct: 174 DGKGKLPAQPDYANVSAISLRSGKILDTPTTKEK 207
BLAST of PI0007585 vs. ExPASy TrEMBL
Match:
A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)
HSP 1 Score: 242.7 bits (618), Expect = 1.1e-60
Identity = 113/154 (73.38%), Postives = 138/154 (89.61%), Query Frame = 0
Query: 1 MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWR 60
MLNMTTLLTSFVQG +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWR
Sbjct: 139 MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWR 198
Query: 61 DNPNLRWGNNNEQPTQATSTSNNQGSNLEDLVKAFATNTIFFQNEMKQQMSQLKNAISKL 120
DNPNLRWGN+N++ TQA STS+NQG+NLED++KA ATNT+ FQ EMKQQM+QL AISK+
Sbjct: 199 DNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKM 258
Query: 121 EGKGKLPAQPDHANVSAISLRSGKILQPPPSEEK 155
+GKGKL AQ ++ANVSA+SLRSGKIL P ++EK
Sbjct: 259 DGKGKLSAQSNYANVSAVSLRSGKILDTPTTKEK 292
BLAST of PI0007585 vs. ExPASy TrEMBL
Match:
A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)
HSP 1 Score: 241.9 bits (616), Expect = 1.8e-60
Identity = 114/154 (74.03%), Postives = 136/154 (88.31%), Query Frame = 0
Query: 1 MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWR 60
MLNMTTLLTSFVQG KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWR
Sbjct: 103 MLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWR 162
Query: 61 DNPNLRWGNNNEQPTQATSTSNNQGSNLEDLVKAFATNTIFFQNEMKQQMSQLKNAISKL 120
DN NLRWGN+N++ TQA STS+NQG+NLED++KA ATNT+ FQ +MKQQM+QL AISK+
Sbjct: 163 DNLNLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKM 222
Query: 121 EGKGKLPAQPDHANVSAISLRSGKILQPPPSEEK 155
+GKGKLPAQPDHANVSAISLRSGKIL P ++EK
Sbjct: 223 DGKGKLPAQPDHANVSAISLRSGKILDTPTTKEK 256
BLAST of PI0007585 vs. ExPASy TrEMBL
Match:
A0A1S3CQU8 (uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=4 SV=1)
HSP 1 Score: 241.5 bits (615), Expect = 2.4e-60
Identity = 112/154 (72.73%), Postives = 135/154 (87.66%), Query Frame = 0
Query: 1 MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWR 60
MLNMTTLLTSFVQG +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWR
Sbjct: 53 MLNMTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWR 112
Query: 61 DNPNLRWGNNNEQPTQATSTSNNQGSNLEDLVKAFATNTIFFQNEMKQQMSQLKNAISKL 120
DNPNLRWGN+N++ TQA TS+NQG+NLED++KA ATNT+ FQ +MKQQM+QL ISK+
Sbjct: 113 DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKM 172
Query: 121 EGKGKLPAQPDHANVSAISLRSGKILQPPPSEEK 155
+GKGKLPAQPDH NVSAISLRSGKIL P ++EK
Sbjct: 173 DGKGKLPAQPDHVNVSAISLRSGKILDTPTTKEK 206
BLAST of PI0007585 vs. NCBI nr
Match:
ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])
HSP 1 Score: 243.8 bits (621), Expect = 9.8e-61
Identity = 114/154 (74.03%), Postives = 138/154 (89.61%), Query Frame = 0
Query: 1 MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWR 60
MLNMTTLLTSFVQG +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWR
Sbjct: 54 MLNMTTLLTSFVQGTPLKVTKCGVCRLVGHPNDKCPEVIEDVNIVRKYDPYGNTYNSGWR 113
Query: 61 DNPNLRWGNNNEQPTQATSTSNNQGSNLEDLVKAFATNTIFFQNEMKQQMSQLKNAISKL 120
DNPNLRWGN+N++ TQA TS+NQG+NLED++KA ATNT+ FQ EMKQQM+QL AISK+
Sbjct: 114 DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKM 173
Query: 121 EGKGKLPAQPDHANVSAISLRSGKILQPPPSEEK 155
+GKGKLPAQPD+ANVSAISLRSGKIL P ++EK
Sbjct: 174 DGKGKLPAQPDYANVSAISLRSGKILDTPTTKEK 207
BLAST of PI0007585 vs. NCBI nr
Match:
TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 243.8 bits (621), Expect = 9.8e-61
Identity = 114/154 (74.03%), Postives = 134/154 (87.01%), Query Frame = 0
Query: 1 MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWR 60
MLNMTTLLTSFVQG KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN GWR
Sbjct: 183 MLNMTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVRRYDPHGNTYNLGWR 242
Query: 61 DNPNLRWGNNNEQPTQATSTSNNQGSNLEDLVKAFATNTIFFQNEMKQQMSQLKNAISKL 120
D PNLRWGN+ + TQA STS+NQG+NLED++KA TNT+ FQ EMKQQM+QL AISK+
Sbjct: 243 DKPNLRWGNDKQNHTQAPSTSSNQGTNLEDIIKALTTNTLSFQQEMKQQMTQLTTAISKM 302
Query: 121 EGKGKLPAQPDHANVSAISLRSGKILQPPPSEEK 155
+GKGKLPAQPDHANVSAISLRSGKIL P ++EK
Sbjct: 303 DGKGKLPAQPDHANVSAISLRSGKILDTPTTKEK 336
BLAST of PI0007585 vs. NCBI nr
Match:
KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 242.7 bits (618), Expect = 2.2e-60
Identity = 113/154 (73.38%), Postives = 138/154 (89.61%), Query Frame = 0
Query: 1 MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWR 60
MLNMTTLLTSFVQG +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWR
Sbjct: 139 MLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWR 198
Query: 61 DNPNLRWGNNNEQPTQATSTSNNQGSNLEDLVKAFATNTIFFQNEMKQQMSQLKNAISKL 120
DNPNLRWGN+N++ TQA STS+NQG+NLED++KA ATNT+ FQ EMKQQM+QL AISK+
Sbjct: 199 DNPNLRWGNDNQKHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKM 258
Query: 121 EGKGKLPAQPDHANVSAISLRSGKILQPPPSEEK 155
+GKGKL AQ ++ANVSA+SLRSGKIL P ++EK
Sbjct: 259 DGKGKLSAQSNYANVSAVSLRSGKILDTPTTKEK 292
BLAST of PI0007585 vs. NCBI nr
Match:
TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 241.9 bits (616), Expect = 3.7e-60
Identity = 114/154 (74.03%), Postives = 136/154 (88.31%), Query Frame = 0
Query: 1 MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWR 60
MLNMTTLLTSFVQG KV KCGVCGL+GHPNDKCP ++E+ N++R+YDPH NTYN+GWR
Sbjct: 103 MLNMTTLLTSFVQGTPPKVTKCGVCGLVGHPNDKCPKVIEDVNIVRRYDPHSNTYNSGWR 162
Query: 61 DNPNLRWGNNNEQPTQATSTSNNQGSNLEDLVKAFATNTIFFQNEMKQQMSQLKNAISKL 120
DN NLRWGN+N++ TQA STS+NQG+NLED++KA ATNT+ FQ +MKQQM+QL AISK+
Sbjct: 163 DNLNLRWGNDNQKYTQAPSTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTAISKM 222
Query: 121 EGKGKLPAQPDHANVSAISLRSGKILQPPPSEEK 155
+GKGKLPAQPDHANVSAISLRSGKIL P ++EK
Sbjct: 223 DGKGKLPAQPDHANVSAISLRSGKILDTPTTKEK 256
BLAST of PI0007585 vs. NCBI nr
Match:
XP_008465649.1 (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])
HSP 1 Score: 241.5 bits (615), Expect = 4.9e-60
Identity = 112/154 (72.73%), Postives = 135/154 (87.66%), Query Frame = 0
Query: 1 MLNMTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWR 60
MLNMTTLLTSFVQG +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWR
Sbjct: 53 MLNMTTLLTSFVQGTALKVTKCGVCGLVGYPNDKCPKVIEDVNIVRRYDPHGNTYNLGWR 112
Query: 61 DNPNLRWGNNNEQPTQATSTSNNQGSNLEDLVKAFATNTIFFQNEMKQQMSQLKNAISKL 120
DNPNLRWGN+N++ TQA TS+NQG+NLED++KA ATNT+ FQ +MKQQM+QL ISK+
Sbjct: 113 DNPNLRWGNDNQKHTQAPPTSSNQGTNLEDIIKALATNTLSFQQKMKQQMTQLTTVISKM 172
Query: 121 EGKGKLPAQPDHANVSAISLRSGKILQPPPSEEK 155
+GKGKLPAQPDH NVSAISLRSGKIL P ++EK
Sbjct: 173 DGKGKLPAQPDHVNVSAISLRSGKILDTPTTKEK 206
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CFE7 | 4.7e-61 | 74.03 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| E5GBZ4 | 4.7e-61 | 74.03 | Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1 | [more] |
| A0A5D3CRR8 | 1.1e-60 | 73.38 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5D3CB46 | 1.8e-60 | 74.03 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A1S3CQU8 | 2.4e-60 | 72.73 | uncharacterized protein LOC103503291 OS=Cucumis melo OX=3656 GN=LOC103503291 PE=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| ADN33993.1 | 9.8e-61 | 74.03 | retrotransposon gag protein [Cucumis melo subsp. melo] | [more] |
| TYK10613.1 | 9.8e-61 | 74.03 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0047407.1 | 2.2e-60 | 73.38 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... | [more] |
| TYK07549.1 | 3.7e-60 | 74.03 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| XP_008465649.1 | 4.9e-60 | 72.73 | PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
