PI0007567 (gene) Melon (PI 482460) v1

Overview
NamePI0007567
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr07: 11922529 .. 11923056 (+)
RNA-Seq ExpressionPI0007567
SyntenyPI0007567
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAAAGCATGCCCTCACAATGACATTCCTGAATGCATATTGATGGAGGTGTTTTATTTTGGACTGAATAAGAGAACACAACAAACTACTAACGCTGTGTTTGTAGGGGGAATGCTGAAGAGGTCCTACAACCAGATAAAGGCGACGTTAAACTCTATGACCAGCAACAATGAAGAATGGGATGAAGATGATTTCGGTTCTCGTAGAGGAGGAAGAGAAAGAAGTGAGGAAGGATTGGATAAGAACGTTGTGGTAGCGTTACAAGGCCAGATGACTGCGATGGACAATTTGCTAAAATCGATGGTGATTTCGCAAGTTAACGCTGCGAGTAGCTCAATTCAGGTGGTGAATCAGGTGGACGATATGGGATGTGTGGGATGCAGCAATCCTTACAACACTGACGCATGTCCACTTAATACAGAAACTGTCGCGTACATCAGGAATGACCCCTACTCGAACAAATACAACTCTGGTTTGAAAAACCACCCTAATTTTGGGTGGGGAGGAACAGGTCAACAAAATTAA

mRNA sequence

ATGTTAAAAGCATGCCCTCACAATGACATTCCTGAATGCATATTGATGGAGGTGTTTTATTTTGGACTGAATAAGAGAACACAACAAACTACTAACGCTGTGTTTGTAGGGGGAATGCTGAAGAGGTCCTACAACCAGATAAAGGCGACGTTAAACTCTATGACCAGCAACAATGAAGAATGGGATGAAGATGATTTCGGTTCTCGTAGAGGAGGAAGAGAAAGAAGTGAGGAAGGATTGGATAAGAACGTTGTGGTAGCGTTACAAGGCCAGATGACTGCGATGGACAATTTGCTAAAATCGATGGTGATTTCGCAAGTTAACGCTGCGAGTAGCTCAATTCAGGTGGTGAATCAGGTGGACGATATGGGATGTGTGGGATGCAGCAATCCTTACAACACTGACGCATGTCCACTTAATACAGAAACTGTCGCGTACATCAGGAATGACCCCTACTCGAACAAATACAACTCTGGTTTGAAAAACCACCCTAATTTTGGGTGGGGAGGAACAGGTCAACAAAATTAA

Coding sequence (CDS)

ATGTTAAAAGCATGCCCTCACAATGACATTCCTGAATGCATATTGATGGAGGTGTTTTATTTTGGACTGAATAAGAGAACACAACAAACTACTAACGCTGTGTTTGTAGGGGGAATGCTGAAGAGGTCCTACAACCAGATAAAGGCGACGTTAAACTCTATGACCAGCAACAATGAAGAATGGGATGAAGATGATTTCGGTTCTCGTAGAGGAGGAAGAGAAAGAAGTGAGGAAGGATTGGATAAGAACGTTGTGGTAGCGTTACAAGGCCAGATGACTGCGATGGACAATTTGCTAAAATCGATGGTGATTTCGCAAGTTAACGCTGCGAGTAGCTCAATTCAGGTGGTGAATCAGGTGGACGATATGGGATGTGTGGGATGCAGCAATCCTTACAACACTGACGCATGTCCACTTAATACAGAAACTGTCGCGTACATCAGGAATGACCCCTACTCGAACAAATACAACTCTGGTTTGAAAAACCACCCTAATTTTGGGTGGGGAGGAACAGGTCAACAAAATTAA

Protein sequence

MLKACPHNDIPECILMEVFYFGLNKRTQQTTNAVFVGGMLKRSYNQIKATLNSMTSNNEEWDEDDFGSRRGGRERSEEGLDKNVVVALQGQMTAMDNLLKSMVISQVNAASSSIQVVNQVDDMGCVGCSNPYNTDACPLNTETVAYIRNDPYSNKYNSGLKNHPNFGWGGTGQQN
Homology
BLAST of PI0007567 vs. ExPASy TrEMBL
Match: A0A5D3CC26 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00270 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 3.4e-44
Identity = 91/157 (57.96%), Postives = 121/157 (77.07%), Query Frame = 0

Query: 1   MLKACPHNDIPECILMEVFYFGLNKRTQQTTNAVFVGGMLKRSYNQIKATLNSMTSNNEE 60
           M+K CPH+ IPEC+LME FYFGL+K T Q+ N VF GGML+ SYNQIK  L++M SN++E
Sbjct: 21  MIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLRSSYNQIKNMLDTMASNSQE 80

Query: 61  WDEDDFGSR------RGGRERSEEGLDKNVVVALQGQMTAMDNLLKSMVISQVNAASSSI 120
           W ++ FGSR      +G R R E+G+D +++VALQGQ+  M N+L+SM + QVN   SS+
Sbjct: 81  WRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEM-NILQSMALLQVNVVRSSV 140

Query: 121 QVVNQVDDMGCVGCSNPYNTDACPLNTETVAYIRNDP 152
           Q+V QV++MGCVGC  P+NT+ACPLNTE VAY++NDP
Sbjct: 141 QMVQQVNEMGCVGCRAPHNTNACPLNTEIVAYLKNDP 176

BLAST of PI0007567 vs. ExPASy TrEMBL
Match: A0A5D3CSC7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1610G00360 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 7.7e-36
Identity = 79/124 (63.71%), Postives = 97/124 (78.23%), Query Frame = 0

Query: 43  SYNQIKATLNSMTSNNEEWDEDDFGSRRGGRERSEEGLDKNVVVALQGQMTAMDNLLKSM 102
           SYNQI  TL+S+  NNEEWD+D F S RGGR ++EEGLD+NV+V  QGQMTAM+NLL+ M
Sbjct: 26  SYNQINETLDSIAINNEEWDDDGFDSHRGGRGKNEEGLDRNVMVVPQGQMTAMNNLLQLM 85

Query: 103 VISQVNAASSSIQVVNQVDDMGCVGCSNPYNTDACPLNTETVAYIRNDPYSNKYNSGLKN 162
           V  QVNAASSS Q V QVD++GC+   +P+  DACPLN E VAY+++DPYSN YN   +N
Sbjct: 86  VFLQVNAASSSFQSVKQVDEIGCMRFGSPHKIDACPLNIEIVAYVKHDPYSNTYNPRWRN 145

Query: 163 HPNF 167
           HPNF
Sbjct: 146 HPNF 149

BLAST of PI0007567 vs. ExPASy TrEMBL
Match: A0A0A0K6F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.7e-33
Identity = 77/121 (63.64%), Postives = 99/121 (81.82%), Query Frame = 0

Query: 1   MLKACPHNDIPECILMEVFYFGLNKRTQQTTNAVFVGGMLKRSYNQIKATLNSMTSNNEE 60
           ++KACP + IPEC+ MEVFYFGL+K T Q  N +FVGGML+ SYNQIKATL+SM++N++E
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  WDEDDFGSRRGGRERSEEGLDKNVVVALQGQMTAMDNLLKSMVISQVNAASSSIQVVNQV 120
           WD+  FGSR  G  R++EGLDK+VVV LQGQM AM+NLL+SM +SQVNAA++ I  V QV
Sbjct: 81  WDDIGFGSRHRG--RTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYIHAVKQV 139

Query: 121 D 122
           +
Sbjct: 141 N 139

BLAST of PI0007567 vs. ExPASy TrEMBL
Match: A0A5A7UTC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76994G00070 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.6e-25
Identity = 57/91 (62.64%), Postives = 68/91 (74.73%), Query Frame = 0

Query: 85  VVALQGQMTAMDNLLKSMVISQVNAASSSIQVVNQVDDMGCVGCSNPYNTDACPLNTETV 144
           +VALQGQ+T M  LL+SMV++QVN  SSS+ VV  V +M CVGCS  YNTD CP NT+ +
Sbjct: 1   MVALQGQVTEMSKLLQSMVLAQVNVVSSSVHVVKHVAEMDCVGCSGSYNTDVCPFNTKMI 60

Query: 145 AYIRNDPYSNKYNSGLKNHPNFGWGGTGQQN 176
            Y +NDPYSN YN G +NH NF WGGTGQ N
Sbjct: 61  TYAKNDPYSNTYNGGWRNHSNFSWGGTGQDN 91

BLAST of PI0007567 vs. ExPASy TrEMBL
Match: A0A5D3D2S0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00800 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.1e-25
Identity = 62/121 (51.24%), Postives = 88/121 (72.73%), Query Frame = 0

Query: 39  MLKRSYNQIKATLNSMTSNNEEWDEDDFGSRRGGRERSEEGLDKNVVVALQGQMTAMDNL 98
           ML+ SY QIK TL+++T+N++E  +DD   +   R R++ G+D+NV+VALQGQ+T M  L
Sbjct: 1   MLQSSYYQIKTTLDAITNNSQELRDDDLRLQHESRGRTDAGMDRNVIVALQGQVTKMKKL 60

Query: 99  LKSMVISQVNAASSSIQVVNQVDDMGCVGCSNPYNTDACPLNTETVAYIRNDPYSNKYNS 158
           L+SM +SQV+A  + +Q V QVD+M  VGC  P+ TDAC LN E  AY+++ PYSN YN+
Sbjct: 61  LQSMALSQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNA 120

Query: 159 G 160
           G
Sbjct: 121 G 121

BLAST of PI0007567 vs. NCBI nr
Match: KAA0048713.1 (hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916.1 hypothetical protein E5676_scaffold265G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 7.1e-44
Identity = 91/157 (57.96%), Postives = 121/157 (77.07%), Query Frame = 0

Query: 1   MLKACPHNDIPECILMEVFYFGLNKRTQQTTNAVFVGGMLKRSYNQIKATLNSMTSNNEE 60
           M+K CPH+ IPEC+LME FYFGL+K T Q+ N VF GGML+ SYNQIK  L++M SN++E
Sbjct: 21  MIKRCPHHCIPECVLMEQFYFGLSKNTLQSANIVFTGGMLRSSYNQIKNMLDTMASNSQE 80

Query: 61  WDEDDFGSR------RGGRERSEEGLDKNVVVALQGQMTAMDNLLKSMVISQVNAASSSI 120
           W ++ FGSR      +G R R E+G+D +++VALQGQ+  M N+L+SM + QVN   SS+
Sbjct: 81  WRDESFGSRNDSRGTKGNRGRIEDGIDMSIMVALQGQVIEM-NILQSMALLQVNVVRSSV 140

Query: 121 QVVNQVDDMGCVGCSNPYNTDACPLNTETVAYIRNDP 152
           Q+V QV++MGCVGC  P+NT+ACPLNTE VAY++NDP
Sbjct: 141 QMVQQVNEMGCVGCRAPHNTNACPLNTEIVAYLKNDP 176

BLAST of PI0007567 vs. NCBI nr
Match: KAA0038192.1 (hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa] >TYK14793.1 hypothetical protein E5676_scaffold1610G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-35
Identity = 79/124 (63.71%), Postives = 97/124 (78.23%), Query Frame = 0

Query: 43  SYNQIKATLNSMTSNNEEWDEDDFGSRRGGRERSEEGLDKNVVVALQGQMTAMDNLLKSM 102
           SYNQI  TL+S+  NNEEWD+D F S RGGR ++EEGLD+NV+V  QGQMTAM+NLL+ M
Sbjct: 26  SYNQINETLDSIAINNEEWDDDGFDSHRGGRGKNEEGLDRNVMVVPQGQMTAMNNLLQLM 85

Query: 103 VISQVNAASSSIQVVNQVDDMGCVGCSNPYNTDACPLNTETVAYIRNDPYSNKYNSGLKN 162
           V  QVNAASSS Q V QVD++GC+   +P+  DACPLN E VAY+++DPYSN YN   +N
Sbjct: 86  VFLQVNAASSSFQSVKQVDEIGCMRFGSPHKIDACPLNIEIVAYVKHDPYSNTYNPRWRN 145

Query: 163 HPNF 167
           HPNF
Sbjct: 146 HPNF 149

BLAST of PI0007567 vs. NCBI nr
Match: KGN44484.1 (hypothetical protein Csa_015918 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 5.6e-33
Identity = 77/121 (63.64%), Postives = 99/121 (81.82%), Query Frame = 0

Query: 1   MLKACPHNDIPECILMEVFYFGLNKRTQQTTNAVFVGGMLKRSYNQIKATLNSMTSNNEE 60
           ++KACP + IPEC+ MEVFYFGL+K T Q  N +FVGGML+ SYNQIKATL+SM++N++E
Sbjct: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80

Query: 61  WDEDDFGSRRGGRERSEEGLDKNVVVALQGQMTAMDNLLKSMVISQVNAASSSIQVVNQV 120
           WD+  FGSR  G  R++EGLDK+VVV LQGQM AM+NLL+SM +SQVNAA++ I  V QV
Sbjct: 81  WDDIGFGSRHRG--RTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYIHAVKQV 139

Query: 121 D 122
           +
Sbjct: 141 N 139

BLAST of PI0007567 vs. NCBI nr
Match: KAA0058408.1 (uncharacterized protein E6C27_scaffold409G001200 [Cucumis melo var. makuwa] >TYK04705.1 uncharacterized protein E5676_scaffold76994G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 7.4e-25
Identity = 57/91 (62.64%), Postives = 68/91 (74.73%), Query Frame = 0

Query: 85  VVALQGQMTAMDNLLKSMVISQVNAASSSIQVVNQVDDMGCVGCSNPYNTDACPLNTETV 144
           +VALQGQ+T M  LL+SMV++QVN  SSS+ VV  V +M CVGCS  YNTD CP NT+ +
Sbjct: 1   MVALQGQVTEMSKLLQSMVLAQVNVVSSSVHVVKHVAEMDCVGCSGSYNTDVCPFNTKMI 60

Query: 145 AYIRNDPYSNKYNSGLKNHPNFGWGGTGQQN 176
            Y +NDPYSN YN G +NH NF WGGTGQ N
Sbjct: 61  TYAKNDPYSNTYNGGWRNHSNFSWGGTGQDN 91

BLAST of PI0007567 vs. NCBI nr
Match: KAA0040852.1 (hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK17828.1 hypothetical protein E5676_scaffold306G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-24
Identity = 62/121 (51.24%), Postives = 88/121 (72.73%), Query Frame = 0

Query: 39  MLKRSYNQIKATLNSMTSNNEEWDEDDFGSRRGGRERSEEGLDKNVVVALQGQMTAMDNL 98
           ML+ SY QIK TL+++T+N++E  +DD   +   R R++ G+D+NV+VALQGQ+T M  L
Sbjct: 1   MLQSSYYQIKTTLDAITNNSQELRDDDLRLQHESRGRTDAGMDRNVIVALQGQVTKMKKL 60

Query: 99  LKSMVISQVNAASSSIQVVNQVDDMGCVGCSNPYNTDACPLNTETVAYIRNDPYSNKYNS 158
           L+SM +SQV+A  + +Q V QVD+M  VGC  P+ TDAC LN E  AY+++ PYSN YN+
Sbjct: 61  LQSMALSQVDAVGNYVQAVKQVDEMRPVGCGEPHTTDACLLNAEIAAYVKSYPYSNTYNA 120

Query: 159 G 160
           G
Sbjct: 121 G 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CC263.4e-4457.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CSC77.7e-3663.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K6F92.7e-3363.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G307410 PE=4 SV=1[more]
A0A5A7UTC13.6e-2562.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D2S06.1e-2551.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0048713.17.1e-4457.96hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa] >TYK07916... [more]
KAA0038192.11.6e-3563.71hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa] >TYK1479... [more]
KGN44484.15.6e-3363.64hypothetical protein Csa_015918 [Cucumis sativus][more]
KAA0058408.17.4e-2562.64uncharacterized protein E6C27_scaffold409G001200 [Cucumis melo var. makuwa] >TYK... [more]
KAA0040852.11.3e-2451.24hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa] >TYK1782... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0007567.1PI0007567.1mRNA