PI0007549 (gene) Melon (PI 482460) v1

Overview
NamePI0007549
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Locationchr02: 12326165 .. 12327777 (-)
RNA-Seq ExpressionPI0007549
SyntenyPI0007549
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAGAAGATAGTGAAACATCAGATGATAGCGATGAAAAAAAAATATGAAGAGGGGAAACAAAACAAAACAAAGCCAATACCAATACCAATTGGTAAATATTGTAATATTGCACTATTAACGTGTCTATGTAAGAACAATAAATAACTATCATTACCTACCATTCATTGTTCTTGTTATTAACTCCAATAATTTTTTGCATCAAGTCATTGAAGAAAGAAAAATAGAAAAAGAGGATGAGAGAGTTAAAGGGGAGCAAAATCAAGAAGATTCAAATATTGATAGTGAAGGAATTTTGTTTACAACAAAAAGAAGACAAAAGGGGAAAGAAGTTGTTGATGTTGATGATAATGAAACTGAAGAAGGGATTGATAGTGATAGTAGTCAAGAAAATGAAGAAGAAGAAATAGAAACACAAGGAAGCAAAAGAAAAAACAAGAAAAAGCAAAAGGTAGAAAATGGTGGGGACCGAAAAAAGCCAAAGGTTTCAAACATGATATGGAGACAACCAATCTCAAAACAAGAAGAAACAAACAAGAAGAAAGAAAGAAGAATTTCAACTCAAGAATACATTGATTATGCTCCATCCTTTGACTTACACATTTCTCAATAGTTGTACAAAACAATCTATAGTGTGTGTAAAGCTTCAAGTTTGTAAATTTTAACTTTTAACAATTTCTTTTTATTATATTTTGTTAATTTGTAAATTTCTAAGTTTCTTATTAAATCTGATCTTTGCGCTTTCAAACTATTTCCACTTTACATTTTAGAGCCTCAAATACACAAACACATAGATAAAATACTACCAATGACTATTCCTTGACATCCAACACAATCGTGTAAAATGTATAACATGATTGTTTAGATATACTAGCATGATCGCTTAGATCGTCGTTTAGATATACGAGAATGATCGTTTAGATCATTTTCAATTAATTACACGATCGTTTATATGTTACTAGAAGATCGTTTACAAGCACGATCATTTAGATCATTTTTAATTAACTACATGATCGTTTATACGTTATTAGAAGATCGTTTACATATAATGACAATATCGTTACTAAAAGTGATTTAAGAATCTAGAAATAATCAATTCGCATTTATGTTCAATACGTGTGTTGGAAATAACCAATTTGCATTTATTAACCTATCGGTACAGTCCCTTCATTTTTCTTTAAAACTCGTACTCTCAAACAATTATGTTTAGGGTTTTAATTTTTTCCAAACCTCTCTTCTCAAACATATTCAGTCCTATCATCTTCCTCTTAAAGAAGTACGTGATTTTCAGAAACAATGTGCAAGATGCTGCTATTTGGACCAAGAACAAAAAGATCCAGAAGGAAAAGAAAAAACGTGCAAGATGTTATGATGGGCAAGATGTGAAGGTTGGCTTTGCCCTCTTTATTGAAATTGTGATGGTGATTCTGAATATGTTTACAAAAGACTATAGTAAGATCTTATCAACTTCCTTGATTTCGAAGCCTCTTCCGAATCCAGATGGAAGGGAATGGAAGGTGGGTTTGACAAAGGAAGATAACGACGTTGTTTGGCTGCAAAAAGGATGGGGTCTTAGAACACTAGAACCCATTCTTCTGCAGTATCAATGA

mRNA sequence

ATGAACAAGAAGATAGTGAAACATCAGATGATAGCGATGAAAAAAAAATATGAAGAGGGGAAACAAAACAAAACAAAGCCAATACCAATACCAATTGTCATTGAAGAAAGAAAAATAGAAAAAGAGGATGAGAGAGTTAAAGGGGAGCAAAATCAAGAAGATTCAAATATTGATAGTGAAGGAATTTTGTTTACAACAAAAAGAAGACAAAAGGGGAAAGAAGTTGTTGATGTTGATGATAATGAAACTGAAGAAGGGATTGATAGTGATAGTAGTCAAGAAAATGAAGAAGAAGAAATAGAAACACAAGGAAGCAAAAGAAAAAACAAGAAAAAGCAAAAGAAGTACGTGATTTTCAGAAACAATGTGCAAGATGCTGCTATTTGGACCAAGAACAAAAAGATCCAGAAGGAAAAGAAAAAACGTGCAAGATGTTATGATGGGCAAGATGTGAAGGTTGGCTTTGCCCTCTTTATTGAAATTGTGATGGTGATTCTGAATATGTTTACAAAAGACTATAGTAAGATCTTATCAACTTCCTTGATTTCGAAGCCTCTTCCGAATCCAGATGGAAGGGAATGGAAGGTGGGTTTGACAAAGGAAGATAACGACGTTGTTTGGCTGCAAAAAGGATGGGGTCTTAGAACACTAGAACCCATTCTTCTGCAGTATCAATGA

Coding sequence (CDS)

ATGAACAAGAAGATAGTGAAACATCAGATGATAGCGATGAAAAAAAAATATGAAGAGGGGAAACAAAACAAAACAAAGCCAATACCAATACCAATTGTCATTGAAGAAAGAAAAATAGAAAAAGAGGATGAGAGAGTTAAAGGGGAGCAAAATCAAGAAGATTCAAATATTGATAGTGAAGGAATTTTGTTTACAACAAAAAGAAGACAAAAGGGGAAAGAAGTTGTTGATGTTGATGATAATGAAACTGAAGAAGGGATTGATAGTGATAGTAGTCAAGAAAATGAAGAAGAAGAAATAGAAACACAAGGAAGCAAAAGAAAAAACAAGAAAAAGCAAAAGAAGTACGTGATTTTCAGAAACAATGTGCAAGATGCTGCTATTTGGACCAAGAACAAAAAGATCCAGAAGGAAAAGAAAAAACGTGCAAGATGTTATGATGGGCAAGATGTGAAGGTTGGCTTTGCCCTCTTTATTGAAATTGTGATGGTGATTCTGAATATGTTTACAAAAGACTATAGTAAGATCTTATCAACTTCCTTGATTTCGAAGCCTCTTCCGAATCCAGATGGAAGGGAATGGAAGGTGGGTTTGACAAAGGAAGATAACGACGTTGTTTGGCTGCAAAAAGGATGGGGTCTTAGAACACTAGAACCCATTCTTCTGCAGTATCAATGA

Protein sequence

MNKKIVKHQMIAMKKKYEEGKQNKTKPIPIPIVIEERKIEKEDERVKGEQNQEDSNIDSEGILFTTKRRQKGKEVVDVDDNETEEGIDSDSSQENEEEEIETQGSKRKNKKKQKKYVIFRNNVQDAAIWTKNKKIQKEKKKRARCYDGQDVKVGFALFIEIVMVILNMFTKDYSKILSTSLISKPLPNPDGREWKVGLTKEDNDVVWLQKGWGLRTLEPILLQYQ
Homology
[Close]
BLAST of PI0007549 vs. ExPASy TrEMBL
Match: A0A0A0LW59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181490 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-10
Identity = 52/93 (55.91%), Postives = 65/93 (69.89%), Query Frame = 0 

Query: 6  VKHQMIAMKKKYEEGKQNKTKPIPIPIVIEERKIEKEDERVKGEQNQEDSNIDSEGILFT 65
          +KH M  MKK+    K  + +      +IEE+K+EKEDE VK EQNQED + +SE ILFT
Sbjct: 1  MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT 60

Query: 66 TKRRQKGKEVVDVDDNETEEGIDSDSSQENEEE 99
           +RRQKGK VVD DD+ETEE I SDS ++ EEE
Sbjct: 61 IRRRQKGKLVVD-DDDETEEEIASDSEEDAEEE 92

[Close]
BLAST of PI0007549 vs. ExPASy TrEMBL
Match: A0A5D3C119 (B3 domain-containing transcription factor VRN1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001830 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 151 VKVGFALFIEIVMVILNMFTKDYSKILSTSLISKPLPNPDGREWKVGLTKEDNDVVWLQK 210
           VKV    FI+ VM+IL MF KD+ K+LS  +I   L   +GREWK GLTK DND VWLQK
Sbjct: 21  VKVALTFFIKTVMMILKMFIKDHGKLLSCFMIIVLL---NGREWKAGLTKVDNDGVWLQK 77

[Close]
BLAST of PI0007549 vs. ExPASy TrEMBL
Match: A0A0A0KL64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489970 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-06
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 163 MVILNMFTKDYSKILSTSLISKPLPNPDGREWKVGLTKEDNDVVWLQKGW 213
           ++I  MF K Y K+LS+S+I   L  PDGREWK+GLT  DN  VWL+KGW
Sbjct: 21  LMIPRMFIKSYGKLLSSSVI---LKLPDGREWKIGLTTSDNGAVWLEKGW 67

[Close]
BLAST of PI0007549 vs. ExPASy TrEMBL
Match: A0A5D3CM75 (B3 domain-containing transcription factor VRN1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005160 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-06
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 0 

Query: 163 MVILNMFTKDYSKILSTSLISKPLPNPDGREWKVGLTKEDNDVVWLQKGW 213
           ++I  MF KDY K LS  +I   L  PDGREWKVGLT  DN  VWLQ+GW
Sbjct: 21  LMIPRMFIKDYGKFLSNFVI---LELPDGREWKVGLTWRDNGSVWLQEGW 67

[Close]
BLAST of PI0007549 vs. ExPASy TrEMBL
Match: A0A6J1KQQ1 (B3 domain-containing transcription factor VRN1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496775 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 9.0e-05
Identity = 28/50 (56.00%), Postives = 33/50 (66.00%), Query Frame = 0 

Query: 163 MVILNMFTKDYSKILSTSLISKPLPNPDGREWKVGLTKEDNDVVWLQKGW 213
           ++I   F KDY ++LSTS+    L  PDG EWKVGLT   N VVWLQ GW
Sbjct: 22  LMIPKKFVKDYGELLSTSV---RLKLPDGMEWKVGLTTAPNGVVWLQNGW 68

[Close]
BLAST of PI0007549 vs. NCBI nr
Match: KAE8652864.1 (hypothetical protein Csa_013007, partial [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-08
Identity = 46/82 (56.10%), Postives = 57/82 (69.51%), Query Frame = 0 

Query: 6  VKHQMIAMKKKYEEGKQNKTKPIPIPIVIEERKIEKEDERVKGEQNQEDSNIDSEGILFT 65
          +KH M  MKK+    K  + +      +IEE+K+EKEDE VK EQNQED + +SE ILFT
Sbjct: 1  MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT 60

Query: 66 TKRRQKGKEVVDVDDNETEEGI 88
           +RRQKGK VVD DD+ETEE I
Sbjct: 61 IRRRQKGKLVVD-DDDETEEEI 81

[Close]
BLAST of PI0007549 vs. NCBI nr
Match: KAE8637350.1 (hypothetical protein CSA_011900, partial [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-07
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 33 VIEERKIEKEDERVKGEQNQEDSNIDSEGILFTTKRRQKGKEVVDVDDNETEEGI 88
          +IEE+K+EKEDE VK EQNQED + +SE ILFT +RRQKGK VVD DD+ETEE I
Sbjct: 2  IIEEKKLEKEDEEVKEEQNQEDIDNESEEILFTIRRRQKGKLVVD-DDDETEEEI 55

[Close]
BLAST of PI0007549 vs. NCBI nr
Match: TYK04964.1 (B3 domain-containing transcription factor VRN1-like [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-07
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 151 VKVGFALFIEIVMVILNMFTKDYSKILSTSLISKPLPNPDGREWKVGLTKEDNDVVWLQK 210
           VKV    FI+ VM+IL MF KD+ K+LS  +I   L   +GREWK GLTK DND VWLQK
Sbjct: 21  VKVALTFFIKTVMMILKMFIKDHGKLLSCFMIIVLL---NGREWKAGLTKVDNDGVWLQK 77

[Close]
BLAST of PI0007549 vs. NCBI nr
Match: KAE8647490.1 (hypothetical protein Csa_003352 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-06
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 163 MVILNMFTKDYSKILSTSLISKPLPNPDGREWKVGLTKEDNDVVWLQKGW 213
           ++I  MF K Y K+LS+S+I   L  PDGREWK+GLT  DN  VWL+KGW
Sbjct: 21  LMIPRMFIKSYGKLLSSSVI---LKLPDGREWKIGLTTSDNGAVWLEKGW 67

[Close]
BLAST of PI0007549 vs. NCBI nr
Match: XP_031742404.1 (B3 domain-containing transcription factor VRN1 isoform X2 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-06
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 163 MVILNMFTKDYSKILSTSLISKPLPNPDGREWKVGLTKEDNDVVWLQKGW 213
           ++I  MF K Y K+LS+S+I   L  PDGREWK+GLT  DN  VWL+KGW
Sbjct: 21  LMIPRMFIKSYGKLLSSSVI---LKLPDGREWKIGLTTSDNGAVWLEKGW 67

The following BLAST results are available for this feature:
BLAST of PI0007549 vs.
Match NameE-valueIdentityDescription
BLAST of PI0007549 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW591.9e-1055.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181490 PE=4 SV=1[more]
A0A5D3C1191.9e-0758.33B3 domain-containing transcription factor VRN1-like OS=Cucumis melo var. makuwa ... [more]
A0A0A0KL641.3e-0658.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489970 PE=4 SV=1[more]
A0A5D3CM758.2e-0660.00B3 domain-containing transcription factor VRN1-like isoform X2 OS=Cucumis melo v... [more]
A0A6J1KQQ19.0e-0556.00B3 domain-containing transcription factor VRN1-like isoform X1 OS=Cucurbita maxi... [more]
BLAST of PI0007549 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652864.12.1e-0856.10hypothetical protein Csa_013007, partial [Cucumis sativus][more]
KAE8637350.14.0e-0770.91hypothetical protein CSA_011900, partial [Cucumis sativus][more]
TYK04964.14.0e-0758.33B3 domain-containing transcription factor VRN1-like [Cucumis melo var. makuwa][more]
KAE8647490.12.6e-0658.00hypothetical protein Csa_003352 [Cucumis sativus][more]
XP_031742404.12.6e-0658.00B3 domain-containing transcription factor VRN1 isoform X2 [Cucumis sativus][more]
BLAST of PI0007549 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 32..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..54
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0007549.1PI0007549.1mRNA