Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAATCCGATCCTTCGCCATTCGCCAGGTATGTCTCACGACTGATCATTATGAATTATGTTTTAACCTTGCCTAAGTTAAACTAGAGTTTTGAAAGTGCCTTAAGATGTGTTACTAAGAGAACTGTTGGTGGATGTTAGGAAGCATGTCGCCTAGGAGAGGAGCACGAGGTCGTGGTCGGGGCCGTGGAGCAGGGCGTGGCCAGCCTACGGAGGACCTCGTAGGCCAGGGTGTCCCCACTACACCAGTCACCTATGCAGATCTGGCTGCTCTGTTGGTGCGTTTGGAGCATAGGTTTGTCGACATTCTTACGACCATTTTGACACAGAGTCTACTGTTCAGCAACAGCAGCGTTACGTACCTGACCAGTTGTCTGCAAAGGCAAAACACCACAGGATGATCCTTGTAGAGCAGAGCTATGGTTGTCCTCTGTGGAGACCGTTTTCCGCTATATGAGGTGCCCTGAGGACCAGAAGGTCCAGTGTGCAGTTTTCCTCTTGAGGGACAGAGGTGTGGTGTGGTGGCATTCTGCTGAGAGGATGCTTGGTGGCGATGTGAGCCAGATTACTTGGAGCCAGTTCAAGGAGAGCTTTTATGACAAGTTCTTCTCCGCGAACCTTAAAGACGTCAAGCGCCAGGAATTCTTGGACTTGAAGCAGGGTTCAGTGTCAGTGGAGGAGTACGATCAGGAGTTTCATATGTTGTCCCGCTTCGCTCCTGAGTTGGTGGACACGAAGCGTGCCCGGGCCGAGAGGTTTGTTAGGGGTTTGAGGAGCGACATCCGTGGTTTCGTCAGGGCTTTTAAGCCAGCCACCCAGGCTGCGGCACTGCGTCTGGCAGTGGACATGAGCGTGAAGGAGGATGATGCTCCACTGAAGTCCTCTAGTAAGGGGGCATCATCTGGTTGGAAGAGAAAGACGGAGCAGCCGCCAGTTGAGGTTCCTCAGAGGAACCTGAGGCCAAGTGGAGACTTCCGCCGTTTTCAGCAGGGTCCTGCAGAGGCAAGAGTGGTCATCAGAGATAGACCTCTTTGTACCTCGTGA
mRNA sequence
ATGACCAATCCGATCCTTCGCCATTCGCCAGGAAGCATGTCGCCTAGGAGAGGAGCACGAGGTCGTGGTCGGGGCCGTGGAGCAGGGCGTGGCCAGCCTACGGAGGACCTCGTAGGCCAGGGTGTCCCCACTACACCAGTCACCTATGCAGATCTGGCTGCTCTGTTGGTGCGTTTGGAGCATAGAGCAGAGCTATGGTTGTCCTCTGTGGAGACCGTTTTCCGCTATATGAGGTGCCCTGAGGACCAGAAGGTCCAGTGTGCAGTTTTCCTCTTGAGGGACAGAGGTGTGGTGTGGTGGCATTCTGCTGAGAGGATGCTTGGTGGCGATGTGAGCCAGATTACTTGGAGCCAGTTCAAGGAGAGCTTTTATGACAAGTTCTTCTCCGCGAACCTTAAAGACGTCAAGCGCCAGGAATTCTTGGACTTGAAGCAGGGTTCAGTGTCAGTGGAGGAGTACGATCAGGAGTTTCATATGTTGTCCCGCTTCGCTCCTGAGTTGGTGGACACGAAGCGTGCCCGGGCCGAGAGGTTTGTTAGGGGTTTGAGGAGCGACATCCGTGGTTTCGTCAGGGCTTTTAAGCCAGCCACCCAGGCTGCGGCACTGCGTCTGGCAGTGGACATGAGCGTGAAGGAGGATGATGCTCCACTGAAGTCCTCTAGTAAGGGGGCATCATCTGGTTGGAAGAGAAAGACGGAGCAGCCGCCAGTTGAGGTTCCTCAGAGGAACCTGAGGCCAAGTGGAGACTTCCGCCGTTTTCAGCAGGGTCCTGCAGAGGCAAGAGTGGTCATCAGAGATAGACCTCTTTGTACCTCGTGA
Coding sequence (CDS)
ATGACCAATCCGATCCTTCGCCATTCGCCAGGAAGCATGTCGCCTAGGAGAGGAGCACGAGGTCGTGGTCGGGGCCGTGGAGCAGGGCGTGGCCAGCCTACGGAGGACCTCGTAGGCCAGGGTGTCCCCACTACACCAGTCACCTATGCAGATCTGGCTGCTCTGTTGGTGCGTTTGGAGCATAGAGCAGAGCTATGGTTGTCCTCTGTGGAGACCGTTTTCCGCTATATGAGGTGCCCTGAGGACCAGAAGGTCCAGTGTGCAGTTTTCCTCTTGAGGGACAGAGGTGTGGTGTGGTGGCATTCTGCTGAGAGGATGCTTGGTGGCGATGTGAGCCAGATTACTTGGAGCCAGTTCAAGGAGAGCTTTTATGACAAGTTCTTCTCCGCGAACCTTAAAGACGTCAAGCGCCAGGAATTCTTGGACTTGAAGCAGGGTTCAGTGTCAGTGGAGGAGTACGATCAGGAGTTTCATATGTTGTCCCGCTTCGCTCCTGAGTTGGTGGACACGAAGCGTGCCCGGGCCGAGAGGTTTGTTAGGGGTTTGAGGAGCGACATCCGTGGTTTCGTCAGGGCTTTTAAGCCAGCCACCCAGGCTGCGGCACTGCGTCTGGCAGTGGACATGAGCGTGAAGGAGGATGATGCTCCACTGAAGTCCTCTAGTAAGGGGGCATCATCTGGTTGGAAGAGAAAGACGGAGCAGCCGCCAGTTGAGGTTCCTCAGAGGAACCTGAGGCCAAGTGGAGACTTCCGCCGTTTTCAGCAGGGTCCTGCAGAGGCAAGAGTGGTCATCAGAGATAGACCTCTTTGTACCTCGTGA
Protein sequence
MTNPILRHSPGSMSPRRGARGRGRGRGAGRGQPTEDLVGQGVPTTPVTYADLAALLVRLEHRAELWLSSVETVFRYMRCPEDQKVQCAVFLLRDRGVVWWHSAERMLGGDVSQITWSQFKESFYDKFFSANLKDVKRQEFLDLKQGSVSVEEYDQEFHMLSRFAPELVDTKRARAERFVRGLRSDIRGFVRAFKPATQAAALRLAVDMSVKEDDAPLKSSSKGASSGWKRKTEQPPVEVPQRNLRPSGDFRRFQQGPAEARVVIRDRPLCTS
Homology
BLAST of PI0007152 vs. ExPASy TrEMBL
Match:
A0A5A7T2B0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001620 PE=4 SV=1)
HSP 1 Score: 323.6 bits (828), Expect = 8.2e-85
Identity = 174/287 (60.63%), Postives = 211/287 (73.52%), Query Frame = 0
Query: 1 MTNPILRHSPGSMS--PRRGARGRGRGRGAGRGQPTEDLVGQGV-PTTPVTYADLAALLV 60
++ P+L H ++ P RG RG GRGRGAGR QP V Q P PVT+ADLAA+
Sbjct: 16 VSKPLLAHVSHILATCPPRGGRG-GRGRGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQ 75
Query: 61 R----------LEH--RAELWLSSVETVFRYMRCPEDQKVQCAVFLLRDRGVVWWHSAER 120
R LE RA++WLSS+ET+FRYM+CPEDQKVQCAVF+L DRG WW + ER
Sbjct: 76 RKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTER 135
Query: 121 MLGGDVSQITWSQFKESFYDKFFSANLKDVKRQEFLDLKQGSVSVEEYDQEFHMLSRFAP 180
MLGGDVSQITW QFKESFY KFFSA+L+D KRQEFL+L+QG ++VE+YD EF MLSRFAP
Sbjct: 136 MLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAP 195
Query: 181 ELVDTKRARAERFVRGLRSDIRGFVRAFKPATQAAALRLAVDMSVKEDDAPLKSSSKGAS 240
E++ T+ ARA++FVRGLR DI+G VRAF+PAT A ALRLAVD+S++E K++ KG++
Sbjct: 196 EMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGKGST 255
Query: 241 SGWKRKTEQPPVEVPQRNLRPSGDFRRFQQGPAEARVVIRDRPLCTS 273
SG KRK EQ PV VPQRN R G+FR FQQ P EA R PLCT+
Sbjct: 256 SGQKRKAEQQPVPVPQRNFRSGGEFRSFQQKPFEAGEAARGNPLCTT 301
BLAST of PI0007152 vs. ExPASy TrEMBL
Match:
A0A5A7TAY4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00010 PE=4 SV=1)
HSP 1 Score: 320.9 bits (821), Expect = 5.3e-84
Identity = 171/282 (60.64%), Postives = 208/282 (73.76%), Query Frame = 0
Query: 4 PILRHSPGSMSPRRGARGRGRGRGAGRGQPTEDLVGQGV-PTTPVTYADLAALLVR---- 63
P++R P RG RG GRGRGAGR QP V Q P PVT+A+LAA+ R
Sbjct: 136 PLVREMPPRRGAWRGGRG-GRGRGAGRVQPEVQPVAQASDPAAPVTHANLAAMEQRKYNP 195
Query: 64 ------LEH--RAELWLSSVETVFRYMRCPEDQKVQCAVFLLRDRGVVWWHSAERMLGGD 123
LE RA+LWLSS+ET+ RYM+CPEDQKVQCAVF+L DRG VWW + ERMLGGD
Sbjct: 196 TTFDGSLEDPTRAQLWLSSLETICRYMKCPEDQKVQCAVFMLTDRGTVWWETTERMLGGD 255
Query: 124 VSQITWSQFKESFYDKFFSANLKDVKRQEFLDLKQGSVSVEEYDQEFHMLSRFAPELVDT 183
VSQITW QFKESFY KFFSA+L+D KRQEFL+L+QG ++VE+YD EF MLSRFAPE++ T
Sbjct: 256 VSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIAT 315
Query: 184 KRARAERFVRGLRSDIRGFVRAFKPATQAAALRLAVDMSVKEDDAPLKSSSKGASSGWKR 243
+ A+A++FVRGLR DI+G VRAF+PAT ALRLAVD+S++E K++ +G++SG KR
Sbjct: 316 EAAKADKFVRGLRLDIQGLVRAFRPATHTDALRLAVDLSLQERANSSKTAGRGSTSGQKR 375
Query: 244 KTEQPPVEVPQRNLRPSGDFRRFQQGPAEARVVIRDRPLCTS 273
K EQ PV VPQRN R G+FRRFQQ P EA R +PLCT+
Sbjct: 376 KAEQQPVPVPQRNFRSGGEFRRFQQKPFEAGEAARGKPLCTT 416
BLAST of PI0007152 vs. ExPASy TrEMBL
Match:
A0A5A7UR62 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G001070 PE=4 SV=1)
HSP 1 Score: 318.5 bits (815), Expect = 2.6e-83
Identity = 170/281 (60.50%), Postives = 203/281 (72.24%), Query Frame = 0
Query: 5 ILRHSPGSMSPRRGARGRGRGRGAGRGQPTEDLVGQGV-PTTPVTYADLAALLVR----- 64
+ R P RRG RG GRGRGAGR QP V Q P PVT+ADLAA+ R
Sbjct: 59 VAREMPRRRGARRGGRG-GRGRGAGRVQPEVQPVAQATDPAAPVTHADLAAMEQRKYNPT 118
Query: 65 -----LEH--RAELWLSSVETVFRYMRCPEDQKVQCAVFLLRDRGVVWWHSAERMLGGDV 124
LE RA+LWLSS+ET+FRYM+CPEDQKVQCAVF+L DRG WW + ERMLGGDV
Sbjct: 119 TFDGSLEDPTRAQLWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDV 178
Query: 125 SQITWSQFKESFYDKFFSANLKDVKRQEFLDLKQGSVSVEEYDQEFHMLSRFAPELVDTK 184
SQITW QFKESFY KFF A+L+D KRQEFL+L+QG ++VE+YD EF MLSRFAPE++ T+
Sbjct: 179 SQITWQQFKESFYAKFFFASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATE 238
Query: 185 RARAERFVRGLRSDIRGFVRAFKPATQAAALRLAVDMSVKEDDAPLKSSSKGASSGWKRK 244
ARA++FVRGLR DI+ VRAF+PAT ALRLAVD+S++E K++ KG++S KRK
Sbjct: 239 AARADKFVRGLRLDIQSLVRAFRPATHVDALRLAVDLSLQERANSSKTAGKGSTSEQKRK 298
Query: 245 TEQPPVEVPQRNLRPSGDFRRFQQGPAEARVVIRDRPLCTS 273
EQ PV VPQRN R G+FRRFQQ P E R +PLCT+
Sbjct: 299 AEQQPVPVPQRNFRSGGEFRRFQQKPFEVGEAARGKPLCTT 338
BLAST of PI0007152 vs. ExPASy TrEMBL
Match:
A0A5A7TX64 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001220 PE=4 SV=1)
HSP 1 Score: 311.6 bits (797), Expect = 3.2e-81
Identity = 173/338 (51.18%), Postives = 209/338 (61.83%), Query Frame = 0
Query: 4 PILRHSPGSMSPRRGARGRGRGRGAGRGQPTEDLVGQGV-PTTPVTYADLAALLVRLEH- 63
P++R P RRG RG GRGRGAGR QP V Q P PVT+ADLAA+ R
Sbjct: 211 PLVREMPPRRGARRGGRG-GRGRGAGRVQPEVQPVAQAPDPVAPVTHADLAAMEQRFRDL 270
Query: 64 ------------------------------------------------------------ 123
Sbjct: 271 IMQMREQQKPASPTPAPAPAPAPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFD 330
Query: 124 -------RAELWLSSVETVFRYMRCPEDQKVQCAVFLLRDRGVVWWHSAERMLGGDVSQI 183
RA++WLSS+ET+FRYM+CPEDQKVQCAVF+L DRG WW + ERMLGGDVSQI
Sbjct: 331 GSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQI 390
Query: 184 TWSQFKESFYDKFFSANLKDVKRQEFLDLKQGSVSVEEYDQEFHMLSRFAPELVDTKRAR 243
TW QFKESFY KFFSA+L+D KRQEFL+L+QG ++VE+YD EF MLSRFAPE++ T+ AR
Sbjct: 391 TWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAAR 450
Query: 244 AERFVRGLRSDIRGFVRAFKPATQAAALRLAVDMSVKEDDAPLKSSSKGASSGWKRKTEQ 273
A++FVRGLR DI+G VRAF+PAT A ALRLAVD+S++E K++ +G++SG KRK EQ
Sbjct: 451 ADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQ 510
BLAST of PI0007152 vs. ExPASy TrEMBL
Match:
A0A5A7TB42 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold118G00260 PE=4 SV=1)
HSP 1 Score: 310.8 bits (795), Expect = 5.5e-81
Identity = 163/278 (58.63%), Postives = 197/278 (70.86%), Query Frame = 0
Query: 13 MSPRRGARGRGRGRGAGRGQPTEDLVGQGV-PTTPVTYADLAALLVRLEH---------- 72
M PRRGAR GRGRGAGR QP V + P PV L+A L
Sbjct: 157 MPPRRGARRGGRGRGAGRVQPEVQPVAKATDPAAPVVPDQLSAEAKHLRDFRKYNPTTFD 216
Query: 73 -------RAELWLSSVETVFRYMRCPEDQKVQCAVFLLRDRGVVWWHSAERMLGGDVSQI 132
RA+LWLSS+ET+FRYM+CPEDQKVQCAVF+L DRG WW + ERMLGGDVSQI
Sbjct: 217 GSLEDPTRAQLWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQI 276
Query: 133 TWSQFKESFYDKFFSANLKDVKRQEFLDLKQGSVSVEEYDQEFHMLSRFAPELVDTKRAR 192
W QFKESFY KFFSA+L+D +RQEFL+L+QG ++VE+YD EF MLS FAPE++ T+ AR
Sbjct: 277 MWQQFKESFYSKFFSASLRDAERQEFLNLEQGDMTVEQYDAEFDMLSHFAPEMIATEAAR 336
Query: 193 AERFVRGLRSDIRGFVRAFKPATQAAALRLAVDMSVKEDDAPLKSSSKGASSGWKRKTEQ 252
A++FVRGLR DI+G VRAF+PAT A ALRLAVD+S++E K++ +G++SG KRK EQ
Sbjct: 337 ADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQ 396
Query: 253 PPVEVPQRNLRPSGDFRRFQQGPAEARVVIRDRPLCTS 273
PV VPQRN R G+FRRFQQ P E R +PLCT+
Sbjct: 397 QPVPVPQRNFRSCGEFRRFQQKPFEVGEAARGKPLCTT 434
BLAST of PI0007152 vs. NCBI nr
Match:
KAA0035509.1 (gag protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 323.6 bits (828), Expect = 1.7e-84
Identity = 174/287 (60.63%), Postives = 211/287 (73.52%), Query Frame = 0
Query: 1 MTNPILRHSPGSMS--PRRGARGRGRGRGAGRGQPTEDLVGQGV-PTTPVTYADLAALLV 60
++ P+L H ++ P RG RG GRGRGAGR QP V Q P PVT+ADLAA+
Sbjct: 16 VSKPLLAHVSHILATCPPRGGRG-GRGRGAGRVQPEVQPVAQAPDPAAPVTHADLAAMEQ 75
Query: 61 R----------LEH--RAELWLSSVETVFRYMRCPEDQKVQCAVFLLRDRGVVWWHSAER 120
R LE RA++WLSS+ET+FRYM+CPEDQKVQCAVF+L DRG WW + ER
Sbjct: 76 RKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTER 135
Query: 121 MLGGDVSQITWSQFKESFYDKFFSANLKDVKRQEFLDLKQGSVSVEEYDQEFHMLSRFAP 180
MLGGDVSQITW QFKESFY KFFSA+L+D KRQEFL+L+QG ++VE+YD EF MLSRFAP
Sbjct: 136 MLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAP 195
Query: 181 ELVDTKRARAERFVRGLRSDIRGFVRAFKPATQAAALRLAVDMSVKEDDAPLKSSSKGAS 240
E++ T+ ARA++FVRGLR DI+G VRAF+PAT A ALRLAVD+S++E K++ KG++
Sbjct: 196 EMIATEAARADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGKGST 255
Query: 241 SGWKRKTEQPPVEVPQRNLRPSGDFRRFQQGPAEARVVIRDRPLCTS 273
SG KRK EQ PV VPQRN R G+FR FQQ P EA R PLCT+
Sbjct: 256 SGQKRKAEQQPVPVPQRNFRSGGEFRSFQQKPFEAGEAARGNPLCTT 301
BLAST of PI0007152 vs. NCBI nr
Match:
KAA0040470.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 320.9 bits (821), Expect = 1.1e-83
Identity = 171/282 (60.64%), Postives = 208/282 (73.76%), Query Frame = 0
Query: 4 PILRHSPGSMSPRRGARGRGRGRGAGRGQPTEDLVGQGV-PTTPVTYADLAALLVR---- 63
P++R P RG RG GRGRGAGR QP V Q P PVT+A+LAA+ R
Sbjct: 136 PLVREMPPRRGAWRGGRG-GRGRGAGRVQPEVQPVAQASDPAAPVTHANLAAMEQRKYNP 195
Query: 64 ------LEH--RAELWLSSVETVFRYMRCPEDQKVQCAVFLLRDRGVVWWHSAERMLGGD 123
LE RA+LWLSS+ET+ RYM+CPEDQKVQCAVF+L DRG VWW + ERMLGGD
Sbjct: 196 TTFDGSLEDPTRAQLWLSSLETICRYMKCPEDQKVQCAVFMLTDRGTVWWETTERMLGGD 255
Query: 124 VSQITWSQFKESFYDKFFSANLKDVKRQEFLDLKQGSVSVEEYDQEFHMLSRFAPELVDT 183
VSQITW QFKESFY KFFSA+L+D KRQEFL+L+QG ++VE+YD EF MLSRFAPE++ T
Sbjct: 256 VSQITWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIAT 315
Query: 184 KRARAERFVRGLRSDIRGFVRAFKPATQAAALRLAVDMSVKEDDAPLKSSSKGASSGWKR 243
+ A+A++FVRGLR DI+G VRAF+PAT ALRLAVD+S++E K++ +G++SG KR
Sbjct: 316 EAAKADKFVRGLRLDIQGLVRAFRPATHTDALRLAVDLSLQERANSSKTAGRGSTSGQKR 375
Query: 244 KTEQPPVEVPQRNLRPSGDFRRFQQGPAEARVVIRDRPLCTS 273
K EQ PV VPQRN R G+FRRFQQ P EA R +PLCT+
Sbjct: 376 KAEQQPVPVPQRNFRSGGEFRRFQQKPFEAGEAARGKPLCTT 416
BLAST of PI0007152 vs. NCBI nr
Match:
KAA0056806.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 318.5 bits (815), Expect = 5.4e-83
Identity = 170/281 (60.50%), Postives = 203/281 (72.24%), Query Frame = 0
Query: 5 ILRHSPGSMSPRRGARGRGRGRGAGRGQPTEDLVGQGV-PTTPVTYADLAALLVR----- 64
+ R P RRG RG GRGRGAGR QP V Q P PVT+ADLAA+ R
Sbjct: 59 VAREMPRRRGARRGGRG-GRGRGAGRVQPEVQPVAQATDPAAPVTHADLAAMEQRKYNPT 118
Query: 65 -----LEH--RAELWLSSVETVFRYMRCPEDQKVQCAVFLLRDRGVVWWHSAERMLGGDV 124
LE RA+LWLSS+ET+FRYM+CPEDQKVQCAVF+L DRG WW + ERMLGGDV
Sbjct: 119 TFDGSLEDPTRAQLWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDV 178
Query: 125 SQITWSQFKESFYDKFFSANLKDVKRQEFLDLKQGSVSVEEYDQEFHMLSRFAPELVDTK 184
SQITW QFKESFY KFF A+L+D KRQEFL+L+QG ++VE+YD EF MLSRFAPE++ T+
Sbjct: 179 SQITWQQFKESFYAKFFFASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATE 238
Query: 185 RARAERFVRGLRSDIRGFVRAFKPATQAAALRLAVDMSVKEDDAPLKSSSKGASSGWKRK 244
ARA++FVRGLR DI+ VRAF+PAT ALRLAVD+S++E K++ KG++S KRK
Sbjct: 239 AARADKFVRGLRLDIQSLVRAFRPATHVDALRLAVDLSLQERANSSKTAGKGSTSEQKRK 298
Query: 245 TEQPPVEVPQRNLRPSGDFRRFQQGPAEARVVIRDRPLCTS 273
EQ PV VPQRN R G+FRRFQQ P E R +PLCT+
Sbjct: 299 AEQQPVPVPQRNFRSGGEFRRFQQKPFEVGEAARGKPLCTT 338
BLAST of PI0007152 vs. NCBI nr
Match:
KAA0047498.1 (gag protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 311.6 bits (797), Expect = 6.6e-81
Identity = 173/338 (51.18%), Postives = 209/338 (61.83%), Query Frame = 0
Query: 4 PILRHSPGSMSPRRGARGRGRGRGAGRGQPTEDLVGQGV-PTTPVTYADLAALLVRLEH- 63
P++R P RRG RG GRGRGAGR QP V Q P PVT+ADLAA+ R
Sbjct: 211 PLVREMPPRRGARRGGRG-GRGRGAGRVQPEVQPVAQAPDPVAPVTHADLAAMEQRFRDL 270
Query: 64 ------------------------------------------------------------ 123
Sbjct: 271 IMQMREQQKPASPTPAPAPAPAPAPAPAPVPVAPQFVPDQLSAEAKHLRDFRKYNPTTFD 330
Query: 124 -------RAELWLSSVETVFRYMRCPEDQKVQCAVFLLRDRGVVWWHSAERMLGGDVSQI 183
RA++WLSS+ET+FRYM+CPEDQKVQCAVF+L DRG WW + ERMLGGDVSQI
Sbjct: 331 GSLEDPTRAQMWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQI 390
Query: 184 TWSQFKESFYDKFFSANLKDVKRQEFLDLKQGSVSVEEYDQEFHMLSRFAPELVDTKRAR 243
TW QFKESFY KFFSA+L+D KRQEFL+L+QG ++VE+YD EF MLSRFAPE++ T+ AR
Sbjct: 391 TWQQFKESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIATEAAR 450
Query: 244 AERFVRGLRSDIRGFVRAFKPATQAAALRLAVDMSVKEDDAPLKSSSKGASSGWKRKTEQ 273
A++FVRGLR DI+G VRAF+PAT A ALRLAVD+S++E K++ +G++SG KRK EQ
Sbjct: 451 ADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQ 510
BLAST of PI0007152 vs. NCBI nr
Match:
KAA0040188.1 (pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 310.8 bits (795), Expect = 1.1e-80
Identity = 163/278 (58.63%), Postives = 197/278 (70.86%), Query Frame = 0
Query: 13 MSPRRGARGRGRGRGAGRGQPTEDLVGQGV-PTTPVTYADLAALLVRLEH---------- 72
M PRRGAR GRGRGAGR QP V + P PV L+A L
Sbjct: 157 MPPRRGARRGGRGRGAGRVQPEVQPVAKATDPAAPVVPDQLSAEAKHLRDFRKYNPTTFD 216
Query: 73 -------RAELWLSSVETVFRYMRCPEDQKVQCAVFLLRDRGVVWWHSAERMLGGDVSQI 132
RA+LWLSS+ET+FRYM+CPEDQKVQCAVF+L DRG WW + ERMLGGDVSQI
Sbjct: 217 GSLEDPTRAQLWLSSLETIFRYMKCPEDQKVQCAVFMLTDRGTAWWETTERMLGGDVSQI 276
Query: 133 TWSQFKESFYDKFFSANLKDVKRQEFLDLKQGSVSVEEYDQEFHMLSRFAPELVDTKRAR 192
W QFKESFY KFFSA+L+D +RQEFL+L+QG ++VE+YD EF MLS FAPE++ T+ AR
Sbjct: 277 MWQQFKESFYSKFFSASLRDAERQEFLNLEQGDMTVEQYDAEFDMLSHFAPEMIATEAAR 336
Query: 193 AERFVRGLRSDIRGFVRAFKPATQAAALRLAVDMSVKEDDAPLKSSSKGASSGWKRKTEQ 252
A++FVRGLR DI+G VRAF+PAT A ALRLAVD+S++E K++ +G++SG KRK EQ
Sbjct: 337 ADKFVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQ 396
Query: 253 PPVEVPQRNLRPSGDFRRFQQGPAEARVVIRDRPLCTS 273
PV VPQRN R G+FRRFQQ P E R +PLCT+
Sbjct: 397 QPVPVPQRNFRSCGEFRRFQQKPFEVGEAARGKPLCTT 434
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T2B0 | 8.2e-85 | 60.63 | Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... | [more] |
A0A5A7TAY4 | 5.3e-84 | 60.64 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold26... | [more] |
A0A5A7UR62 | 2.6e-83 | 60.50 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold48... | [more] |
A0A5A7TX64 | 3.2e-81 | 51.18 | Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... | [more] |
A0A5A7TB42 | 5.5e-81 | 58.63 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11... | [more] |
Match Name | E-value | Identity | Description | |