PI0007049 (gene) Melon (PI 482460) v1

Overview


Name	PI0007049
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr01: 14328462 .. 14329585 (+)
RNA-Seq Expression	PI0007049
Synteny	PI0007049

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAATGCTGACATACCGAACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGTGGGGAGGACATTCACTACATAGAGACGTTCAACGCATGGAGTCAATGGAGGGCCGAGCTTGCGGAAAGAATGTTTTGTGATTGGGAGTTGCGTAATCAGTAATGACCAATTAATTCTACTACTACCCGTGTGTTACGTACTATGTATTGTGTATTGTGTGTCCTGTGTATTGTGTTTTGCGTATAATGTATGTGTTAACATTTTGATTGTTGACGTAAATCGCACCTCACTTAGTTTGTGATATTAATTTATTGTTATTTTTTTCCTAGTATGGCAACGTCTTCAAGGGCCCCCAAGCACCACTGGACGAAAAAGGAGGATTCCGTCCTCGTTGAATGTCTGGTGGAGTTGGTATTTTCCGGCGGGTGGAAGTCGGATAACGGGACTTTTAGACCCGGATACCATAGTCATCTAAAGAGAATGATTGCTGCGAGGATGCCTGGACATAACATAACGGCTACGACAATAGATTGTCAGATCAAGACATTGAAAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGGTATGTTCTTTATTCTGTCAATTACTGTTCCTTTCTAATTATAAATTGTCTAATTTGTTACCATAACAACACTTGTACAGAGTCATCCAGCCGCAAAGGGCCTCCTGAACAAACCCTTTCCCCACTACGACGACCTCTGCTACGTGTTTGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGGTGATGTTGGGTCGAACGTGCCTCTAGGCTTCGAAGGATTTGTCCAATACGACGGGAACGATGTGGAGAACCCGACGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATGTCTAAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGCAGTGTCATGGAATATGCCAATGACCAACTTAAGGCCATTGCAGAATGA

mRNA sequence

ATGACGAATGCTGACATACCGAACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGTGGGGAGGACATTCACTACATAGAGACGTTCAACGCATGGAGTCAATGGAGGGCCGAGCTTGCGGAAAGAATGTTTTGTGATTGGGAGTTGCGTAATCATATGGCAACGTCTTCAAGGGCCCCCAAGCACCACTGGACGAAAAAGGAGGATTCCGTCCTCGTTGAATGTCTGGTGGAGTTGGTATTTTCCGGCGGGTGGAAGTCGGATAACGGGACTTTTAGACCCGGATACCATAGTCATCTAAAGAGAATGATTGCTGCGAGGATGCCTGGACATAACATAACGGCTACGACAATAGATTGTCAGATCAAGACATTGAAAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCTGAACAAACCCTTTCCCCACTACGACGACCTCTGCTACGTGTTTGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGGTGATGTTGGGTCGAACGTGCCTCTAGGCTTCGAAGGATTTGTCCAATACGACGGGAACGATGTGGAGAACCCGACGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATGTCTAAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGCAGTGTCATGGAATATGCCAATGACCAACTTAAGGCCATTGCAGAATGA

Coding sequence (CDS)

ATGACGAATGCTGACATACCGAACGAAGTTGATGAGGGTGACTCAACGTACGCCACCACTGGTGGGGAGGACATTCACTACATAGAGACGTTCAACGCATGGAGTCAATGGAGGGCCGAGCTTGCGGAAAGAATGTTTTGTGATTGGGAGTTGCGTAATCATATGGCAACGTCTTCAAGGGCCCCCAAGCACCACTGGACGAAAAAGGAGGATTCCGTCCTCGTTGAATGTCTGGTGGAGTTGGTATTTTCCGGCGGGTGGAAGTCGGATAACGGGACTTTTAGACCCGGATACCATAGTCATCTAAAGAGAATGATTGCTGCGAGGATGCCTGGACATAACATAACGGCTACGACAATAGATTGTCAGATCAAGACATTGAAAAGAGCATTCCAAGCGATATCTGAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGGCCTCCTGAACAAACCCTTTCCCCACTACGACGACCTCTGCTACGTGTTTGGAAGAGATCGTGCAACAGGAGGTCGAGCTGAAACCTTCGGTGATGTTGGGTCGAACGTGCCTCTAGGCTTCGAAGGATTTGTCCAATACGACGGGAACGATGTGGAGAACCCGACGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCGGTTCGTATGTCTAAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAGGGCAGGCATTGGAGGCGGCTGAAATTATTCGCAGTGTCATGGAATATGCCAATGACCAACTTAAGGCCATTGCAGAATGA

Protein sequence

MTNADIPNEVDEGDSTYATTGGEDIHYIETFNAWSQWRAELAERMFCDWELRNHMATSSRAPKHHWTKKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATTIDCQIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATGGRAETFGDVGSNVPLGFEGFVQYDGNDVENPTMCSQGLDMSPDDIMTPRSVRMSKARPGSSGSKRKHGGQALEAAEIIRSVMEYANDQLKAIAE

Homology

[Close]

BLAST of PI0007049 vs. ExPASy TrEMBL
Match: A0A5A7T091 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9475G00160 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.9e-96
Identity = 183/293 (62.46%), Postives = 217/293 (74.06%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSTYA-TTGGEDIHYIETFNAWSQWRAELAERMFCDWELRNHMATSS 60
           MT  D   + DEGDSTYA TT  EDI YIET N WSQWR  LA  MF DW    HM+TS+
Sbjct: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDW----HMSTSN 60

Query: 61  RAPKHHWTKKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATT 120
           RAP+H WT++E+  LVECL+ELV  GGWKSDNGTFRPGY + L RM+A ++PG  + ATT
Sbjct: 61  RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 120

Query: 121 -IDCQIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKP 180
            IDC+IKTLKR FQAI+EMRGP CSGFGWNDE KCI+AEK+LFD+WV+SHPAAKGLLNKP
Sbjct: 121 VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 180

Query: 181 FPHYDDLCYVFGRDRATGGRAETFGDVGSNVP-LGFEGFVQYDGNDVENPTMCSQGLDMS 240
           FP+YD+L YVF RDRATG  AETF DVGSN P  G++ F   DGN+ + P + SQG+D+S
Sbjct: 181 FPYYDELTYVFCRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSQGVDIS 240

Query: 241 PDDIMTPRSVRMSKARPGSSGSKRKHGGQALEAAEIIRSVMEYANDQLKAIAE 291
            DD+   R  R S+ R GSSGSKRK G Q     E I   ++  N+QL+ IAE
Sbjct: 241 QDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAE 288

[Close]

BLAST of PI0007049 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 2.4e-95
Identity = 174/290 (60.00%), Postives = 216/290 (74.48%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSTYATTGGEDIHYIETFNAWSQWRAELAERMFCDWELRNHMATSSR 60
           MTN DI + +DE DST+ATT  +DIHYIET N WSQWR  LAE +         M +SSR
Sbjct: 311 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEI---------MTSSSR 370

Query: 61  APKHHWTKKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATTI 120
            PKH WTK+E++ LVECLVELV +GGW+SDNGTFRPGY + L RM+A ++PG NI A+TI
Sbjct: 371 LPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTI 430

Query: 121 DCQIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFP 180
           D +IK +KR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGLLNK F 
Sbjct: 431 DSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFV 490

Query: 181 HYDDLCYVFGRDRATGGRAETFGDVGSNVPLGFEGFVQYDGNDVENPTMCSQGLDMSPDD 240
           HYD+L YVFG+DRATGGRAE+F D+GSN P G++        D + P M S GL+MSPDD
Sbjct: 491 HYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDD 550

Query: 241 IMTPRSVRMSKARPGSSGSKRKHGGQALEAAEIIRSVMEYANDQLKAIAE 291
           +M  R+ R+S+ R  SSGSKRK  G A ++ +I+R+ +EY N+QL  IAE
Sbjct: 551 LMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 589

[Close]

BLAST of PI0007049 vs. ExPASy TrEMBL
Match: A0A5A7SXX8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00320 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 9.9e-89
Identity = 163/290 (56.21%), Postives = 207/290 (71.38%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSTYATTGGEDIHYIETFNAWSQWRAELAERMFCDWELRNHMATSSR 60
           M   DI +++DE DST+AT+  +DIHYIET N W++WR +L E MF +WELRN MA+S R
Sbjct: 53  MKTFDIVDDIDEVDSTHATSAADDIHYIETSNEWTRWRDDLDEEMFSEWELRNDMASSLR 112

Query: 61  APKHHWTKKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATTI 120
             KH+WTK+E++ LVECLVELV +GGW+SDNGTFRPG                       
Sbjct: 113 LLKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPG----------------------- 172

Query: 121 DCQIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFP 180
             +IK LKR F AI+EM GPTCS FGWNDE KCI+AEK++FD+WVKSHP AKGLLNK FP
Sbjct: 173 --RIKLLKRMFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFP 232

Query: 181 HYDDLCYVFGRDRATGGRAETFGDVGSNVPLGFEGFVQYDGNDVENPTMCSQGLDMSPDD 240
           HYD+L YVFG+DRATGGRAE+F D+G N P G+E F      D +   M SQGL+MSPD+
Sbjct: 233 HYDELSYVFGKDRATGGRAESFADIGLNDPAGYEPFAVDATPDTDFQPMYSQGLNMSPDE 292

Query: 241 IMTPRSVRMSKARPGSSGSKRKHGGQALEAAEIIRSVMEYANDQLKAIAE 291
           +M  R+ ++S+ R  SSGSKRK  GQA ++ +++R+ +EY N+QL  IAE
Sbjct: 293 LMGIRNAQVSEGRYVSSGSKRKRKGQATDSGDVLRTAIEYGNEQLNCIAE 317

[Close]

BLAST of PI0007049 vs. ExPASy TrEMBL
Match: A0A5D3BRF0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G001260 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 1.3e-85
Identity = 160/290 (55.17%), Postives = 207/290 (71.38%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSTYATTGGEDIHYIETFNAWSQWRAELAERMFCDWELRNHMATSSR 60
           MT  DI +++DE DST+AT+  +DIHYIE  N W+ WR +LAE +         +A+SSR
Sbjct: 159 MTTCDIVDDIDEVDSTHATSAVDDIHYIEMSNEWTWWRDDLAEEI---------IASSSR 218

Query: 61  APKHHWTKKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATTI 120
            PKH+WTK+E++ LVECL+ELV +GGW+ DN TFRP Y + L RM+  ++PG NI A TI
Sbjct: 219 LPKHNWTKEEEAGLVECLLELVNAGGWRFDNETFRPRYLNQLVRMMTFKIPGSNIHALTI 278

Query: 121 DCQIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFP 180
           D +IK LKR F AI+EM G TCSGF WNDE KCI+AEK++FD WVK+HP AKGLLNK F 
Sbjct: 279 DSRIKLLKRMFHAIAEMPGSTCSGFRWNDEQKCIVAEKEVFDDWVKNHPTAKGLLNKSFS 338

Query: 181 HYDDLCYVFGRDRATGGRAETFGDVGSNVPLGFEGFVQYDGNDVENPTMCSQGLDMSPDD 240
           HY+ L YVFG+DRA  G  E+F DV SN  +G+E F      D     M SQGL+MSPD+
Sbjct: 339 HYNKLSYVFGKDRAMRGWVESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDE 398

Query: 241 IMTPRSVRMSKARPGSSGSKRKHGGQALEAAEIIRSVMEYANDQLKAIAE 291
           +M  R+ R+S+ R  SSGSKRK GGQA ++ +++R+ +EY N+QL  IAE
Sbjct: 399 LMGTRTARVSEGRYVSSGSKRKRGGQATDSGDVLRTTIEYGNEQLNRIAE 439

[Close]

BLAST of PI0007049 vs. ExPASy TrEMBL
Match: A0A5A7THQ9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00640 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.6e-83
Identity = 160/283 (56.54%), Postives = 194/283 (68.55%), Query Frame = 0


Query: 8   NEVDEGDSTYATTGGEDIHYIETFNAWSQWRAELAERMFCDWELRNHMATSSRAPKHHWT 67
           + +DE DST+ATT  +DIHYIETFN WSQWR +LAE MF DWELR               
Sbjct: 120 DNIDEVDSTHATTTADDIHYIETFNEWSQWRDDLAEEMFTDWELRRGRPRG--------- 179

Query: 68  KKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATTIDCQIKTL 127
                    CLVELV +GGW+SDNGTFRPGY + L RM A ++PG NI A+TID +IK +
Sbjct: 180 ---------CLVELVNAGGWRSDNGTFRPGYLNQLARMTAFKIPGCNIHASTIDSRIKLM 239

Query: 128 KRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCY 187
           KR F A+++M GP CSGFG NDE KCI+AEK++FD WVKSHPA KGLLNK F HYD L Y
Sbjct: 240 KRMFHALTKMPGPMCSGFGLNDEKKCIVAEKEVFDDWVKSHPAMKGLLNKSFLHYDKLSY 299

Query: 188 VFGRDRATGGRAETFGDVGSNVPLGFEGFVQYDGNDVENPTMCSQGLDMSPDDIMTPRSV 247
           VFG+DRATGGRAE+F DVGSN   G++ F      D + P M SQGL+M  DD+M  R+ 
Sbjct: 300 VFGKDRATGGRAESFADVGSNDSTGYDAFATDAVPDTDFPPMYSQGLNMLSDDLMGIRTA 359

Query: 248 RMSKARPGSSGSKRKHGGQALEAAEIIRSVMEYANDQLKAIAE 291
           R+S+ R  SS SKRK  G A  + +I+R+ +EY N QL  IAE
Sbjct: 360 RVSERRNVSSRSKRKRAGHATYSGDIVRTAIEYENKQLNRIAE 384

[Close]

BLAST of PI0007049 vs. NCBI nr
Match: KAA0036924.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 361.7 bits (927), Expect = 6.0e-96
Identity = 183/293 (62.46%), Postives = 217/293 (74.06%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSTYA-TTGGEDIHYIETFNAWSQWRAELAERMFCDWELRNHMATSS 60
           MT  D   + DEGDSTYA TT  EDI YIET N WSQWR  LA  MF DW    HM+TS+
Sbjct: 1   MTYCDDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDNLAASMFTDW----HMSTSN 60

Query: 61  RAPKHHWTKKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATT 120
           RAP+H WT++E+  LVECL+ELV  GGWKSDNGTFRPGY + L RM+A ++PG  + ATT
Sbjct: 61  RAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATT 120

Query: 121 -IDCQIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKP 180
            IDC+IKTLKR FQAI+EMRGP CSGFGWNDE KCI+AEK+LFD+WV+SHPAAKGLLNKP
Sbjct: 121 VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKP 180

Query: 181 FPHYDDLCYVFGRDRATGGRAETFGDVGSNVP-LGFEGFVQYDGNDVENPTMCSQGLDMS 240
           FP+YD+L YVF RDRATG  AETF DVGSN P  G++ F   DGN+ + P + SQG+D+S
Sbjct: 181 FPYYDELTYVFCRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSQGVDIS 240

Query: 241 PDDIMTPRSVRMSKARPGSSGSKRKHGGQALEAAEIIRSVMEYANDQLKAIAE 291
            DD+   R  R S+ R GSSGSKRK G Q     E I   ++  N+QL+ IAE
Sbjct: 241 QDDVCASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAE 288

[Close]

BLAST of PI0007049 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 358.6 bits (919), Expect = 5.0e-95
Identity = 174/290 (60.00%), Postives = 216/290 (74.48%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSTYATTGGEDIHYIETFNAWSQWRAELAERMFCDWELRNHMATSSR 60
           MTN DI + +DE DST+ATT  +DIHYIET N WSQWR  LAE +         M +SSR
Sbjct: 311 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDNLAEEI---------MTSSSR 370

Query: 61  APKHHWTKKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATTI 120
            PKH WTK+E++ LVECLVELV +GGW+SDNGTFRPGY + L RM+A ++PG NI A+TI
Sbjct: 371 LPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTI 430

Query: 121 DCQIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFP 180
           D +IK +KR F A++EMRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGLLNK F 
Sbjct: 431 DSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFV 490

Query: 181 HYDDLCYVFGRDRATGGRAETFGDVGSNVPLGFEGFVQYDGNDVENPTMCSQGLDMSPDD 240
           HYD+L YVFG+DRATGGRAE+F D+GSN P G++        D + P M S GL+MSPDD
Sbjct: 491 HYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDD 550

Query: 241 IMTPRSVRMSKARPGSSGSKRKHGGQALEAAEIIRSVMEYANDQLKAIAE 291
           +M  R+ R+S+ R  SSGSKRK  G A ++ +I+R+ +EY N+QL  IAE
Sbjct: 551 LMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 589

[Close]

BLAST of PI0007049 vs. NCBI nr
Match: KAA0035413.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.7 bits (862), Expect = 2.1e-88
Identity = 163/290 (56.21%), Postives = 207/290 (71.38%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSTYATTGGEDIHYIETFNAWSQWRAELAERMFCDWELRNHMATSSR 60
           M   DI +++DE DST+AT+  +DIHYIET N W++WR +L E MF +WELRN MA+S R
Sbjct: 53  MKTFDIVDDIDEVDSTHATSAADDIHYIETSNEWTRWRDDLDEEMFSEWELRNDMASSLR 112

Query: 61  APKHHWTKKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATTI 120
             KH+WTK+E++ LVECLVELV +GGW+SDNGTFRPG                       
Sbjct: 113 LLKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPG----------------------- 172

Query: 121 DCQIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFP 180
             +IK LKR F AI+EM GPTCS FGWNDE KCI+AEK++FD+WVKSHP AKGLLNK FP
Sbjct: 173 --RIKLLKRMFHAIAEMCGPTCSRFGWNDEQKCIVAEKEVFDNWVKSHPTAKGLLNKSFP 232

Query: 181 HYDDLCYVFGRDRATGGRAETFGDVGSNVPLGFEGFVQYDGNDVENPTMCSQGLDMSPDD 240
           HYD+L YVFG+DRATGGRAE+F D+G N P G+E F      D +   M SQGL+MSPD+
Sbjct: 233 HYDELSYVFGKDRATGGRAESFADIGLNDPAGYEPFAVDATPDTDFQPMYSQGLNMSPDE 292

Query: 241 IMTPRSVRMSKARPGSSGSKRKHGGQALEAAEIIRSVMEYANDQLKAIAE 291
           +M  R+ ++S+ R  SSGSKRK  GQA ++ +++R+ +EY N+QL  IAE
Sbjct: 293 LMGIRNAQVSEGRYVSSGSKRKRKGQATDSGDVLRTAIEYGNEQLNCIAE 317

[Close]

BLAST of PI0007049 vs. NCBI nr
Match: KAA0060558.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 326.2 bits (835), Expect = 2.8e-85
Identity = 160/290 (55.17%), Postives = 207/290 (71.38%), Query Frame = 0


Query: 1   MTNADIPNEVDEGDSTYATTGGEDIHYIETFNAWSQWRAELAERMFCDWELRNHMATSSR 60
           MT  DI +++DE DST+AT+  +DIHYIE  N W+ WR +LAE +         +A+SSR
Sbjct: 159 MTTCDIVDDIDEVDSTHATSAVDDIHYIEMSNEWTWWRDDLAEEI---------IASSSR 218

Query: 61  APKHHWTKKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATTI 120
            PKH+WTK+E++ LVECL+ELV +GGW+ DN TFRP Y + L RM+  ++PG NI A TI
Sbjct: 219 LPKHNWTKEEEAGLVECLLELVNAGGWRFDNETFRPRYLNQLVRMMTFKIPGSNIHALTI 278

Query: 121 DCQIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFP 180
           D +IK LKR F AI+EM G TCSGF WNDE KCI+AEK++FD WVK+HP AKGLLNK F 
Sbjct: 279 DSRIKLLKRMFHAIAEMPGSTCSGFRWNDEQKCIVAEKEVFDDWVKNHPTAKGLLNKSFS 338

Query: 181 HYDDLCYVFGRDRATGGRAETFGDVGSNVPLGFEGFVQYDGNDVENPTMCSQGLDMSPDD 240
           HY+ L YVFG+DRA  G  E+F DV SN  +G+E F      D     M SQGL+MSPD+
Sbjct: 339 HYNKLSYVFGKDRAMRGWVESFMDVTSNDLIGYEAFAIDAAPDTNFQLMYSQGLNMSPDE 398

Query: 241 IMTPRSVRMSKARPGSSGSKRKHGGQALEAAEIIRSVMEYANDQLKAIAE 291
           +M  R+ R+S+ R  SSGSKRK GGQA ++ +++R+ +EY N+QL  IAE
Sbjct: 399 LMGTRTARVSEGRYVSSGSKRKRGGQATDSGDVLRTTIEYGNEQLNRIAE 439

[Close]

BLAST of PI0007049 vs. NCBI nr
Match: KAA0041596.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 319.3 bits (817), Expect = 3.4e-83
Identity = 160/283 (56.54%), Postives = 194/283 (68.55%), Query Frame = 0


Query: 8   NEVDEGDSTYATTGGEDIHYIETFNAWSQWRAELAERMFCDWELRNHMATSSRAPKHHWT 67
           + +DE DST+ATT  +DIHYIETFN WSQWR +LAE MF DWELR               
Sbjct: 120 DNIDEVDSTHATTTADDIHYIETFNEWSQWRDDLAEEMFTDWELRRGRPRG--------- 179

Query: 68  KKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATTIDCQIKTL 127
                    CLVELV +GGW+SDNGTFRPGY + L RM A ++PG NI A+TID +IK +
Sbjct: 180 ---------CLVELVNAGGWRSDNGTFRPGYLNQLARMTAFKIPGCNIHASTIDSRIKLM 239

Query: 128 KRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCY 187
           KR F A+++M GP CSGFG NDE KCI+AEK++FD WVKSHPA KGLLNK F HYD L Y
Sbjct: 240 KRMFHALTKMPGPMCSGFGLNDEKKCIVAEKEVFDDWVKSHPAMKGLLNKSFLHYDKLSY 299

Query: 188 VFGRDRATGGRAETFGDVGSNVPLGFEGFVQYDGNDVENPTMCSQGLDMSPDDIMTPRSV 247
           VFG+DRATGGRAE+F DVGSN   G++ F      D + P M SQGL+M  DD+M  R+ 
Sbjct: 300 VFGKDRATGGRAESFADVGSNDSTGYDAFATDAVPDTDFPPMYSQGLNMLSDDLMGIRTA 359

Query: 248 RMSKARPGSSGSKRKHGGQALEAAEIIRSVMEYANDQLKAIAE 291
           R+S+ R  SS SKRK  G A  + +I+R+ +EY N QL  IAE
Sbjct: 360 RVSERRNVSSRSKRKRAGHATYSGDIVRTAIEYENKQLNRIAE 384

[Close]

BLAST of PI0007049 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-11
Identity = 40/146 (27.40%), Postives = 69/146 (47.26%), Query Frame = 0


Query: 60  RAPKHHWTKKEDSVLVECLVELVFSGGWKSDNGTF-RPGYHSHLKRMIAARMPGHNITAT 119
           + P + WT  E  VL+E + +      W+  +G   +    S L   +  R+ G N    
Sbjct: 11  KGPYNQWTPDETDVLIELIRQ-----NWRDSSGIIGKLTVESKLLPALNKRL-GCNKNHK 70

Query: 120 TIDCQIKTLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKP 179
               ++K LK  +Q+  +++    SGFGW+ E K   A  +++  ++K+HP  K +  + 
Sbjct: 71  NYMSRLKFLKNLYQSYLDLK-RFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTES 130

Query: 180 FPHYDDLCYVFGRDRATGGRAETFGD 205
             H++DL  +FG   ATG  A    D
Sbjct: 131 IDHFEDLQIIFGDVVATGSFAVGMSD 149

[Close]

BLAST of PI0007049 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-10
Identity = 34/131 (25.95%), Postives = 64/131 (48.85%), Query Frame = 0


Query: 66  WTKKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATTIDCQIK 125
           WT   D  L++ LVE V +G       TF     + +     A+  G       +  + K
Sbjct: 327 WTPPMDYHLIDLLVEQVNNGNRVGQ--TFITSAWNEMVTAFNAKF-GSQHNKDVLKNRYK 386

Query: 126 TLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDL 185
            L+R +  I  +     +GF W+     +IA+ D++++++++HP A+    K  P Y +L
Sbjct: 387 HLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNL 446

Query: 186 CYVFGRDRATG 197
           C++FG++ + G
Sbjct: 447 CFIFGKETSDG 452

[Close]

BLAST of PI0007049 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 9.1e-10
Identity = 29/125 (23.20%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 66  WTKKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATTIDCQIK 125
           W    D   ++ +++    G      G FR    + +  +  A+    N     +  + K
Sbjct: 186 WHPPMDRYFIDLMLDQARRG--NQIEGVFRKQAWTEMVNLFNAKFES-NFDVDVLKNRYK 245

Query: 126 TLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDL 185
           +L+R F AI  +      GF W++E + + A+ +++  ++K+H  A+  + +P P+Y DL
Sbjct: 246 SLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDL 305

Query: 186 CYVFG 191
           C + G
Sbjct: 306 CVLCG 305

[Close]

BLAST of PI0007049 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 62.0 bits (149), Expect = 9.1e-10
Identity = 29/125 (23.20%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 66  WTKKEDSVLVECLVELVFSGGWKSDNGTFRPGYHSHLKRMIAARMPGHNITATTIDCQIK 125
           W    D   ++ +++    G      G FR    + +  +  A+    N     +  + K
Sbjct: 186 WHPPMDRYFIDLMLDQARRG--NQIEGVFRKQAWTEMVNLFNAKFES-NFDVDVLKNRYK 245

Query: 126 TLKRAFQAISEMRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDL 185
           +L+R F AI  +      GF W++E + + A+ +++  ++K+H  A+  + +P P+Y DL
Sbjct: 246 SLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDL 305

Query: 186 CYVFG 191
           C + G
Sbjct: 306 CVLCG 305

[Close]

BLAST of PI0007049 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 8.8e-05
Identity = 17/53 (32.08%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 144 GFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKPFPHYDDLCYVFGRDRATG 197
           GF W+   + +I +  L+  ++K+HP A+    KP  ++ DLC ++G   A G
Sbjct: 88  GFVWDQTHQTVIGDDSLWSLYLKAHPEARVYKTKPVLNFSDLCLIYGYTVADG 140

The following BLAST results are available for this feature:

BLAST of PI0007049 vs.


Match Name	E-value	Identity	Description

BLAST of PI0007049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T091	2.9e-96	62.46	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
E5GCB5	2.4e-95	60.00	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5A7SXX8	9.9e-89	56.21	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BRF0	1.3e-85	55.17	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7THQ9	1.6e-83	56.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0007049 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036924.1	6.0e-96	62.46	retrotransposon protein [Cucumis melo var. makuwa]	[more]
ADN34114.1	5.0e-95	60.00	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0035413.1	2.1e-88	56.21	retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon p...	[more]
KAA0060558.1	2.8e-85	55.17	retrotransposon protein [Cucumis melo var. makuwa] >TYK02311.1 retrotransposon p...	[more]
KAA0041596.1	3.4e-83	56.54	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0007049 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30140.1	4.8e-11	27.40	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	2.4e-10	25.95	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	9.1e-10	23.20	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	9.1e-10	23.20	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.1	8.8e-05	32.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 65..160 e-value: 5.6E-7 score: 30.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..266
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 56..279
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 56..279

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0007049.1	PI0007049.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane