Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCATTATAGGCCTATTTCGTGTTGTAATGTGGTTTACAAGTGCATTTCTAAGATTTTGGCGGATAGGCTTCGTGTGTGGCTTCCTTCTTTGATCAGTGGTAATCAGTCAGCCTTTGTTGTTGGGAGGAGTATTGTTGATAACATTCTGCTTTGTCAGGAGATGGTGGGGGATTATCATGGTTCTTCGGGTCCGCCTAGGTGTGCGATGAAGGTGGATCTTCAAAAGGCTTATGATTCGGTGAATTGGGATTTTCTGTTCAGCTTGTTGCTTACTATTGGCACTCCCTTGCGTTTTGTGAGTTGGATTAGGGCGTGTGTTACTTCTCCTATGTTCTCTATCATGGTTAATGGTTCTGTCGAGGGATTTTTTCCTGGTAGAAAAGGGTTGCGGCAGGGTGAACCTTTATCCCCCTTTTTGTTTGTGATGGTGATGGAGGTGCTAACTCGTCTTTTGAGAAGGCCCTCTCTGGATTTCAAGTATCATCATCGTTGTGAGAAGGTTTGTTTGACGCATCTAACCTTCGCTGATGATCTTATGATTTTTTGTTATGCTGACACCGCTTCCATTGGCTTTGTGTGCGAGACTCTTCGTTAGTTTGGGGAGTTATCGGGGTTAATTGCTAATCTGGAAAAGAGCTCTATGTTTATGGCGGGGGTTGACATTGAGGTTGCTACTGTGTTGGCTGATAGTATGGGGTTTGCGCTGGGTACTTTGCCTGTTCGTTACCTGGGTGTTCCCTTACTCTCTGGTCGTCTGCGATCTTCGAATTGTGCTCCGCTCATCCAGCGTATTACTAGTCGAATTCGGTCTTGGTCGGCTAGAGTATTATCCTTCGCTGGTAGACTTCAGCTTGTGCGTTCGGTGTTGCGGAGTTTTCAGGTCTTTTAG
mRNA sequence
ATGGAGCATTATAGGCCTATTTCGTGTTGTAATGTGGTTTACAAGTGCATTTCTAAGATTTTGGCGGATAGGCTTCGTGTGTGGCTTCCTTCTTTGATCAGTGGTAATCAGTCAGCCTTTGTTGTTGGGAGGAGTATTGTTGATAACATTCTGCTTTGTCAGGAGATGGTGGGGGATTATCATGGTTCTTCGGGTCCGCCTAGGTGTGCGATGAAGTTATCGGGGTTAATTGCTAATCTGGAAAAGAGCTCTATGTTTATGGCGGGGGTTGACATTGAGGTTGCTACTGTGTTGGCTGATAGTATGGGGTTTGCGCTGGGTACTTTGCCTGTTCGTTACCTGGGTGTTCCCTTACTCTCTGGTCGTCTGCGATCTTCGAATTGTGCTCCGCTCATCCAGCGTATTACTAGTCGAATTCGGTCTTGGTCGGCTAGAGTATTATCCTTCGCTGGTAGACTTCAGCTTGTGCGTTCGGTGTTGCGGAGTTTTCAGGTCTTTTAG
Coding sequence (CDS)
ATGGAGCATTATAGGCCTATTTCGTGTTGTAATGTGGTTTACAAGTGCATTTCTAAGATTTTGGCGGATAGGCTTCGTGTGTGGCTTCCTTCTTTGATCAGTGGTAATCAGTCAGCCTTTGTTGTTGGGAGGAGTATTGTTGATAACATTCTGCTTTGTCAGGAGATGGTGGGGGATTATCATGGTTCTTCGGGTCCGCCTAGGTGTGCGATGAAGTTATCGGGGTTAATTGCTAATCTGGAAAAGAGCTCTATGTTTATGGCGGGGGTTGACATTGAGGTTGCTACTGTGTTGGCTGATAGTATGGGGTTTGCGCTGGGTACTTTGCCTGTTCGTTACCTGGGTGTTCCCTTACTCTCTGGTCGTCTGCGATCTTCGAATTGTGCTCCGCTCATCCAGCGTATTACTAGTCGAATTCGGTCTTGGTCGGCTAGAGTATTATCCTTCGCTGGTAGACTTCAGCTTGTGCGTTCGGTGTTGCGGAGTTTTCAGGTCTTTTAG
Protein sequence
MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDYHGSSGPPRCAMKLSGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF
Homology
BLAST of PI0007006 vs. ExPASy TrEMBL
Match:
A0A5A7V4C1 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00110 PE=4 SV=1)
HSP 1 Score: 231.1 bits (588), Expect = 3.4e-57
Identity = 123/195 (63.08%), Postives = 141/195 (72.31%), Query Frame = 0
Query: 1 MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDY 60
ME +RPISCCNV+YKCISKILADR+ VWLPS IS NQSAF+ GRSI+DNILLCQE+VG Y
Sbjct: 197 MEEFRPISCCNVIYKCISKILADRICVWLPSFISSNQSAFMPGRSIIDNILLCQELVGGY 256
Query: 61 HGSSGPPRCAMKL-----------------------------SGLIANLEKSSMFMAGVD 120
H + G PR +K+ SGL ANL KSS+F+AGV
Sbjct: 257 HLNFGKPRYTLKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVTSGLFANLRKSSIFVAGVS 316
Query: 121 IEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAG 167
E A+ LA SMGF LG LPVRYLG+PLL+GRLRS++CAPLIQRITS IRSW+ARVLSF G
Sbjct: 317 HEAASHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFG 376
BLAST of PI0007006 vs. ExPASy TrEMBL
Match:
A0A1S4E258 (uncharacterized protein LOC103496880 OS=Cucumis melo OX=3656 GN=LOC103496880 PE=4 SV=1)
HSP 1 Score: 222.2 bits (565), Expect = 1.6e-54
Identity = 120/191 (62.83%), Postives = 138/191 (72.25%), Query Frame = 0
Query: 1 MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDY 60
ME +RPISCCNV+YKCISKILADR+ VWLPS IS NQSAF+ GRSI+DNILLCQE+VG Y
Sbjct: 197 MEEFRPISCCNVIYKCISKILADRICVWLPSFISSNQSAFMPGRSIIDNILLCQELVGGY 256
Query: 61 HGSSGPPRCAMK--------------LSGLI-----------ANLEKSSMFMAGVDIEVA 120
H + G PR +K L GL+ KSS+F+AGV E A
Sbjct: 257 HLNFGKPRYTLKVDLQKAYDSVNWDFLFGLLIAIGTPLKFERCKARKSSIFVAGVSHEAA 316
Query: 121 TVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQL 167
+ LA SMGF LG LPVRYLG+PLL+GRLRS++CAPLIQRITS IRSW+ARVLSF G LQL
Sbjct: 317 SHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQL 376
BLAST of PI0007006 vs. ExPASy TrEMBL
Match:
A0A1S3BSI8 (uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=4 SV=1)
HSP 1 Score: 214.5 bits (545), Expect = 3.3e-52
Identity = 124/237 (52.32%), Postives = 143/237 (60.34%), Query Frame = 0
Query: 1 MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDY 60
+E +RPISCCNV+YKCISKILADRLRVWLPS IS NQSAF++GRSI++NILLCQE+VG Y
Sbjct: 399 LEDFRPISCCNVLYKCISKILADRLRVWLPSFISSNQSAFILGRSIIENILLCQELVGGY 458
Query: 61 HGSSGPPRCAMK------------------------------------------------ 120
H +SG PRC +K
Sbjct: 459 HLNSGKPRCTLKVDLQKAYDSVNWDFLFGLQISISTPLKKGVRQGDPLSLFLFVMVMEVL 518
Query: 121 -----------------------LSGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTL 167
LSGL AN KSS+F+AGV+ E A+ LA MGF G L
Sbjct: 519 SRMLNKIPQSFQFHHRCEKRFGELSGLFANPRKSSIFIAGVNNENASRLAACMGFVRGNL 578
BLAST of PI0007006 vs. ExPASy TrEMBL
Match:
A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)
HSP 1 Score: 209.5 bits (532), Expect = 1.0e-50
Identity = 119/226 (52.65%), Postives = 138/226 (61.06%), Query Frame = 0
Query: 1 MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDY 60
ME +RPISCCNV+YKCISKILADRLRVWLPS I NQSAF+ GRSI+DNILLCQE+V Y
Sbjct: 753 MEEFRPISCCNVIYKCISKILADRLRVWLPSFIGSNQSAFIPGRSIIDNILLCQELVEGY 812
Query: 61 HGSSGPPRCAMK-----------------------------------LSGLIANLEKSSM 120
H +SG PRC +K LS ++ + +S
Sbjct: 813 HLNSGKPRCTLKVDLQKAYDSVNWDFLKGVRQGDPLSPFLFVMVMEVLSRMLNKIPQSFK 872
Query: 121 F-------------------------MAGVDIEVATVLADSMGFALGTLPVRYLGVPLLS 167
F + E A+ LA SMGF LG LPVRYLG+PLL+
Sbjct: 873 FHHRCEKVKLTHLTFADDLMIFCAADEPSLSNEAASHLAASMGFVLGNLPVRYLGLPLLT 932
BLAST of PI0007006 vs. ExPASy TrEMBL
Match:
A0A5A7UP65 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00070 PE=4 SV=1)
HSP 1 Score: 203.4 bits (516), Expect = 7.5e-49
Identity = 124/266 (46.62%), Postives = 143/266 (53.76%), Query Frame = 0
Query: 1 MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDY 60
+E +RPISCCNV+YKCISKILADRLRVWLPS IS NQSAF++GRSI++NILLCQE+VG Y
Sbjct: 436 LEDFRPISCCNVLYKCISKILADRLRVWLPSFISSNQSAFILGRSIIENILLCQELVGGY 495
Query: 61 HGSSGPPRCAMK------------------------------------------------ 120
H +SG PRC +K
Sbjct: 496 HLNSGKPRCTLKVDLQKAYDSVNWDFLFGLQISISTPLKFVSWISACVTSPMFSIMINGS 555
Query: 121 ----------------------------------------------------LSGLIANL 167
LSGL AN
Sbjct: 556 LEGFFHGRKGVRQGDPLSLFLFVMVMEVLSRMLNKIPQSFQFHHRCEKRFGELSGLFANP 615
BLAST of PI0007006 vs. NCBI nr
Match:
KAA0060725.1 (uncharacterized protein E6C27_scaffold72G00120 [Cucumis melo var. makuwa] >TYK01467.1 uncharacterized protein E5676_scaffold451G00110 [Cucumis melo var. makuwa])
HSP 1 Score: 231.1 bits (588), Expect = 7.0e-57
Identity = 123/195 (63.08%), Postives = 141/195 (72.31%), Query Frame = 0
Query: 1 MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDY 60
ME +RPISCCNV+YKCISKILADR+ VWLPS IS NQSAF+ GRSI+DNILLCQE+VG Y
Sbjct: 197 MEEFRPISCCNVIYKCISKILADRICVWLPSFISSNQSAFMPGRSIIDNILLCQELVGGY 256
Query: 61 HGSSGPPRCAMKL-----------------------------SGLIANLEKSSMFMAGVD 120
H + G PR +K+ SGL ANL KSS+F+AGV
Sbjct: 257 HLNFGKPRYTLKVDLQKAYDSVNWDFLFGLLIAIGTPLKFVTSGLFANLRKSSIFVAGVS 316
Query: 121 IEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAG 167
E A+ LA SMGF LG LPVRYLG+PLL+GRLRS++CAPLIQRITS IRSW+ARVLSF G
Sbjct: 317 HEAASHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFG 376
BLAST of PI0007006 vs. NCBI nr
Match:
XP_031740402.1 (uncharacterized protein LOC116403409 [Cucumis sativus] >XP_031740413.1 uncharacterized protein LOC116403417 [Cucumis sativus] >XP_031745405.1 uncharacterized protein LOC116405607 [Cucumis sativus] >XP_031745422.1 uncharacterized protein LOC116405638 [Cucumis sativus] >XP_031745640.1 uncharacterized protein LOC116406072 [Cucumis sativus])
HSP 1 Score: 226.9 bits (577), Expect = 1.3e-55
Identity = 123/214 (57.48%), Postives = 142/214 (66.36%), Query Frame = 0
Query: 1 MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDY 60
+E + PISCC+V+YKCIS+ILADRLRVWLPS +SGNQ AF+ GRSI+DNILLCQE+VG Y
Sbjct: 302 LEDFSPISCCSVIYKCISRILADRLRVWLPSFVSGNQPAFIPGRSIIDNILLCQELVGAY 361
Query: 61 HGSSGPPRCAMK------------------------------------------------ 120
H G PRC MK
Sbjct: 362 HLHRGKPRCTMKVDLQKAYDYVNWDFLFGLLIAIDDLMIFCTADNHSMSFIKETIKRFGE 421
Query: 121 LSGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLI 167
LSGL ANL KS +F+ GV+ A+ LA +MGF++G LPVRYLG+PLLS RLRSS+C PLI
Sbjct: 422 LSGLFANLAKSLIFLVGVNSSKASRLAANMGFSIGHLPVRYLGLPLLSRRLRSSDCDPLI 481
BLAST of PI0007006 vs. NCBI nr
Match:
XP_016902060.1 (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])
HSP 1 Score: 222.2 bits (565), Expect = 3.2e-54
Identity = 120/191 (62.83%), Postives = 138/191 (72.25%), Query Frame = 0
Query: 1 MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDY 60
ME +RPISCCNV+YKCISKILADR+ VWLPS IS NQSAF+ GRSI+DNILLCQE+VG Y
Sbjct: 197 MEEFRPISCCNVIYKCISKILADRICVWLPSFISSNQSAFMPGRSIIDNILLCQELVGGY 256
Query: 61 HGSSGPPRCAMK--------------LSGLI-----------ANLEKSSMFMAGVDIEVA 120
H + G PR +K L GL+ KSS+F+AGV E A
Sbjct: 257 HLNFGKPRYTLKVDLQKAYDSVNWDFLFGLLIAIGTPLKFERCKARKSSIFVAGVSHEAA 316
Query: 121 TVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQL 167
+ LA SMGF LG LPVRYLG+PLL+GRLRS++CAPLIQRITS IRSW+ARVLSF G LQL
Sbjct: 317 SHLAASMGFGLGNLPVRYLGLPLLTGRLRSNDCAPLIQRITSWIRSWTARVLSFFGTLQL 376
BLAST of PI0007006 vs. NCBI nr
Match:
XP_031745634.1 (uncharacterized protein LOC116406053 [Cucumis sativus])
HSP 1 Score: 220.3 bits (560), Expect = 1.2e-53
Identity = 115/174 (66.09%), Postives = 135/174 (77.59%), Query Frame = 0
Query: 1 MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDY 60
+E + PISCC+V+YKCIS+ILADRLRVWLPS +SGNQ AF+ GRSI+DNILLCQE+VG Y
Sbjct: 639 LEDFSPISCCSVIYKCISRILADRLRVWLPSFVSGNQPAFIPGRSIIDNILLCQELVGAY 698
Query: 61 HGSSGPPRCAMKLSGLIANLEKSSMFMAGVDIEVATV--------LADSMGFALGTLPVR 120
H G PRC MK+ A + F+ G+ I + T LA +MGF++G LPVR
Sbjct: 699 HLHRGKPRCTMKVDLQKAYDYVNWDFLFGLLIAIGTPLRFFESSRLAANMGFSIGHLPVR 758
Query: 121 YLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVF 167
YLG+PLLS RLRSS+C PLIQRITSRIRSWSARVLSFAGRLQLVRSVLRS QV+
Sbjct: 759 YLGLPLLSRRLRSSDCDPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSLQVY 812
BLAST of PI0007006 vs. NCBI nr
Match:
XP_008452126.1 (PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo])
HSP 1 Score: 214.5 bits (545), Expect = 6.7e-52
Identity = 124/237 (52.32%), Postives = 143/237 (60.34%), Query Frame = 0
Query: 1 MEHYRPISCCNVVYKCISKILADRLRVWLPSLISGNQSAFVVGRSIVDNILLCQEMVGDY 60
+E +RPISCCNV+YKCISKILADRLRVWLPS IS NQSAF++GRSI++NILLCQE+VG Y
Sbjct: 399 LEDFRPISCCNVLYKCISKILADRLRVWLPSFISSNQSAFILGRSIIENILLCQELVGGY 458
Query: 61 HGSSGPPRCAMK------------------------------------------------ 120
H +SG PRC +K
Sbjct: 459 HLNSGKPRCTLKVDLQKAYDSVNWDFLFGLQISISTPLKKGVRQGDPLSLFLFVMVMEVL 518
Query: 121 -----------------------LSGLIANLEKSSMFMAGVDIEVATVLADSMGFALGTL 167
LSGL AN KSS+F+AGV+ E A+ LA MGF G L
Sbjct: 519 SRMLNKIPQSFQFHHRCEKRFGELSGLFANPRKSSIFIAGVNNENASRLAACMGFVRGNL 578
BLAST of PI0007006 vs. TAIR 10
Match:
AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 74.3 bits (181), Expect = 1.0e-13
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 0
Query: 87 MAGVDIEVATVLADSMGFALGTLPVRYLGVPLLSGRLRSSNCAPLIQRITSRIRSWSARV 146
MAGV + S FA G LPVRYLG+PLL+ ++ +S+ PL+++I RI W+AR
Sbjct: 1 MAGVKDNDKADILHSFPFASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARH 60
Query: 147 LSFAGRLQLVRSVLRSFQVF 167
LSFAGRLQL+ SV+ S F
Sbjct: 61 LSFAGRLQLISSVIHSLTNF 80
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V4C1 | 3.4e-57 | 63.08 | Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... | [more] |
A0A1S4E258 | 1.6e-54 | 62.83 | uncharacterized protein LOC103496880 OS=Cucumis melo OX=3656 GN=LOC103496880 PE=... | [more] |
A0A1S3BSI8 | 3.3e-52 | 52.32 | uncharacterized protein LOC103493225 OS=Cucumis melo OX=3656 GN=LOC103493225 PE=... | [more] |
A0A5A7V5J2 | 1.0e-50 | 52.65 | Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... | [more] |
A0A5A7UP65 | 7.5e-49 | 46.62 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060725.1 | 7.0e-57 | 63.08 | uncharacterized protein E6C27_scaffold72G00120 [Cucumis melo var. makuwa] >TYK01... | [more] |
XP_031740402.1 | 1.3e-55 | 57.48 | uncharacterized protein LOC116403409 [Cucumis sativus] >XP_031740413.1 uncharact... | [more] |
XP_016902060.1 | 3.2e-54 | 62.83 | PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo] | [more] |
XP_031745634.1 | 1.2e-53 | 66.09 | uncharacterized protein LOC116406053 [Cucumis sativus] | [more] |
XP_008452126.1 | 6.7e-52 | 52.32 | PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo] | [more] |
Match Name | E-value | Identity | Description | |
AT3G24255.1 | 1.0e-13 | 50.00 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |