PI0007003 (gene) Melon (PI 482460) v1

Overview


Name	PI0007003
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr02: 12581666 .. 12582245 (+)
RNA-Seq Expression	PI0007003
Synteny	PI0007003

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCTCAGACCGTCAAGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGTCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTAAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGCAGGAGATGTTTGGACAACCGTCCATTCAAATTCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACATGGCAGAAATGAACGAGACGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAAAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTGGTCTCTTATGA

mRNA sequence

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCTCAGACCGTCAAGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGAGATGTTTGGACAACCGTCCATTCAAATTCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACATGGCAGAAATGAACGAGACGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAAAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTGGTCTCTTATGA

Coding sequence (CDS)

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACTGGTGATAATTATGCGACGTGGAAATCGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCTCAGACCGTCAAGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGAGATGTTTGGACAACCGTCCATTCAAATTCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACATGGCAGAAATGAACGAGACGGTCATTGACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAAAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTGGTCTCTTATGA

Protein sequence

MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYDRWTKANEKEMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTFGLL

Homology

[Close]

BLAST of PI0007003 vs. ExPASy TrEMBL
Match: A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60
Identity = 129/192 (67.19%), Postives = 144/192 (75.00%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+VKDAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEK-------------------------------EMFGQPSIQIRHEAIKYVYNA 120
            WTKAN+K                               EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKY 162
           RMKEGQSVREHVL M+V FN+AEMN+ + DE+SQVS+IL+SL KSFLQF SN  MNKI+Y
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEY 180

[Close]

BLAST of PI0007003 vs. ExPASy TrEMBL
Match: A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60
Identity = 129/192 (67.19%), Postives = 144/192 (75.00%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+VKDAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEK-------------------------------EMFGQPSIQIRHEAIKYVYNA 120
            WTKAN+K                               EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKY 162
           RMKEGQSVREHVL M+V FN+AEMN+ + DE+SQVS+IL+SL KSFLQF SN  MNKI+Y
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEY 180

[Close]

BLAST of PI0007003 vs. ExPASy TrEMBL
Match: A0A5D3BE74 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00490 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.1e-55
Identity = 110/167 (65.87%), Postives = 136/167 (81.44%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRF L+EECP  P  NA++TV++AY+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFDLVEECPQVPAANATRTVREAYE 60

Query: 61  RWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMN 120
           RW KANEK          + S QI+H+A+KY+YNARM EG S+REHVL+MMV FNMAEMN
Sbjct: 61  RWAKANEKARAYILASLSEASYQIKHDALKYIYNARMNEGASIREHVLNMMVHFNMAEMN 120

Query: 121 ETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF 162
           E VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Sbjct: 121 EAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 167

[Close]

BLAST of PI0007003 vs. ExPASy TrEMBL
Match: A0A5A7V5A8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G00150 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 4.1e-55
Identity = 110/167 (65.87%), Postives = 136/167 (81.44%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRF L+EECP  P  NA++TV++AY+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFDLVEECPQVPAANATRTVREAYE 60

Query: 61  RWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMN 120
           RW KANEK          + S QI+H+A+KY+YNARM EG S+REHVL+MMV FNMAEMN
Sbjct: 61  RWAKANEKARAYILASLSEASYQIKHDALKYIYNARMNEGASIREHVLNMMVHFNMAEMN 120

Query: 121 ETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF 162
           E VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Sbjct: 121 EAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 167

[Close]

BLAST of PI0007003 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 2.0e-54
Identity = 114/192 (59.38%), Postives = 139/192 (72.40%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TV++ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWTKANEK-------------------------------EMFGQPSIQIRHEAIKYVYNA 120
           RW KANEK                               EMFGQ S QI+H+A+KY+YNA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKY 162
           RM EG SVREHVL+MMV FN+AEMN  VIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

[Close]

BLAST of PI0007003 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 5.1e-60
Identity = 129/192 (67.19%), Postives = 144/192 (75.00%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+VKDAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEK-------------------------------EMFGQPSIQIRHEAIKYVYNA 120
            WTKAN+K                               EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKY 162
           RMKEGQSVREHVL M+V FN+AEMN+ + DE+SQVS+IL+SL KSFLQF SN  MNKI+Y
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEY 180

[Close]

BLAST of PI0007003 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 5.1e-60
Identity = 129/192 (67.19%), Postives = 144/192 (75.00%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
           MSSSIIALLK ++LTG+NYATWKS LNMILVI DLRFVLMEECPP P +NASQ+VKDAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEK-------------------------------EMFGQPSIQIRHEAIKYVYNA 120
            WTKAN+K                               EMFGQPSIQI+ EAIKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKY 162
           RMKEGQSVREHVL M+V FN+AEMN+ + DE+SQVS+IL+SL KSFLQF SN  MNKI+Y
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKSQVSYILKSLSKSFLQFCSNVKMNKIEY 180

[Close]

BLAST of PI0007003 vs. NCBI nr
Match: TYJ96755.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 224.2 bits (570), Expect = 8.4e-55
Identity = 110/167 (65.87%), Postives = 136/167 (81.44%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRF L+EECP  P  NA++TV++AY+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFDLVEECPQVPAANATRTVREAYE 60

Query: 61  RWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMN 120
           RW KANEK          + S QI+H+A+KY+YNARM EG S+REHVL+MMV FNMAEMN
Sbjct: 61  RWAKANEKARAYILASLSEASYQIKHDALKYIYNARMNEGASIREHVLNMMVHFNMAEMN 120

Query: 121 ETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF 162
           E VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Sbjct: 121 EAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 167

[Close]

BLAST of PI0007003 vs. NCBI nr
Match: KAA0062798.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 224.2 bits (570), Expect = 8.4e-55
Identity = 110/167 (65.87%), Postives = 136/167 (81.44%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRF L+EECP  P  NA++TV++AY+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFDLVEECPQVPAANATRTVREAYE 60

Query: 61  RWTKANEK------EMFGQPSIQIRHEAIKYVYNARMKEGQSVREHVLDMMVQFNMAEMN 120
           RW KANEK          + S QI+H+A+KY+YNARM EG S+REHVL+MMV FNMAEMN
Sbjct: 61  RWAKANEKARAYILASLSEASYQIKHDALKYIYNARMNEGASIREHVLNMMVHFNMAEMN 120

Query: 121 ETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKYTMTTLLNELQTF 162
           E VIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNELQTF
Sbjct: 121 EAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTF 167

[Close]

BLAST of PI0007003 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 221.9 bits (564), Expect = 4.2e-54
Identity = 114/192 (59.38%), Postives = 139/192 (72.40%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKSNLNMILVIDDLRFVLMEECPPSPVRNASQTVKDAYD 60
           M+S+ + +L  +KL G+NYA+WK+ +N +L+IDDLRFVL+EECP  P  NA++TV++ Y+
Sbjct: 1   MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60

Query: 61  RWTKANEK-------------------------------EMFGQPSIQIRHEAIKYVYNA 120
           RW KANEK                               EMFGQ S QI+H+A+KY+YNA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNMAEMNETVIDEQSQVSFILESLPKSFLQFRSNAVMNKIKY 162
           RM EG SVREHVL+MMV FN+AEMN  VIDE SQVSFILESLP+SFLQFRSNAVMNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180

The following BLAST results are available for this feature:

BLAST of PI0007003 vs.


Match Name	E-value	Identity	Description

BLAST of PI0007003 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0D9	2.5e-60	67.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210...	[more]
A0A5A7VA67	2.5e-60	67.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011...	[more]
A0A5D3BE74	4.1e-55	65.87	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G0049...	[more]
A0A5A7V5A8	4.1e-55	65.87	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold357G0015...	[more]
A0A5A7SMH8	2.0e-54	59.38	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]

BLAST of PI0007003 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063887.1	5.1e-60	67.19	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	5.1e-60	67.19	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ96755.1	8.4e-55	65.87	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062798.1	8.4e-55	65.87	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0044955.1	4.2e-54	59.38	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0007003 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 55..159 e-value: 1.3E-11 score: 44.4
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 7..161
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 7..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0007003.1	PI0007003.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003676	nucleic acid binding