PI0006945 (gene) Melon (PI 482460) v1

Overview


Name	PI0006945
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase
Location	chr04: 16153157 .. 16153618 (+)
RNA-Seq Expression	PI0006945
Synteny	PI0006945

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCAAAAGCTTTCGGAATTGGGGATCTCTGGTACCAAAGAATGTGGAGAAACATTTGCAAAAGGGCTGCTTCAAGGAAAGCTACATTATTCTCCAAGTTGTCTTCTTCTAGCTCAAGAAAAGTTACTGAAGACTATATCTTTCTTGATCAAATTAGATCTTCTAGGTCGCTAAAAAGCTTGAACGCTTGTTGCCAATCAGGGGGTTCTAGTAGAATCGGCTTTCTCCATCCCCGCAAAGTTGGATTTACGAACTCCAATTTCCCACATTCAAGCAATCCCGTGGCGTTTTATGGGGTTCTAGACCATGCTAAAGGCTATGCTACTGCTGCCAAGGCAGCCATTGTCGAAGGGGATTTATTGGGTTTCGAAGAAATTCAGGAAATGATGGAGGAGCTCAGCAAACAAGATAAGGTGGAGCCTCACTTTAAGAAGCCTAGAGGATGGTCAATGGAATAG

mRNA sequence

ATGACATCAAAAGCTTTCGGAATTGGGGATCTCTGGTACCAAAGAATGTGGAGAAACATTTGCAAAAGGGCTGCTTCAAGGAAAGCTACATTATTCTCCAAGTTGTCTTCTTCTAGCTCAAGAAAAGTTACTGAAGACTATATCTTTCTTGATCAAATTAGATCTTCTAGGTCGCTAAAAAGCTTGAACGCTTGTTGCCAATCAGGGGGTTCTAGTAGAATCGGCTTTCTCCATCCCCGCAAAGTTGGATTTACGAACTCCAATTTCCCACATTCAAGCAATCCCGTGGCGTTTTATGGGGTTCTAGACCATGCTAAAGGCTATGCTACTGCTGCCAAGGCAGCCATTGTCGAAGGGGATTTATTGGGTTTCGAAGAAATTCAGGAAATGATGGAGGAGCTCAGCAAACAAGATAAGGTGGAGCCTCACTTTAAGAAGCCTAGAGGATGGTCAATGGAATAG

Coding sequence (CDS)

ATGACATCAAAAGCTTTCGGAATTGGGGATCTCTGGTACCAAAGAATGTGGAGAAACATTTGCAAAAGGGCTGCTTCAAGGAAAGCTACATTATTCTCCAAGTTGTCTTCTTCTAGCTCAAGAAAAGTTACTGAAGACTATATCTTTCTTGATCAAATTAGATCTTCTAGGTCGCTAAAAAGCTTGAACGCTTGTTGCCAATCAGGGGGTTCTAGTAGAATCGGCTTTCTCCATCCCCGCAAAGTTGGATTTACGAACTCCAATTTCCCACATTCAAGCAATCCCGTGGCGTTTTATGGGGTTCTAGACCATGCTAAAGGCTATGCTACTGCTGCCAAGGCAGCCATTGTCGAAGGGGATTTATTGGGTTTCGAAGAAATTCAGGAAATGATGGAGGAGCTCAGCAAACAAGATAAGGTGGAGCCTCACTTTAAGAAGCCTAGAGGATGGTCAATGGAATAG

Protein sequence

MTSKAFGIGDLWYQRMWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIGFLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAAIVEGDLLGFEEIQEMMEELSKQDKVEPHFKKPRGWSME

Homology

[Close]

BLAST of PI0006945 vs. ExPASy TrEMBL
Match: A0A5A7SYG2 (DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00320 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.4e-54
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 16  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIG 75
           MWRN+ KRAASRKATLFS+LSSS+SRKVTED+IFLDQIR SRSL++LN CCQSG SSRI 
Sbjct: 1   MWRNVLKRAASRKATLFSELSSSTSRKVTEDHIFLDQIRYSRSLETLNTCCQSGDSSRIS 60

Query: 76  FLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAAIVEGDLLGFEEIQEMMEELS 135
           FLHP+KVGFTNSNFPHSSNPVAFYGVL+HA+GYATAA+AAI EGDL G EEIQE+ME +S
Sbjct: 61  FLHPQKVGFTNSNFPHSSNPVAFYGVLNHAEGYATAAEAAISEGDLSGSEEIQEIMEGIS 120

Query: 136 KQDKVEPHFKKPR 149
           KQDKVEPHFKKP+
Sbjct: 121 KQDKVEPHFKKPK 133

[Close]

BLAST of PI0006945 vs. ExPASy TrEMBL
Match: A0A1S3BF59 (DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103489205 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.4e-54
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 16  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIG 75
           MWRN+ KRAASRKATLFS+LSSS+SRKVTED+IFLDQIR SRSL++LN CCQSG SSRI 
Sbjct: 1   MWRNVLKRAASRKATLFSELSSSTSRKVTEDHIFLDQIRYSRSLETLNTCCQSGDSSRIS 60

Query: 76  FLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAAIVEGDLLGFEEIQEMMEELS 135
           FLHP+KVGFTNSNFPHSSNPVAFYGVL+HA+GYATAA+AAI EGDL G EEIQE+ME +S
Sbjct: 61  FLHPQKVGFTNSNFPHSSNPVAFYGVLNHAEGYATAAEAAISEGDLSGSEEIQEIMEGIS 120

Query: 136 KQDKVEPHFKKPR 149
           KQDKVEPHFKKP+
Sbjct: 121 KQDKVEPHFKKPK 133

[Close]

BLAST of PI0006945 vs. ExPASy TrEMBL
Match: A0A1S3BF55 (DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103489205 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.4e-54
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 16  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIG 75
           MWRN+ KRAASRKATLFS+LSSS+SRKVTED+IFLDQIR SRSL++LN CCQSG SSRI 
Sbjct: 1   MWRNVLKRAASRKATLFSELSSSTSRKVTEDHIFLDQIRYSRSLETLNTCCQSGDSSRIS 60

Query: 76  FLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAAIVEGDLLGFEEIQEMMEELS 135
           FLHP+KVGFTNSNFPHSSNPVAFYGVL+HA+GYATAA+AAI EGDL G EEIQE+ME +S
Sbjct: 61  FLHPQKVGFTNSNFPHSSNPVAFYGVLNHAEGYATAAEAAISEGDLSGSEEIQEIMEGIS 120

Query: 136 KQDKVEPHFKKPR 149
           KQDKVEPHFKKP+
Sbjct: 121 KQDKVEPHFKKPK 133

[Close]

BLAST of PI0006945 vs. ExPASy TrEMBL
Match: A0A0A0KR04 (DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G607420 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.0e-52
Identity = 109/134 (81.34%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 16  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIG 75
           MWRN+ K AASRKA LFS+ SSS+SRKVTED+IFLDQIRSSRSL++LN CCQSGGSSRI 
Sbjct: 1   MWRNVFKTAASRKAKLFSEFSSSTSRKVTEDHIFLDQIRSSRSLETLNTCCQSGGSSRII 60

Query: 76  FLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAAIVEGDLLGFEEIQEMMEELS 135
           FLHP+KVGFTNSNFPHSSNPV FYGVL HAKGYATAA+AAI EGDL G EEIQE+ME L+
Sbjct: 61  FLHPQKVGFTNSNFPHSSNPVPFYGVLYHAKGYATAAEAAIFEGDLSGSEEIQEIMEGLN 120

Query: 136 KQDKVEPHFKKPRG 150
           KQDKVE HFK+P+G
Sbjct: 121 KQDKVELHFKQPKG 134

[Close]

BLAST of PI0006945 vs. ExPASy TrEMBL
Match: A0A6J1HS83 (DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111467347 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.7e-37
Identity = 88/133 (66.17%), Postives = 101/133 (75.94%), Query Frame = 0


Query: 16  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIG 75
           MWRNI KRAASR+ T F       SRKV ED IF+++IRSSR+L SL +CC   GS  I 
Sbjct: 1   MWRNIVKRAASRRDTFF-------SRKVIEDSIFVEEIRSSRTLGSLKSCCLLEGSRGIN 60

Query: 76  FLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAAIVEGDLLGFEEIQEMMEELS 135
           F H R+VGF  SN  HSS P+AFYGVL+HAKGYATAA+AAI E DL G EEIQE+MEELS
Sbjct: 61  FFHSREVGFAKSNCAHSSEPLAFYGVLNHAKGYATAAEAAISEEDLSGSEEIQELMEELS 120

Query: 136 KQDKVEPHFKKPR 149
           KQDKVE HFK+P+
Sbjct: 121 KQDKVESHFKQPK 126

[Close]

BLAST of PI0006945 vs. NCBI nr
Match: XP_008446483.1 (PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 222.2 bits (565), Expect = 3.0e-54
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 16  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIG 75
           MWRN+ KRAASRKATLFS+LSSS+SRKVTED+IFLDQIR SRSL++LN CCQSG SSRI 
Sbjct: 1   MWRNVLKRAASRKATLFSELSSSTSRKVTEDHIFLDQIRYSRSLETLNTCCQSGDSSRIS 60

Query: 76  FLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAAIVEGDLLGFEEIQEMMEELS 135
           FLHP+KVGFTNSNFPHSSNPVAFYGVL+HA+GYATAA+AAI EGDL G EEIQE+ME +S
Sbjct: 61  FLHPQKVGFTNSNFPHSSNPVAFYGVLNHAEGYATAAEAAISEGDLSGSEEIQEIMEGIS 120

Query: 136 KQDKVEPHFKKPR 149
           KQDKVEPHFKKP+
Sbjct: 121 KQDKVEPHFKKPK 133

[Close]

BLAST of PI0006945 vs. NCBI nr
Match: XP_008446482.1 (PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 222.2 bits (565), Expect = 3.0e-54
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 16  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIG 75
           MWRN+ KRAASRKATLFS+LSSS+SRKVTED+IFLDQIR SRSL++LN CCQSG SSRI 
Sbjct: 1   MWRNVLKRAASRKATLFSELSSSTSRKVTEDHIFLDQIRYSRSLETLNTCCQSGDSSRIS 60

Query: 76  FLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAAIVEGDLLGFEEIQEMMEELS 135
           FLHP+KVGFTNSNFPHSSNPVAFYGVL+HA+GYATAA+AAI EGDL G EEIQE+ME +S
Sbjct: 61  FLHPQKVGFTNSNFPHSSNPVAFYGVLNHAEGYATAAEAAISEGDLSGSEEIQEIMEGIS 120

Query: 136 KQDKVEPHFKKPR 149
           KQDKVEPHFKKP+
Sbjct: 121 KQDKVEPHFKKPK 133

[Close]

BLAST of PI0006945 vs. NCBI nr
Match: KAA0034491.1 (DNA-directed RNA polymerase 1B [Cucumis melo var. makuwa] >TYK09045.1 DNA-directed RNA polymerase 1B [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 3.0e-54
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 16  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIG 75
           MWRN+ KRAASRKATLFS+LSSS+SRKVTED+IFLDQIR SRSL++LN CCQSG SSRI 
Sbjct: 1   MWRNVLKRAASRKATLFSELSSSTSRKVTEDHIFLDQIRYSRSLETLNTCCQSGDSSRIS 60

Query: 76  FLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAAIVEGDLLGFEEIQEMMEELS 135
           FLHP+KVGFTNSNFPHSSNPVAFYGVL+HA+GYATAA+AAI EGDL G EEIQE+ME +S
Sbjct: 61  FLHPQKVGFTNSNFPHSSNPVAFYGVLNHAEGYATAAEAAISEGDLSGSEEIQEIMEGIS 120

Query: 136 KQDKVEPHFKKPR 149
           KQDKVEPHFKKP+
Sbjct: 121 KQDKVEPHFKKPK 133

[Close]

BLAST of PI0006945 vs. NCBI nr
Match: XP_004135424.3 (DNA-directed RNA polymerase 1B, mitochondrial [Cucumis sativus] >KAE8648775.1 hypothetical protein Csa_008524 [Cucumis sativus])

HSP 1 Score: 214.5 bits (545), Expect = 6.2e-52
Identity = 109/134 (81.34%), Postives = 121/134 (90.30%), Query Frame = 0


Query: 16  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIG 75
           MWRN+ K AASRKA LFS+ SSS+SRKVTED+IFLDQIRSSRSL++LN CCQSGGSSRI 
Sbjct: 1   MWRNVFKTAASRKAKLFSEFSSSTSRKVTEDHIFLDQIRSSRSLETLNTCCQSGGSSRII 60

Query: 76  FLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAAIVEGDLLGFEEIQEMMEELS 135
           FLHP+KVGFTNSNFPHSSNPV FYGVL HAKGYATAA+AAI EGDL G EEIQE+ME L+
Sbjct: 61  FLHPQKVGFTNSNFPHSSNPVPFYGVLYHAKGYATAAEAAIFEGDLSGSEEIQEIMEGLN 120

Query: 136 KQDKVEPHFKKPRG 150
           KQDKVE HFK+P+G
Sbjct: 121 KQDKVELHFKQPKG 134

[Close]

BLAST of PI0006945 vs. NCBI nr
Match: XP_038892390.1 (DNA-directed RNA polymerase 1B, mitochondrial [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 2.7e-39
Identity = 91/133 (68.42%), Postives = 103/133 (77.44%), Query Frame = 0


Query: 16  MWRNICKRAASRKATLFSKLSSSSSRKVTEDYIFLDQIRSSRSLKSLNACCQSGGSSRIG 75
           MWRNI KR ASRK T FS+LSSS              IRSSR+L+SLN CCQS  S RI 
Sbjct: 1   MWRNIVKRIASRKTTFFSELSSS--------------IRSSRTLESLNTCCQSAVSRRIS 60

Query: 76  FLHPRKVGFTNSNFPHSSNPVAFYGVLDHAKGYATAAKAAIVEGDLLGFEEIQEMMEELS 135
           FLHP KVGFTNS+FPHSSNPVAFYGVL+HA GYATAA+AAI E DL G EEIQE++EELS
Sbjct: 61  FLHPHKVGFTNSSFPHSSNPVAFYGVLNHANGYATAAEAAISEEDLSGSEEIQELLEELS 119

Query: 136 KQDKVEPHFKKPR 149
           KQ+K+E HFK+P+
Sbjct: 121 KQEKIESHFKQPK 119

The following BLAST results are available for this feature:

BLAST of PI0006945 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006945 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYG2	1.4e-54	83.46	DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BF59	1.4e-54	83.46	DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103489205 PE=3 SV=1	[more]
A0A1S3BF55	1.4e-54	83.46	DNA-directed RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103489205 PE=3 SV=1	[more]
A0A0A0KR04	3.0e-52	81.34	DNA-directed RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G607420 PE=3 SV=1	[more]
A0A6J1HS83	4.7e-37	66.17	DNA-directed RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111467347 PE=3 SV=...	[more]

BLAST of PI0006945 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446483.1	3.0e-54	83.46	PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial isoform X2 [Cucumis mel...	[more]
XP_008446482.1	3.0e-54	83.46	PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial isoform X1 [Cucumis mel...	[more]
KAA0034491.1	3.0e-54	83.46	DNA-directed RNA polymerase 1B [Cucumis melo var. makuwa] >TYK09045.1 DNA-direct...	[more]
XP_004135424.3	6.2e-52	81.34	DNA-directed RNA polymerase 1B, mitochondrial [Cucumis sativus] >KAE8648775.1 hy...	[more]
XP_038892390.1	2.7e-39	68.42	DNA-directed RNA polymerase 1B, mitochondrial [Benincasa hispida]	[more]

BLAST of PI0006945 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006945.1	PI0006945.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006390	mitochondrial transcription
cellular_component	GO:0034245	mitochondrial DNA-directed RNA polymerase complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity