PI0006940 (gene) Melon (PI 482460) v1

Overview
NamePI0006940
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionChlorophyll a/b-binding family protein
Locationchr01: 14824670 .. 14826037 (-)
RNA-Seq ExpressionPI0006940
SyntenyPI0006940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGGCACAATGGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTCAGACAATTGCAGAAAAACAAGCAAAGGAGAGAGAGGAAGGAGCTTCTTAACCTATTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAAACGGCTCGTCGACCTCAAGAGATTTGGATTCCAATTCCCTCTCCCTTGGTTTGAACTTGAAGAATAATGCAGGTAAGCAAGTTGATAGTGATATCCATGAAGCCAGGTCGATGCCAGGTGACACCAAGTTCGGGCTCGGAAACTCATTCATGGTGAGTACATTAAGAAGTTTCGATAGTCCAAATGTCGATACCACTCTTCATCTATAGATAATATCTTCACCTAGTATTTCTGTTAGTTTTATTTGCTTGGTTCTCTCCCCACCTAAGAATGAACAAATGTGTGTTGAATTGATGTCTAATGTGATCAATATGCATTCTATTGATGATGTCCTAGACATTTTGTAAGATGTCTTTTTGCTTGGTTAGTTTATCTCCAGGAATGTGCATAATGAGAAAGAGAGGGAAGGGAAGTGATGGAAAAACAACTCTTAAATGAGACCATCTCTTTTACTAATTCCATTATGTTTAAATCTCTCTTTTTCTTTGGGTATCTTAGTTTCATCATTCTTCTTGGTATAAAAGCTTTGTGTTAAGGTGCACATAAATTGGCTTGAGCTTCATTCTCTTGGCATGTTTATTTTAAAACTCAATTATTTATGCATATGATTTCAATTTTGAAGTGTTAAGGGTTGTATTTGTCACATTGAAACTATTTATACAGTACAAGATGTCTATGAAAATGGCCCCATTTATTATTTTATTTTCTAAAATTTGGTTTTCAATTTTTCACAAGTGAACTTATTTGTTTAGAAGCGAATTTCTGTTGAAACTTTGGAAAAAAAAAAAAGAGTTTCAAATAATTGCTTTTGTTTTTATCATTGAACTGCTAGTGTTTTTGAAGAAAAGTTTGAATCTAATTTATATGTAAATAAACCTTTTGATTTGGCACACTTTAGATTTGCCATGTGCAATTGTATGTCTCGCTGGTTATCACATTGCAATCTTGTGAACTGGTTTTATTAGAAGAGTGACTACAACAAGTTCAGTGCTAATTCTTTTAGGGGACGTTTGACTCAAGGAATTGCTGGAGTAAAATTCTTGGAGTTAAGAACTTTACATATTTGGCTCAAAGATTTCTTGGACTCCACGACTAAAAGCGTTAATTTTATGATTTATTAACTATACTATAATTCTAATTCGTTCACGTACTTGTACCAAATAATAAATGACATTTTAACTCTTCAATGCTCGATAAAT

mRNA sequence

ATGGGTAGGCACAATGGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTCAGACAATTGCAGAAAAACAAGCAAAGGAGAGAGAGGAAGGAGCTTCTTAACCTATTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAAACGGCTCGTCGACCTCAAGAGATTTGGATTCCAATTCCCTCTCCCTTGGTTTGAACTTGAAGAATAATGCAGGTAAGCAAGTTGATAGTGATATCCATGAAGCCAGGTCGATGCCAGGTGACACCAAGTTCGGGCTCGGAAACTCATTCATGGGGACGTTTGACTCAAGGAATTGCTGGAGTAAAATTCTTGGAGTTAAGAACTTTACATATTTGGCTCAAAGATTTCTTGGACTCCACGACTAAAAGCGTTAATTTTATGATTTATTAACTATACTATAATTCTAATTCGTTCACGTACTTGTACCAAATAATAAATGACATTTTAACTCTTCAATGCTCGATAAAT

Coding sequence (CDS)

ATGGGTAGGCACAATGGTGAACCTACCATGGTTGGTACCTCCATAGCTCTGTTACAAGAAAGATTCAGACAATTGCAGAAAAACAAGCAAAGGAGAGAGAGGAAGGAGCTTCTTAACCTATTATTCGAATCAAATAGGGTCGATGCCTCGATAATGCATTTAGAACCAAACGGCTCGTCGACCTCAAGAGATTTGGATTCCAATTCCCTCTCCCTTGGTTTGAACTTGAAGAATAATGCAGGTAAGCAAGTTGATAGTGATATCCATGAAGCCAGGTCGATGCCAGGTGACACCAAGTTCGGGCTCGGAAACTCATTCATGGGGACGTTTGACTCAAGGAATTGCTGGAGTAAAATTCTTGGAGTTAAGAACTTTACATATTTGGCTCAAAGATTTCTTGGACTCCACGACTAA

Protein sequence

MGRHNGEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSSTSRDLDSNSLSLGLNLKNNAGKQVDSDIHEARSMPGDTKFGLGNSFMGTFDSRNCWSKILGVKNFTYLAQRFLGLHD
Homology
BLAST of PI0006940 vs. ExPASy TrEMBL
Match: A0A0A0K617 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 3.1e-48
Identity = 107/118 (90.68%), Postives = 109/118 (92.37%), Query Frame = 0

Query: 1   MGRHNGEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
           MGRHN EPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60

Query: 61  TSRDLDSNSLSLGLNLKNNAGKQVDSDIHEARSMPGDTKFGLGNSFM----GTFDSRN 115
           TSRDLDSNSLSLGLNL+NNAGKQVD DIHEARSMPGDTKF LGNSFM     +FDS N
Sbjct: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFMVSTFRSFDSPN 118

BLAST of PI0006940 vs. ExPASy TrEMBL
Match: A0A5D3E685 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00780 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.1e-40
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0

Query: 1   MGRHNGEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL--EPNG 60
           MGRH+ EPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHL  EPNG
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 61  SSTSRDLDSNSLSLGLNLKNNAGKQVDSDIHEARSMPGDTKFGLGNSFM 108
           S T R LDSNSLSLGLNLK+N GKQVD DIHEARS+P DTKFG  NSFM
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFM 109

BLAST of PI0006940 vs. ExPASy TrEMBL
Match: A0A2P6S1J5 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0156651 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 49/95 (51.58%), Postives = 59/95 (62.11%), Query Frame = 0

Query: 1  MGRHNGEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
          MGRH+ +P MV +SIALLQERFRQLQK K+RRE ++LL  L E+ RV  S  H EP   S
Sbjct: 1  MGRHSSDPIMVSSSIALLQERFRQLQKVKERREEQQLLQFLSETERVAPSTRHFEPARPS 60

Query: 61 TSRDL----------DSNSLSLGLNLKNNAGKQVD 86
             D+            +SLSLGLNL+    KQVD
Sbjct: 61 FQSDMVLPLRPCTPAADSSLSLGLNLQ---PKQVD 92

BLAST of PI0006940 vs. ExPASy TrEMBL
Match: G7KEN3 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11418701 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 7.4e-10
Identity = 46/82 (56.10%), Postives = 53/82 (64.63%), Query Frame = 0

Query: 1  MGRHNGEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL-EPNGS 60
          MGR + +PTMV +SIALLQERFRQL+K K+RRE K+LL LL   N   AS   L  PN  
Sbjct: 1  MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSTENNTSASTQRLVVPNNR 60

Query: 61 STSRDLDSNSLSLGLNLKNNAG 82
           T  D    SLSLGLNL +  G
Sbjct: 61 QTHHD----SLSLGLNLTSKQG 78

BLAST of PI0006940 vs. ExPASy TrEMBL
Match: A0A2Z6PF68 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_254380 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-09
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 0

Query: 1  MGRHNGEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL-EPNGS 60
          MGR + +PTMV +SIALLQERFRQL+K K+RRE K+LL LL   +   AS   L  PN  
Sbjct: 1  MGRQDNDPTMVNSSIALLQERFRQLEKVKERREGKQLLRLLSSESNTSASQQRLVVPNNR 60

Query: 61 STSRDLDSNSLSLGLNLKNNAGKQVDS 87
           T  D    SLSLGLNL +  G  +++
Sbjct: 61 QTHHD----SLSLGLNLTSKQGDHMNT 83

BLAST of PI0006940 vs. NCBI nr
Match: KAE8646145.1 (hypothetical protein Csa_016195, partial [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 1.8e-47
Identity = 103/107 (96.26%), Postives = 104/107 (97.20%), Query Frame = 0

Query: 1   MGRHNGEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
           MGRHN EPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS
Sbjct: 1   MGRHNSEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60

Query: 61  TSRDLDSNSLSLGLNLKNNAGKQVDSDIHEARSMPGDTKFGLGNSFM 108
           TSRDLDSNSLSLGLNL+NNAGKQVD DIHEARSMPGDTKF LGNSFM
Sbjct: 61  TSRDLDSNSLSLGLNLENNAGKQVDIDIHEARSMPGDTKFELGNSFM 107

BLAST of PI0006940 vs. NCBI nr
Match: KAA0048752.1 (hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583.1 hypothetical protein E5676_scaffold172G00780 [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 6.4e-40
Identity = 94/109 (86.24%), Postives = 98/109 (89.91%), Query Frame = 0

Query: 1   MGRHNGEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHL--EPNG 60
           MGRH+ EPTMVGTSIALLQERFRQLQKNKQ+RERKELLNLLFESNRVDASIMHL  EPNG
Sbjct: 1   MGRHDSEPTMVGTSIALLQERFRQLQKNKQKRERKELLNLLFESNRVDASIMHLEPEPNG 60

Query: 61  SSTSRDLDSNSLSLGLNLKNNAGKQVDSDIHEARSMPGDTKFGLGNSFM 108
           S T R LDSNSLSLGLNLK+N GKQVD DIHEARS+P DTKFG  NSFM
Sbjct: 61  SLTLRVLDSNSLSLGLNLKHNEGKQVDIDIHEARSVPSDTKFGPENSFM 109

BLAST of PI0006940 vs. NCBI nr
Match: KAG6589104.1 (hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-23
Identity = 69/95 (72.63%), Postives = 83/95 (87.37%), Query Frame = 0

Query: 1  MGRHNGEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVD-ASIMHLEPNGS 60
          MGRH+ E TM+GTSIALLQERFRQLQK+KQRRE+KELL+LL +SNRV+ +SIMHLE N S
Sbjct: 1  MGRHSSETTMIGTSIALLQERFRQLQKDKQRREKKELLSLLSDSNRVNTSSIMHLESNRS 60

Query: 61 STSRDLDSNSLSLGLNLKNNAGKQVDSDIHEARSM 95
          S SRDL+ +SLSLGLN  ++AGKQV  DIHEAR++
Sbjct: 61 SNSRDLNPDSLSLGLN-SSSAGKQV--DIHEARAL 92

BLAST of PI0006940 vs. NCBI nr
Match: KAG6572236.1 (hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-18
Identity = 64/99 (64.65%), Postives = 71/99 (71.72%), Query Frame = 0

Query: 1   MGRHNGEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
           M RH+ EP +VGTSIALLQERFRQLQK K RRE+KE++ LL +SN +            S
Sbjct: 3   MSRHSSEPAIVGTSIALLQERFRQLQKEKVRREKKEVVKLLSDSNSL------------S 62

Query: 61  TSRDLDSNSLSLGLNLKNNAGKQVDSDIHEARSMPGDTK 100
           TSRDL  NSLSLGLNL  NAGKQVDS  HE R MPGDTK
Sbjct: 63  TSRDLAFNSLSLGLNL-GNAGKQVDS--HEGRLMPGDTK 86

BLAST of PI0006940 vs. NCBI nr
Match: PRQ52543.1 (hypothetical protein RchiOBHm_Chr2g0156651 [Rosa chinensis])

HSP 1 Score: 75.9 bits (185), Expect = 3.1e-10
Identity = 49/95 (51.58%), Postives = 59/95 (62.11%), Query Frame = 0

Query: 1  MGRHNGEPTMVGTSIALLQERFRQLQKNKQRRERKELLNLLFESNRVDASIMHLEPNGSS 60
          MGRH+ +P MV +SIALLQERFRQLQK K+RRE ++LL  L E+ RV  S  H EP   S
Sbjct: 1  MGRHSSDPIMVSSSIALLQERFRQLQKVKERREEQQLLQFLSETERVAPSTRHFEPARPS 60

Query: 61 TSRDL----------DSNSLSLGLNLKNNAGKQVD 86
             D+            +SLSLGLNL+    KQVD
Sbjct: 61 FQSDMVLPLRPCTPAADSSLSLGLNLQ---PKQVD 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6173.1e-4890.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G272125 PE=4 SV=1[more]
A0A5D3E6853.1e-4086.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2P6S1J51.5e-1051.58Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0156651 PE=4... [more]
G7KEN37.4e-1056.10Uncharacterized protein OS=Medicago truncatula OX=3880 GN=11418701 PE=4 SV=1[more]
A0A2Z6PF682.2e-0951.72Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_254380 PE=4 SV... [more]
Match NameE-valueIdentityDescription
KAE8646145.11.8e-4796.26hypothetical protein Csa_016195, partial [Cucumis sativus][more]
KAA0048752.16.4e-4086.24hypothetical protein E6C27_scaffold43G00600 [Cucumis melo var. makuwa] >TYK31583... [more]
KAG6589104.11.9e-2372.63hypothetical protein SDJN03_17669, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572236.11.1e-1864.65hypothetical protein SDJN03_28964, partial [Cucurbita argyrosperma subsp. sorori... [more]
PRQ52543.13.1e-1051.58hypothetical protein RchiOBHm_Chr2g0156651 [Rosa chinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..35
NoneNo IPR availablePANTHERPTHR34570OS03G0593100 PROTEINcoord: 1..109
NoneNo IPR availablePANTHERPTHR34570:SF12EXPRESSED PROTEINcoord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0006940.1PI0006940.1mRNA