PI0006853 (gene) Melon (PI 482460) v1

Overview
NamePI0006853
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr06: 23321254 .. 23321943 (+)
RNA-Seq ExpressionPI0006853
SyntenyPI0006853
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCTCTACATCACTCGATCGGGAGCAGTTGTGGGTCATCTGGTACGTATTTAAATATTGAATAATTACTTTAAATTATTTACTCAATTAACTATTCTCTAATTTTTTTACAATTCATAGAGATCGAACAACAAAAGACTTCGTGATGTTGTAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGAAGATACATTATATGTACAATGTACCAATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCACAATGTAGAAGAAGTACCTTCAATGACACTAACATAGAGTCAAACTGGTTATGGTAGCCCGATGATGATGATGCCAGCATTTAGAGTAGGATATTGTGATTTTAAGGTCGGAATAGGATATTATGACTTAGGGGTCAGTCCATCGTCTTCATACATGGATGTTGGACCATCAACTTCTTACATGCATGGACATGGGCACGGACATGGACGCAGCTGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTCCCAGATCCACAACAGTACCAACAAGAATCAAAGAATCAAGATGCGCCAGGGCAACCAAGAGTTCCGAGTCGACGACGACAACCAACTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA

mRNA sequence

ATGAGGCTCTACATCACTCGATCGGGAGCAGTTGTGGGTCATCTGAGATCGAACAACAAAAGACTTCGTGATGTTGTAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGAAGATACATTATATGTACAATGTACCAATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCACAATGTAGAAGAAGTCGGAATAGGATATTATGACTTAGGGGTCAGTCCATCGTCTTCATACATGGATGTTGGACCATCAACTTCTTACATGCATGGACATGGGCACGGACATGGACGCAGCTGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTCCCAGATCCACAACAGTACCAACAAGAATCAAAGAATCAAGATGCGCCAGGGCAACCAAGAGTTCCGAGTCGACGACGACAACCAACTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA

Coding sequence (CDS)

ATGAGGCTCTACATCACTCGATCGGGAGCAGTTGTGGGTCATCTGAGATCGAACAACAAAAGACTTCGTGATGTTGTAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGGAGAAGATACATTATATGTACAATGTACCAATTGTACCTCCACCAGTTAACAGGGGACGTGTTCGAGTGGAAGAACCTGAACTCGATGAAGTTTACCACAATGTAGAAGAAGTCGGAATAGGATATTATGACTTAGGGGTCAGTCCATCGTCTTCATACATGGATGTTGGACCATCAACTTCTTACATGCATGGACATGGGCACGGACATGGACGCAGCTGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTCCCAGATCCACAACAGTACCAACAAGAATCAAAGAATCAAGATGCGCCAGGGCAACCAAGAGTTCCGAGTCGACGACGACAACCAACTCGAAATCGACGACGTCCGGGTTGTGGAACACATTGA

Protein sequence

MRLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVYHNVEEVGIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH
Homology
BLAST of PI0006853 vs. ExPASy TrEMBL
Match: A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.5e-60
Identity = 132/202 (65.35%), Postives = 144/202 (71.29%), Query Frame = 0

Query: 2   RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNR 61
           RLYITR GA+VGHLRSNN RLRDVV+DPQQVLDICNNNERYMEKIH +Y++PIVPPPV+R
Sbjct: 303 RLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHR 362

Query: 62  GRVRVEEPELDEVYHNVE-------------------------------EVGIGYYDLGV 121
            R RVEE ELDEVYHNVE                               EV IGYYD  V
Sbjct: 363 ERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVV 422

Query: 122 SPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQ 173
            P SSYMDVGPSTSYM+GHG G+    GEHNEYLY+EAPTDV D Q+YQQE KNQ+   Q
Sbjct: 423 GPLSSYMDVGPSTSYMYGHGRGY----GEHNEYLYHEAPTDVSDRQEYQQEPKNQEDREQ 482

BLAST of PI0006853 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 6.4e-59
Identity = 131/202 (64.85%), Postives = 142/202 (70.30%), Query Frame = 0

Query: 2   RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNR 61
           RLYITR GA VG  RSNN RLRDV DD QQ LDICNNNERYME+IH MY++PIVPPPV+R
Sbjct: 27  RLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHR 86

Query: 62  GRVRVEEPELDEVYHNVE-------------------------------EVGIGYYDLGV 121
           G VRVEE ELD+VYHNVE                               EVGIGYYD GV
Sbjct: 87  GCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGV 146

Query: 122 SPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQ 173
            PSSSY+DV PSTSYMHGH  G+    GEHNEYLY+EAP DV D Q+YQQE +NQ+   Q
Sbjct: 147 GPSSSYVDVSPSTSYMHGHSRGY----GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQ 206

BLAST of PI0006853 vs. ExPASy TrEMBL
Match: A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.3e-53
Identity = 120/188 (63.83%), Postives = 131/188 (69.68%), Query Frame = 0

Query: 16  RSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVY 75
           RSNN RLRDV DD QQ LDICNNNERYME+IH MY++PIVPPPV+RG VRVEE ELD+VY
Sbjct: 27  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86

Query: 76  HNVE-------------------------------EVGIGYYDLGVSPSSSYMDVGPSTS 135
           HNVE                               EVGIGYYD GV PSSSY+DV PSTS
Sbjct: 87  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146

Query: 136 YMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNR 173
           YMHGH  G+    GEHNEYLY+EAP DV D Q+YQQE +NQ+   Q RV SRRRQPTRNR
Sbjct: 147 YMHGHRRGY----GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNR 206

BLAST of PI0006853 vs. ExPASy TrEMBL
Match: A0A5D3DFZ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00610 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.3e-53
Identity = 119/174 (68.39%), Postives = 132/174 (75.86%), Query Frame = 0

Query: 7   RSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRV 66
           RS   V  LRSNN RLRDV DDPQQVLDICNNNERYME+IH +Y++PIVPPP++RGRVRV
Sbjct: 24  RSEMFVTLLRSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRV 83

Query: 67  EEPELDEVYHNVEEV--------GIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCG 126
           EE ELDEVYH V+EV          GY   GV PSSSYMDV PSTSYMHGH  G+     
Sbjct: 84  EEAELDEVYHKVKEVHPMTQTQSQTGY---GVGPSSSYMDVDPSTSYMHGHERGY----E 143

Query: 127 EHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH 173
           EHNEYLY+EAP DV D Q+YQQE +NQ+   Q RV SRRRQP +NRRRPGCGTH
Sbjct: 144 EHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPAQNRRRPGCGTH 190

BLAST of PI0006853 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.6e-46
Identity = 110/186 (59.14%), Postives = 127/186 (68.28%), Query Frame = 0

Query: 2   RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNR 61
           RLYIT+ GA     RSNN RLRDV DD QQVLDICNNN+R+ME+IH MY++PIVPP ++R
Sbjct: 26  RLYITQLGAT----RSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHR 85

Query: 62  GRVRVEEPELDEVYHNVEEV----------------------GIG---------YYDLGV 121
           GRV+VEE ELDEVYHNVEE+                      G+G         YYD GV
Sbjct: 86  GRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGV 145

Query: 122 SPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQ 157
            PSSSYMDVGPSTSYMHGH H +    GEHNEYLY+EAPT+V D Q+YQQE +NQ+   Q
Sbjct: 146 GPSSSYMDVGPSTSYMHGHRHDY----GEHNEYLYHEAPTEVSDRQEYQQEPENQEELEQ 203

BLAST of PI0006853 vs. NCBI nr
Match: TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 242.3 bits (617), Expect = 3.1e-60
Identity = 132/202 (65.35%), Postives = 144/202 (71.29%), Query Frame = 0

Query: 2   RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNR 61
           RLYITR GA+VGHLRSNN RLRDVV+DPQQVLDICNNNERYMEKIH +Y++PIVPPPV+R
Sbjct: 303 RLYITRPGAIVGHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHR 362

Query: 62  GRVRVEEPELDEVYHNVE-------------------------------EVGIGYYDLGV 121
            R RVEE ELDEVYHNVE                               EV IGYYD  V
Sbjct: 363 ERFRVEEAELDEVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVV 422

Query: 122 SPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQ 173
            P SSYMDVGPSTSYM+GHG G+    GEHNEYLY+EAPTDV D Q+YQQE KNQ+   Q
Sbjct: 423 GPLSSYMDVGPSTSYMYGHGRGY----GEHNEYLYHEAPTDVSDRQEYQQEPKNQEDREQ 482

BLAST of PI0006853 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-58
Identity = 131/202 (64.85%), Postives = 142/202 (70.30%), Query Frame = 0

Query: 2   RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNR 61
           RLYITR GA VG  RSNN RLRDV DD QQ LDICNNNERYME+IH MY++PIVPPPV+R
Sbjct: 27  RLYITRPGAAVG--RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHR 86

Query: 62  GRVRVEEPELDEVYHNVE-------------------------------EVGIGYYDLGV 121
           G VRVEE ELD+VYHNVE                               EVGIGYYD GV
Sbjct: 87  GCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGV 146

Query: 122 SPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQ 173
            PSSSY+DV PSTSYMHGH  G+    GEHNEYLY+EAP DV D Q+YQQE +NQ+   Q
Sbjct: 147 GPSSSYVDVSPSTSYMHGHSRGY----GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQ 206

BLAST of PI0006853 vs. NCBI nr
Match: TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 4.8e-53
Identity = 120/188 (63.83%), Postives = 131/188 (69.68%), Query Frame = 0

Query: 16  RSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRVEEPELDEVY 75
           RSNN RLRDV DD QQ LDICNNNERYME+IH MY++PIVPPPV+RG VRVEE ELD+VY
Sbjct: 27  RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86

Query: 76  HNVE-------------------------------EVGIGYYDLGVSPSSSYMDVGPSTS 135
           HNVE                               EVGIGYYD GV PSSSY+DV PSTS
Sbjct: 87  HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146

Query: 136 YMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNR 173
           YMHGH  G+    GEHNEYLY+EAP DV D Q+YQQE +NQ+   Q RV SRRRQPTRNR
Sbjct: 147 YMHGHRRGY----GEHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPTRNR 206

BLAST of PI0006853 vs. NCBI nr
Match: TYK22189.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 4.8e-53
Identity = 119/174 (68.39%), Postives = 132/174 (75.86%), Query Frame = 0

Query: 7   RSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNRGRVRV 66
           RS   V  LRSNN RLRDV DDPQQVLDICNNNERYME+IH +Y++PIVPPP++RGRVRV
Sbjct: 24  RSEMFVTLLRSNNARLRDVADDPQQVLDICNNNERYMEEIHNIYDLPIVPPPIHRGRVRV 83

Query: 67  EEPELDEVYHNVEEV--------GIGYYDLGVSPSSSYMDVGPSTSYMHGHGHGHGRSCG 126
           EE ELDEVYH V+EV          GY   GV PSSSYMDV PSTSYMHGH  G+     
Sbjct: 84  EEAELDEVYHKVKEVHPMTQTQSQTGY---GVGPSSSYMDVDPSTSYMHGHERGY----E 143

Query: 127 EHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQPRVPSRRRQPTRNRRRPGCGTH 173
           EHNEYLY+EAP DV D Q+YQQE +NQ+   Q RV SRRRQP +NRRRPGCGTH
Sbjct: 144 EHNEYLYHEAPADVSDRQEYQQEPENQEDREQHRVQSRRRQPAQNRRRPGCGTH 190

BLAST of PI0006853 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 7.5e-46
Identity = 110/186 (59.14%), Postives = 127/186 (68.28%), Query Frame = 0

Query: 2   RLYITRSGAVVGHLRSNNKRLRDVVDDPQQVLDICNNNERYMEKIHYMYNVPIVPPPVNR 61
           RLYIT+ GA     RSNN RLRDV DD QQVLDICNNN+R+ME+IH MY++PIVPP ++R
Sbjct: 26  RLYITQLGAT----RSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHR 85

Query: 62  GRVRVEEPELDEVYHNVEEV----------------------GIG---------YYDLGV 121
           GRV+VEE ELDEVYHNVEE+                      G+G         YYD GV
Sbjct: 86  GRVQVEEAELDEVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGV 145

Query: 122 SPSSSYMDVGPSTSYMHGHGHGHGRSCGEHNEYLYYEAPTDVPDPQQYQQESKNQDAPGQ 157
            PSSSYMDVGPSTSYMHGH H +    GEHNEYLY+EAPT+V D Q+YQQE +NQ+   Q
Sbjct: 146 GPSSSYMDVGPSTSYMHGHRHDY----GEHNEYLYHEAPTEVSDRQEYQQEPENQEELEQ 203

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DJV71.5e-6065.35Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7V3426.4e-5964.85Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3BSG82.3e-5363.83GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3DFZ92.3e-5368.39GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7SLF83.6e-4659.14Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
TYK23842.13.1e-6065.35serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0062642.11.3e-5864.85mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
TYK01176.14.8e-5363.83GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
TYK22189.14.8e-5368.39GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0025972.17.5e-4659.14mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..149

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0006853.1PI0006853.1mRNA