PI0006642 (gene) Melon (PI 482460) v1

Overview


Name	PI0006642
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr04: 26614301 .. 26615201 (+)
RNA-Seq Expression	PI0006642
Synteny	PI0006642

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAACTTGAAGTTAAATTAGAATAAAAAATTTCTAAAAAATTGCTTTGGTTGCAAATAAGTAGAAGTGGGCAGCCTCAAGCTATAAATACGTATCTTCATGGGAGCTTTTTGCAAACACAAATTTCATCAAGAATTCAAATAATTAGAAATGGGCAAGGTTGTGGGTAACTCTGCCAAGATGGTTGCTTTGCTCTTTCTTTTCACCCTCATGCTCTCCATCAATGGTAATTAACACCACTATTATCAACCCTTTCCCCACTTCTATTTAATTCTTCATCTCAAACAAAAACTTTGGTGACAATAAAATTTTTGAATTATTGTTAAAAAACAAACCACATAAGAAAGTACTTAGAAAGAAACTTATAATTTCTATATGACATAATTTTTTTTTGTTCTTGTTTTCTTTTTCTCTTTTGTGACTCGCGGTGGCCACAGAAAAGCAAGGGACGGTGGAGGCAATGGTGTGTAAGCAGCGGAGCAAGACGTGGTCGGGATATTGCGCGATCACGAGCCATTGCAATCGACAATGCAAGAATTGGGAAGGTGCAGATCATGGAGCTTGCCACGATCACATTCCTGGAAAGGCTTGTTATTGCTACTACAACTGTTGAAAGCCATGCAATAATTCCTTATGAATTGATGATGATAATCTCCATCTCCATATCATTCCCCTTTTTTAAAAAATAAAAACTGTGTTTTCTTATGTGGTTCTGAAGGGATATCTATATAGTAATATTAGTTAGTTTTTAATTAATGTTTTTAAGTGTGAGAAGTCTATGTAGTTGGAAAATTTGTATTGTGGCTTTTGTGATAAATATGTTGTTATTTATCTCTTTAGAAGCTTGTTTGTGTGTCGATCTTCCTCTTCATATCAAAATAAAATGGGCTTGCTTGTTGTC

mRNA sequence

GAGAACTTGAAGTTAAATTAGAATAAAAAATTTCTAAAAAATTGCTTTGGTTGCAAATAAGTAGAAGTGGGCAGCCTCAAGCTATAAATACGTATCTTCATGGGAGCTTTTTGCAAACACAAATTTCATCAAGAATTCAAATAATTAGAAATGGGCAAGGTTGTGGGTAACTCTGCCAAGATGGTTGCTTTGCTCTTTCTTTTCACCCTCATGCTCTCCATCAATGAAAAGCAAGGGACGGTGGAGGCAATGGTGTGTAAGCAGCGGAGCAAGACGTGGTCGGGATATTGCGCGATCACGAGCCATTGCAATCGACAATGCAAGAATTGGGAAGGTGCAGATCATGGAGCTTGCCACGATCACATTCCTGGAAAGGCTTGTTATTGCTACTACAACTGTTGAAAGCCATGCAATAATTCCTTATGAATTGATGATGATAATCTCCATCTCCATATCATTCCCCTTTTTTAAAAAATAAAAACTGTGTTTTCTTATGTGGTTCTGAAGGGATATCTATATAGTAATATTAGTTAGTTTTTAATTAATGTTTTTAAGTGTGAGAAGTCTATGTAGTTGGAAAATTTGTATTGTGGCTTTTGTGATAAATATGTTGTTATTTATCTCTTTAGAAGCTTGTTTGTGTGTCGATCTTCCTCTTCATATCAAAATAAAATGGGCTTGCTTGTTGTC

Coding sequence (CDS)

ATGAAAAGCAAGGGACGGTGGAGGCAATGGTGTGTAAGCAGCGGAGCAAGACGTGGTCGGGATATTGCGCGATCACGAGCCATTGCAATCGACAATGCAAGAATTGGGAAGGTGCAGATCATGGAGCTTGCCACGATCACATTCCTGGAAAGGCTTGTTATTGCTACTACAACTGTTGAAAGCCATGCAATAATTCCTTATGAATTGATGATGATAATCTCCATCTCCATATCATTCCCCTTTTTTAAAAAATAA

Protein sequence

MKSKGRWRQWCVSSGARRGRDIARSRAIAIDNARIGKVQIMELATITFLERLVIATTTVESHAIIPYELMMIISISISFPFFKK

Homology

[Close]

BLAST of PI0006642 vs. ExPASy TrEMBL
Match: A0A0A0LDM9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851930 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.5e-21
Identity = 58/68 (85.29%), Postives = 63/68 (92.65%), Query Frame = 0


Query: 1  MKSKGRWRQWCVSSGARRGRDIARSRAIAIDNARIGKVQIMELATITFLERLVIATTTVE 60
          MK +G WRQ CV SGARRGRDIARSRAIA +NARIGKVQIMELATITFLE+LVIATTTVE
Sbjct: 1  MKREGVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLEKLVIATTTVE 60

Query: 61 SHAIIPYE 69
          +HAIIP+E
Sbjct: 61 NHAIIPHE 68

[Close]

BLAST of PI0006642 vs. NCBI nr
Match: KAE8651310.1 (hypothetical protein Csa_023517, partial [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 5.9e-20
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 2  KSKGRWRQWCVSSGARRGRDIARSRAIAIDNARIGKVQIMELATITFLERLVIATTTVES 61
          K +G WRQ CV SGARRGRDIARSRAIA +NARIGKVQIMELATITFLE+LVIATTTVE+
Sbjct: 1  KREGVWRQCCVRSGARRGRDIARSRAIATNNARIGKVQIMELATITFLEKLVIATTTVEN 60

Query: 62 HAIIPYE 69
          HAIIP+E
Sbjct: 61 HAIIPHE 67

[Close]

BLAST of PI0006642 vs. NCBI nr
Match: KAG6591982.1 (hypothetical protein SDJN03_14328, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.9 bits (154), Expect = 7.4e-07
Identity = 44/77 (57.14%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 3   SKGRWRQWCVSSGARRGRDIARSRAIAIDNARIGKVQIMELATITFLERLVIATTTVESH 62
           S G WRQ C   GARRG+  A +RAIAIDNARIGKV   ELA   FLE LV AT+TVE  
Sbjct: 45  SSGWWRQRCARGGARRGQGGAGTRAIAIDNARIGKVPNKELAMPNFLEGLVFATSTVED- 104

Query: 63  AIIPYELMMIISISISF 80
                  +MII IS  F
Sbjct: 105 -------LMIIFISSPF 113

The following BLAST results are available for this feature:

BLAST of PI0006642 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006642 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDM9	7.5e-21	85.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851930 PE=4 SV=1	[more]

BLAST of PI0006642 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651310.1	5.9e-20	85.07	hypothetical protein Csa_023517, partial [Cucumis sativus]	[more]
KAG6591982.1	7.4e-07	57.14	hypothetical protein SDJN03_14328, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of PI0006642 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006642.1	PI0006642.1	mRNA