PI0006546 (gene) Melon (PI 482460) v1

Overview


Name	PI0006546
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr01: 8218007 .. 8218171 (-)
RNA-Seq Expression	PI0006546
Synteny	PI0006546

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAGCGTTGATGTGACAGAGGACTACGACAAAGGTGATTCGACACACGCAACAACTGCAGGTGACGACATTCACTACATCGAAACGTCCAATGAATGGAGTCATTGGAGGGATGATCTGGTCGAAGAGATGTTCAGTGAATGGGAGTTACGTGATCAGTAG

mRNA sequence

ATGACGAGCGTTGATGTGACAGAGGACTACGACAAAGGTGATTCGACACACGCAACAACTGCAGGTGACGACATTCACTACATCGAAACGTCCAATGAATGGAGTCATTGGAGGGATGATCTGGTCGAAGAGATGTTCAGTGAATGGGAGTTACGTGATCAGTAG

Coding sequence (CDS)

ATGACGAGCGTTGATGTGACAGAGGACTACGACAAAGGTGATTCGACACACGCAACAACTGCAGGTGACGACATTCACTACATCGAAACGTCCAATGAATGGAGTCATTGGAGGGATGATCTGGTCGAAGAGATGTTCAGTGAATGGGAGTTACGTGATCAGTAG

Protein sequence

MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ

Homology

[Close]

BLAST of PI0006546 vs. ExPASy TrEMBL
Match: A0A5D3D9Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00220 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ 55
           MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Sbjct: 313 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 366

[Close]

BLAST of PI0006546 vs. ExPASy TrEMBL
Match: A0A5A7TWH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001380 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ 55
           MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]

BLAST of PI0006546 vs. ExPASy TrEMBL
Match: A0A5A7UGH9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00700 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ 55
           MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Sbjct: 218 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 271

[Close]

BLAST of PI0006546 vs. ExPASy TrEMBL
Match: A0A5A7VHB0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00240 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ 55
           MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]

BLAST of PI0006546 vs. ExPASy TrEMBL
Match: A0A5A7VG29 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3818G00010 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ 55
           MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]

BLAST of PI0006546 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ 55
           MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Sbjct: 335 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 388

[Close]

BLAST of PI0006546 vs. NCBI nr
Match: KAA0048281.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ 55
           MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Sbjct: 269 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 322

[Close]

BLAST of PI0006546 vs. NCBI nr
Match: KAA0068124.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ 55
           MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Sbjct: 290 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 343

[Close]

BLAST of PI0006546 vs. NCBI nr
Match: KAA0054148.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ 55
           MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Sbjct: 218 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 271

[Close]

BLAST of PI0006546 vs. NCBI nr
Match: KAA0054554.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20397.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MTSVDVTEDYDKGDSTHATTAGDDIHYIETSNEWSHWRDDLVEEMFSEWELRDQ 55
           MT+ D+ ++ D+ DSTHATTA DDIHYIETSNEWS WRDDL EEMF+EWELR+Q
Sbjct: 313 MTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFTEWELRNQ 366

The following BLAST results are available for this feature:

BLAST of PI0006546 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006546 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D9Z3	1.1e-14	74.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TWH8	1.1e-14	74.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UGH9	1.1e-14	74.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VHB0	1.1e-14	74.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VG29	1.1e-14	74.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0006546 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065286.1	2.4e-14	74.07	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048281.1	2.4e-14	74.07	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0068124.1	2.4e-14	74.07	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054148.1	2.4e-14	74.07	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054554.1	2.4e-14	74.07	retrotransposon protein [Cucumis melo var. makuwa] >TYK20397.1 retrotransposon p...	[more]

BLAST of PI0006546 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006546.1	PI0006546.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding