PI0006433 (gene) Melon (PI 482460) v1

Overview


Name	PI0006433
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr08: 8478091 .. 8479467 (+)
RNA-Seq Expression	PI0006433
Synteny	PI0006433

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCGTTGCCGGGGAGCTTCGGTAAGTAAAATCTTGAAACCTTTTTTTTTGGGTTTAAAAATTCTTTTCTTAGTTTCTTGATTCTATATTCAATTTCTAAAAAAAAAAATCTTTAAAACCAAAAAAGAGAAAGTTAGATTTTGATTCTTTTTCTCTCCCTTACTTTGTATGTCCCGCTCTTCCAATCCTCACTTAGAATTTTTTGAAGACCTTAATAGGGAAGTGCGTAGAATTAGGAGAGAAAGGAGAGAAGAAATTAATCAATCAATTCCTCAAGTACCCTTAGAAAACCAAGAGCCAAATTTAGAAAACCTTGAAAGACAAAATATGGGCCAAGTTAGAGAAAAGACCCTTAGAGAACTCTCTGAGCCAGATGAAGACCAAAGACCCCTGTGTATAGTCATTCCCCCAACCACTCAACCCTTCGAGCTAAAACCTGGACTAATCCATCTTTTACCAATCTATAAGGGTAGCTCAGGGGAAGATCCTCATAAACACCTTAAGGATTTCCATATGGTTTGTGACTCTATGAGACCCCACGGAGTCTCTGAAGAACAGCTTAATCTTAGAGCCTTTCCATTTTCCTTAACCGATACAGCCAAGCGTTGGCTTTACTATTTAGAACCAGGATCTATCACAACTTGGGGAGGACTTAAAAAGAAATTCTTAGAGAAATTCTTTCCCGCTTCTAGAGCAAACAACATAAGGAAGGAAATCTATGGAATTAGACAAGCCTTTGGGGAGTCTTTATCTGAATATTGGGAGCGCTTTAAGGAACTTTGCGCTAGCTTTCCCCACCATCATATTTCCGACCCCTCTTTAATACAGTATTTTTATTCTGGACTACTAACCACGGATAGAAATACAGGACGCTGCAGCAGGTGGTGCCCTGGCCGATAAAACCCCTACTGAAGCAAGAGAGCTAATCTCACGGATGGCTGAAAATTCACAGAATTTTGGCAATAGAGCATCCGAGCTCGACAATTCATTGACGAAAGAGGTTAGTGAGCTTAAATCACAAATGTTAAATATGACTCAATTGCTTACTTCTTTTGTTCAAGGCGGAAATGTAAAAGTTGCCAAATGTGGAGTTTGCGGATTAATAGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCAAGGAAATACTTACAATGCCGGTTGGAGAGATAATCCCAACCTTAGATGGGGAAACAACAATCAACAACCACAAGCAACTTTTTCCTCAAATAATCAAGGTACAAATTTAGAAGACTTAGTTAAAGCTCTTGCTACTAATACAATTTCTTTTAGAATGAAATGAAACAACAGATGTCTCAATTAACCAATGCAATAAGTAA

mRNA sequence

ATGGCGCCGTTGCCGGGGAGCTTCGGCGGAAATGTAAAAGTTGCCAAATGTGGAGTTTGCGGATTAATAGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCAAGGAAATACTTACAATGCCGGTTGGAGAGATAATCCCAACCTTAGATGGGGAAACAACAATCAACAACCACAAGCAACTTTTTCCTCAAATAATCAAGATGTCTCAATTAACCAATGCAATAAGTAA

Coding sequence (CDS)

ATGGCGCCGTTGCCGGGGAGCTTCGGCGGAAATGTAAAAGTTGCCAAATGTGGAGTTTGCGGATTAATAGGACATCCTAATGACAAGTGCCCTGACCTAGTGGAAGAGGCAAATGTCATTAGGAAGTATGATCCTCAAGGAAATACTTACAATGCCGGTTGGAGAGATAATCCCAACCTTAGATGGGGAAACAACAATCAACAACCACAAGCAACTTTTTCCTCAAATAATCAAGATGTCTCAATTAACCAATGCAATAAGTAA

Protein sequence

MAPLPGSFGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPQATFSSNNQDVSINQCNK

Homology

[Close]

BLAST of PI0006433 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.8e-23
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 152 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 211

Query: 69  -PQATFSSNNQDVSINQCNK 88
             QA  +S+NQ  ++    K
Sbjct: 212 HTQAPSTSSNQGTNLEDIIK 231

[Close]

BLAST of PI0006433 vs. ExPASy TrEMBL
Match: A0A5D3D815 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00050 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 50/80 (62.50%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 67  GTPLKVTKCGVCGLVGHPNDKCPEVIEDINIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 126

Query: 69  P-QATFSSNNQDVSINQCNK 88
             QA  +S+NQ +++    K
Sbjct: 127 HIQAPPTSSNQGMNLEDIIK 146

[Close]

BLAST of PI0006433 vs. ExPASy TrEMBL
Match: A0A5D3DCG3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold860G00100 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.4e-22
Identity = 49/80 (61.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 9  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
          G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 11 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69 -PQATFSSNNQDVSINQCNK 88
            QA  +S+NQ  ++    K
Sbjct: 71 HTQAPPTSSNQGTNLEDIIK 90

[Close]

BLAST of PI0006433 vs. ExPASy TrEMBL
Match: A0A5A7SVA1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00430 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.4e-22
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP ++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 67  GTPLKVTKCGVCGLVGHPNDKCPKVIEDINIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 126

Query: 69  P-QATFSSNNQDVSINQCNK 88
             QA  +S+NQ +++    K
Sbjct: 127 HIQAPPTSSNQGMNLEDIIK 146

[Close]

BLAST of PI0006433 vs. ExPASy TrEMBL
Match: A0A1S4E3R2 (uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.4e-22
Identity = 49/80 (61.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 9  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
          G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 11 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69 -PQATFSSNNQDVSINQCNK 88
            QA  +S+NQ  ++    K
Sbjct: 71 HTQAPPTSSNQGTNLEDIIK 90

[Close]

BLAST of PI0006433 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.0e-22
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 152 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 211

Query: 69  -PQATFSSNNQDVSINQCNK 88
             QA  +S+NQ  ++    K
Sbjct: 212 HTQAPSTSSNQGTNLEDIIK 231

[Close]

BLAST of PI0006433 vs. NCBI nr
Match: TYK19600.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.2e-22
Identity = 50/80 (62.50%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 67  GTPLKVTKCGVCGLVGHPNDKCPEVIEDINIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 126

Query: 69  P-QATFSSNNQDVSINQCNK 88
             QA  +S+NQ +++    K
Sbjct: 127 HIQAPPTSSNQGMNLEDIIK 146

[Close]

BLAST of PI0006433 vs. NCBI nr
Match: XP_016902871.1 (PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 5.0e-22
Identity = 49/80 (61.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 9  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
          G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 11 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69 -PQATFSSNNQDVSINQCNK 88
            QA  +S+NQ  ++    K
Sbjct: 71 HTQAPPTSSNQGTNLEDIIK 90

[Close]

BLAST of PI0006433 vs. NCBI nr
Match: KAA0051761.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 5.0e-22
Identity = 49/80 (61.25%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 9  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
          G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 11 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQK 70

Query: 69 -PQATFSSNNQDVSINQCNK 88
            QA  +S+NQ  ++    K
Sbjct: 71 HTQAPPTSSNQGTNLEDIIK 90

[Close]

BLAST of PI0006433 vs. NCBI nr
Match: KAA0033247.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 5.0e-22
Identity = 50/80 (62.50%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ 68
           G  +KV KCGVCGL+GHPNDKCP ++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+
Sbjct: 67  GTPLKVTKCGVCGLVGHPNDKCPKVIEDINIVRKYDPHGNTYNSGWRDNPNLRWGNDNQK 126

Query: 69  P-QATFSSNNQDVSINQCNK 88
             QA  +S+NQ +++    K
Sbjct: 127 HIQAPPTSSNQGMNLEDIIK 146

The following BLAST results are available for this feature:

BLAST of PI0006433 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006433 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CRR8	4.8e-23	62.50	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3D815	1.1e-22	62.50	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3DCG3	2.4e-22	61.25	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7SVA1	2.4e-22	62.50	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A1S4E3R2	2.4e-22	61.25	uncharacterized protein LOC107991910 OS=Cucumis melo OX=3656 GN=LOC107991910 PE=...	[more]

BLAST of PI0006433 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047407.1	1.0e-22	62.50	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
TYK19600.1	2.2e-22	62.50	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
XP_016902871.1	5.0e-22	61.25	PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]	[more]
KAA0051761.1	5.0e-22	61.25	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK21361.1 retrotranspos...	[more]
KAA0033247.1	5.0e-22	62.50	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0006433 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006433.1	PI0006433.1	mRNA