Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACTGTCCATTCAAATCCGACACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAACACCAATCTGTTAGAGAACATGTTCTAGGCATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGTGGTCATTGACGAGCAAAGTCAGGTATCCTTTACCTTAGAATCTCTTTTGAAGAGCTTCCTTCAATTCCGTAGCAATGTGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCTAG
mRNA sequence
ATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACTGTCCATTCAAATCCGACACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAACACCAATCTGTTAGAGAACATGTTCTAGGCATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGTGGTCATTGACGAGCAAAGTCAGGTATCCTTTACCTTAGAATCTCTTTTGAAGAGCTTCCTTCAATTCCGTAGCAATGTGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCTAG
Coding sequence (CDS)
ATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACTGTCCATTCAAATCCGACACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGAACACCAATCTGTTAGAGAACATGTTCTAGGCATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGTGGTCATTGACGAGCAAAGTCAGGTATCCTTTACCTTAGAATCTCTTTTGAAGAGCTTCCTTCAATTCCGTAGCAATGTGGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCTAG
Protein sequence
MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMMVQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKI
Homology
BLAST of PI0006190 vs. ExPASy TrEMBL
Match:
A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)
HSP 1 Score: 215.3 bits (547), Expect = 1.8e-52
Identity = 121/158 (76.58%), Postives = 137/158 (86.71%), Query Frame = 0
Query: 1 MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMM 60
+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E SVREHVL MM
Sbjct: 77 LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136
Query: 61 VQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMNKIEYTMTTLLNELQTFQSLM 120
V FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMNKI YT+TTLLNELQTF+SLM
Sbjct: 137 VHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLM 196
Query: 121 KNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK 158
K KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Sbjct: 197 KIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233
BLAST of PI0006190 vs. ExPASy TrEMBL
Match:
A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)
HSP 1 Score: 215.3 bits (547), Expect = 1.8e-52
Identity = 121/158 (76.58%), Postives = 137/158 (86.71%), Query Frame = 0
Query: 1 MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMM 60
+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E SVREHVL MM
Sbjct: 77 LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136
Query: 61 VQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMNKIEYTMTTLLNELQTFQSLM 120
V FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMNKI YT+TTLLNELQTF+SLM
Sbjct: 137 VHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLM 196
Query: 121 KNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK 158
K KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Sbjct: 197 KIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233
BLAST of PI0006190 vs. ExPASy TrEMBL
Match:
A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)
HSP 1 Score: 215.3 bits (547), Expect = 1.8e-52
Identity = 121/158 (76.58%), Postives = 137/158 (86.71%), Query Frame = 0
Query: 1 MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMM 60
+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E SVREHVL MM
Sbjct: 194 LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 253
Query: 61 VQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMNKIEYTMTTLLNELQTFQSLM 120
V FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMNKI YT+TTLLNELQTF+SLM
Sbjct: 254 VHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLM 313
Query: 121 KNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK 158
K KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Sbjct: 314 KIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKK 350
BLAST of PI0006190 vs. ExPASy TrEMBL
Match:
A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)
HSP 1 Score: 215.3 bits (547), Expect = 1.8e-52
Identity = 121/158 (76.58%), Postives = 137/158 (86.71%), Query Frame = 0
Query: 1 MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMM 60
+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E SVREHVL MM
Sbjct: 77 LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136
Query: 61 VQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMNKIEYTMTTLLNELQTFQSLM 120
V FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMNKI YT+TTLLNELQTF+SLM
Sbjct: 137 VHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLM 196
Query: 121 KNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK 158
K KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Sbjct: 197 KIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233
BLAST of PI0006190 vs. ExPASy TrEMBL
Match:
A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)
HSP 1 Score: 215.3 bits (547), Expect = 1.8e-52
Identity = 121/158 (76.58%), Postives = 137/158 (86.71%), Query Frame = 0
Query: 1 MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMM 60
+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E SVREHVL MM
Sbjct: 77 LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136
Query: 61 VQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMNKIEYTMTTLLNELQTFQSLM 120
V FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMNKI YT+TTLLNELQTF+SLM
Sbjct: 137 VHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLM 196
Query: 121 KNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK 158
K KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Sbjct: 197 KIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233
BLAST of PI0006190 vs. NCBI nr
Match:
KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 215.3 bits (547), Expect = 3.8e-52
Identity = 121/158 (76.58%), Postives = 137/158 (86.71%), Query Frame = 0
Query: 1 MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMM 60
+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E SVREHVL MM
Sbjct: 77 LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136
Query: 61 VQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMNKIEYTMTTLLNELQTFQSLM 120
V FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMNKI YT+TTLLNELQTF+SLM
Sbjct: 137 VHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLM 196
Query: 121 KNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK 158
K KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Sbjct: 197 KIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233
BLAST of PI0006190 vs. NCBI nr
Match:
KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 215.3 bits (547), Expect = 3.8e-52
Identity = 121/158 (76.58%), Postives = 137/158 (86.71%), Query Frame = 0
Query: 1 MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMM 60
+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E SVREHVL MM
Sbjct: 76 LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 135
Query: 61 VQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMNKIEYTMTTLLNELQTFQSLM 120
V FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMNKI YT+TTLLNELQTF+SLM
Sbjct: 136 VHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLM 195
Query: 121 KNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK 158
K KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Sbjct: 196 KIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKK 232
BLAST of PI0006190 vs. NCBI nr
Match:
TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 215.3 bits (547), Expect = 3.8e-52
Identity = 121/158 (76.58%), Postives = 137/158 (86.71%), Query Frame = 0
Query: 1 MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMM 60
+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E SVREHVL MM
Sbjct: 77 LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136
Query: 61 VQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMNKIEYTMTTLLNELQTFQSLM 120
V FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMNKI YT+TTLLNELQTF+SLM
Sbjct: 137 VHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLM 196
Query: 121 KNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK 158
K KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Sbjct: 197 KIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233
BLAST of PI0006190 vs. NCBI nr
Match:
KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 215.3 bits (547), Expect = 3.8e-52
Identity = 121/158 (76.58%), Postives = 137/158 (86.71%), Query Frame = 0
Query: 1 MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMM 60
+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E SVREHVL MM
Sbjct: 77 LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136
Query: 61 VQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMNKIEYTMTTLLNELQTFQSLM 120
V FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMNKI YT+TTLLNELQTF+SLM
Sbjct: 137 VHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLM 196
Query: 121 KNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK 158
K KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Sbjct: 197 KIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233
BLAST of PI0006190 vs. NCBI nr
Match:
KAA0051952.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 215.3 bits (547), Expect = 3.8e-52
Identity = 121/158 (76.58%), Postives = 137/158 (86.71%), Query Frame = 0
Query: 1 MSDVLSKKHESMVTARQIMDSLQEMFGQLSIQIRHEAIKYVYNARMKEHQSVREHVLGMM 60
+S+VL+KKHESM+TAR+IMDSLQEMFGQ S QI+H+A+KY+YNARM E SVREHVL MM
Sbjct: 77 LSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMM 136
Query: 61 VQFNVAETNGVVIDEQSQVSFTLESLLKSFLQFRSNVVMNKIEYTMTTLLNELQTFQSLM 120
V FNVAE NG VIDE SQVSF LESL +SFLQFRSN VMNKI YT+TTLLNELQTF+SLM
Sbjct: 137 VHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLM 196
Query: 121 KNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKK 158
K KGQK GEANVA S ++F +GS+SGTKS PSSSG KK
Sbjct: 197 KIKGQK-GEANVATSTRKFHRGSTSGTKSMPSSSGNKK 233
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SMH8 | 1.8e-52 | 76.58 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... | [more] |
| A0A5D3CPJ6 | 1.8e-52 | 76.58 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... | [more] |
| A0A5A7V4M1 | 1.8e-52 | 76.58 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093... | [more] |
| A0A5A7TU93 | 1.8e-52 | 76.58 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259... | [more] |
| A0A5A7TWB9 | 1.8e-52 | 76.58 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
