PI0006075 (gene) Melon (PI 482460) v1

Overview
NamePI0006075
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr02: 6004983 .. 6005525 (+)
RNA-Seq ExpressionPI0006075
SyntenyPI0006075
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACACTATGTTTTCATTTGTACTACCGTTCCCGAATATAGTTCATTTGTACGTGAATGTGAGTAGGAAAGATCTGGGCATAAACATAAATGCACAACCACAACCATTTAGCGAGTACAAAGACAAAATGCAATATGTTGATGCTAACCCAGAATCAGTTGACTTGCCAGTTTACGATGATGATGAAATGATTGCGAACAATGATTACAAAGATTTTAGAACAGAGACTAATAATGAATTTGAAGAGATGGACTTCGATGATCGCAAACATGAACTTCCATCTACCACATTCATTGAGTTAGACATAGATGTGGTAGATAGCATTCGGGAACATGATCTAATTATAGTCCCAGTGGTTACCGACAACACGAAATTGTATAAGGGAATGATTTGTGAAGACAAAGAAATGCTACAATATATGCTAAAGTGTTTTGATATTAAGAGTCACGCACCATATGAAGTAGTAGAATCTACACTGACAATTTGGGTTGTTCGATGCAAGAAGTGGAAAGAGGATTATGGATGGAGACGTCGTGCATAA

mRNA sequence

ATGAACACTATGTTTTCATTTGTACTACCGTTCCCGAATATAGTTCATTTGTACGTGAATGTGAGTAGGAAAGATCTGGGCATAAACATAAATGCACAACCACAACCATTTAGCGAGTACAAAGACAAAATGCAATATGTTGATGCTAACCCAGAATCAGTTGACTTGCCAGTTTACGATGATGATGAAATGATTGCGAACAATGATTACAAAGATTTTAGAACAGAGACTAATAATGAATTTGAAGAGATGGACTTCGATGATCGCAAACATGAACTTCCATCTACCACATTCATTGAGTTAGACATAGATGTGGTAGATAGCATTCGGGAACATGATCTAATTATAGTCCCAGTGGTTACCGACAACACGAAATTGTATAAGGGAATGATTTGTGAAGACAAAGAAATGCTACAATATATGCTAAAGTGTTTTGATATTAAGAGTCACGCACCATATGAAGTAGTAGAATCTACACTGACAATTTGGGTTGTTCGATGCAAGAAGTGGAAAGAGGATTATGGATGGAGACGTCGTGCATAA

Coding sequence (CDS)

ATGAACACTATGTTTTCATTTGTACTACCGTTCCCGAATATAGTTCATTTGTACGTGAATGTGAGTAGGAAAGATCTGGGCATAAACATAAATGCACAACCACAACCATTTAGCGAGTACAAAGACAAAATGCAATATGTTGATGCTAACCCAGAATCAGTTGACTTGCCAGTTTACGATGATGATGAAATGATTGCGAACAATGATTACAAAGATTTTAGAACAGAGACTAATAATGAATTTGAAGAGATGGACTTCGATGATCGCAAACATGAACTTCCATCTACCACATTCATTGAGTTAGACATAGATGTGGTAGATAGCATTCGGGAACATGATCTAATTATAGTCCCAGTGGTTACCGACAACACGAAATTGTATAAGGGAATGATTTGTGAAGACAAAGAAATGCTACAATATATGCTAAAGTGTTTTGATATTAAGAGTCACGCACCATATGAAGTAGTAGAATCTACACTGACAATTTGGGTTGTTCGATGCAAGAAGTGGAAAGAGGATTATGGATGGAGACGTCGTGCATAA

Protein sequence

MNTMFSFVLPFPNIVHLYVNVSRKDLGININAQPQPFSEYKDKMQYVDANPESVDLPVYDDDEMIANNDYKDFRTETNNEFEEMDFDDRKHELPSTTFIELDIDVVDSIREHDLIIVPVVTDNTKLYKGMICEDKEMLQYMLKCFDIKSHAPYEVVESTLTIWVVRCKKWKEDYGWRRRA
Homology
BLAST of PI0006075 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 2.0e-55
Identity = 113/180 (62.78%), Postives = 138/180 (76.67%), Query Frame = 0

Query: 1   MNTMFSFVLPFPNIVHLYVNVSRKDLGININAQPQPFSEYKDKMQYVDANPESVDLPVYD 60
           MNTMFS  LPFPN+VHLYV VS  D  IN+N +P+   E      YVD  PES   PV  
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEE------YVDVEPESDAPPVCH 102

Query: 61  DDEMIANNDYKDFRTETNNEFEEMDFDDRKHELPSTTFIELDIDVVDSIREHDLIIVPVV 120
           ++EM+A N+Y +FRTET++EFEEMDFD  ++E+PS TF +LD++ VD+I+EHD IIVP+V
Sbjct: 103 EEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMV 162

Query: 121 TDNTKLYKGMICEDKEMLQYMLKCFDIKSHAPYEVVESTLTIWVVRCKKWKEDYGWRRRA 180
           TDNTKLY GMICE+KEM+Q+M+KCF IKSHAPYEVVEST T WV+RCKK  E   WR RA
Sbjct: 163 TDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRA 216

BLAST of PI0006075 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 7.6e-55
Identity = 113/180 (62.78%), Postives = 137/180 (76.11%), Query Frame = 0

Query: 1   MNTMFSFVLPFPNIVHLYVNVSRKDLGININAQPQPFSEYKDKMQYVDANPESVDLPVYD 60
           MNTMFS  LPFPN+VHLYV VS  D  IN+N +P+   E      YVD  PES   PV  
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEE------YVDVEPESDAPPVCH 102

Query: 61  DDEMIANNDYKDFRTETNNEFEEMDFDDRKHELPSTTFIELDIDVVDSIREHDLIIVPVV 120
           ++EM+A N+Y +FRTET++EFEEMDFD  ++E+PS TF +LD++ VD I+EHD IIVP+V
Sbjct: 103 EEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMV 162

Query: 121 TDNTKLYKGMICEDKEMLQYMLKCFDIKSHAPYEVVESTLTIWVVRCKKWKEDYGWRRRA 180
           TDNTKLY GMICE+K+MLQ+M+KCF IKSHAPYEVVEST T WV+RCKK  E   WR RA
Sbjct: 163 TDNTKLYTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRA 216

BLAST of PI0006075 vs. ExPASy TrEMBL
Match: A0A5D3DIM2 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00560 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 8.4e-54
Identity = 112/180 (62.22%), Postives = 135/180 (75.00%), Query Frame = 0

Query: 1   MNTMFSFVLPFPNIVHLYVNVSRKDLGININAQPQPFSEYKDKMQYVDANPESVDLPVYD 60
           MNTMFS  LPF N+VHLYV VS  D  IN+N +P+   E      YVD  PES   PV  
Sbjct: 43  MNTMFSITLPFLNMVHLYVTVSMVDTAINLNVEPRYVEE------YVDVEPESNAPPVCH 102

Query: 61  DDEMIANNDYKDFRTETNNEFEEMDFDDRKHELPSTTFIELDIDVVDSIREHDLIIVPVV 120
           ++EM+A N+Y +FRTET++EFEEMDFD  ++E+PS  F +LD++ VD I+EHD IIVP+V
Sbjct: 103 EEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNKFTDLDMNAVDGIQEHDPIIVPMV 162

Query: 121 TDNTKLYKGMICEDKEMLQYMLKCFDIKSHAPYEVVESTLTIWVVRCKKWKEDYGWRRRA 180
           TDNTKLY GMICE+KEMLQ+M+KCF IKSHAPYEVVEST T WV+RCKK  E   WR RA
Sbjct: 163 TDNTKLYTGMICENKEMLQHMIKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRA 216

BLAST of PI0006075 vs. ExPASy TrEMBL
Match: A0A5A7T1X8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00510 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 9.3e-53
Identity = 111/180 (61.67%), Postives = 135/180 (75.00%), Query Frame = 0

Query: 1   MNTMFSFVLPFPNIVHLYVNVSRKDLGININAQPQPFSEYKDKMQYVDANPESVDLPVYD 60
           MNTMFS  L FPN+VHLYV VS  D  IN+N +P+   E      YVD  PES    V  
Sbjct: 43  MNTMFSIALSFPNMVHLYVTVSMVDTAINLNVEPRYVEE------YVDVEPESDAPLVCH 102

Query: 61  DDEMIANNDYKDFRTETNNEFEEMDFDDRKHELPSTTFIELDIDVVDSIREHDLIIVPVV 120
           ++EM+A N+Y +FRTET++EFEEMDFD  ++E+PS TF +LD++ VD I+EHD IIVP+V
Sbjct: 103 EEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMV 162

Query: 121 TDNTKLYKGMICEDKEMLQYMLKCFDIKSHAPYEVVESTLTIWVVRCKKWKEDYGWRRRA 180
           TDNTKLY GMICE+K+MLQ+M+KCF IKSHAPYEVVEST T WV+RCKK  E   WR RA
Sbjct: 163 TDNTKLYTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRA 216

BLAST of PI0006075 vs. ExPASy TrEMBL
Match: A0A5D3DHR2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001060 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.6e-52
Identity = 109/173 (63.01%), Postives = 134/173 (77.46%), Query Frame = 0

Query: 1   MNTMFSFVLPFPNIVHLYVNVSRKDLGININAQPQPFSEYKDKMQYVDANPESVDLPVYD 60
           MNTMFS  LPFPN+VHLYV VS  DL IN+N +P+   E      YVD + ES   PV  
Sbjct: 1   MNTMFSIALPFPNMVHLYVTVSMVDLAINLNVEPKYVEE------YVDVDQESDAPPVCH 60

Query: 61  DDEMIANNDYKDFRTETNNEFEEMDFDDRKHELPSTTFIELDIDVVDSIREHDLIIVPVV 120
           ++EM+A N+Y +FRTET++EFEEMDFD  ++E+PS TF +LD++ VD I+E D IIVP+V
Sbjct: 61  EEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDIQEQDPIIVPMV 120

Query: 121 TDNTKLYKGMICEDKEMLQYMLKCFDIKSHAPYEVVESTLTIWVVRCKKWKED 174
           TDNTKLY  MICE+KEMLQ+M+KCF IKSHAPYEVVESTLT WV++CKK  ED
Sbjct: 121 TDNTKLYTRMICENKEMLQHMVKCFAIKSHAPYEVVESTLTKWVIQCKKSNED 167

BLAST of PI0006075 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 225.3 bits (573), Expect = 4.1e-55
Identity = 113/180 (62.78%), Postives = 138/180 (76.67%), Query Frame = 0

Query: 1   MNTMFSFVLPFPNIVHLYVNVSRKDLGININAQPQPFSEYKDKMQYVDANPESVDLPVYD 60
           MNTMFS  LPFPN+VHLYV VS  D  IN+N +P+   E      YVD  PES   PV  
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEE------YVDVEPESDAPPVCH 102

Query: 61  DDEMIANNDYKDFRTETNNEFEEMDFDDRKHELPSTTFIELDIDVVDSIREHDLIIVPVV 120
           ++EM+A N+Y +FRTET++EFEEMDFD  ++E+PS TF +LD++ VD+I+EHD IIVP+V
Sbjct: 103 EEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMV 162

Query: 121 TDNTKLYKGMICEDKEMLQYMLKCFDIKSHAPYEVVESTLTIWVVRCKKWKEDYGWRRRA 180
           TDNTKLY GMICE+KEM+Q+M+KCF IKSHAPYEVVEST T WV+RCKK  E   WR RA
Sbjct: 163 TDNTKLYTGMICENKEMMQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRA 216

BLAST of PI0006075 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.4 bits (568), Expect = 1.6e-54
Identity = 113/180 (62.78%), Postives = 137/180 (76.11%), Query Frame = 0

Query: 1   MNTMFSFVLPFPNIVHLYVNVSRKDLGININAQPQPFSEYKDKMQYVDANPESVDLPVYD 60
           MNTMFS  LPFPN+VHLYV VS  D  IN+N +P+   E      YVD  PES   PV  
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINLNVEPRYVEE------YVDVEPESDAPPVCH 102

Query: 61  DDEMIANNDYKDFRTETNNEFEEMDFDDRKHELPSTTFIELDIDVVDSIREHDLIIVPVV 120
           ++EM+A N+Y +FRTET++EFEEMDFD  ++E+PS TF +LD++ VD I+EHD IIVP+V
Sbjct: 103 EEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMV 162

Query: 121 TDNTKLYKGMICEDKEMLQYMLKCFDIKSHAPYEVVESTLTIWVVRCKKWKEDYGWRRRA 180
           TDNTKLY GMICE+K+MLQ+M+KCF IKSHAPYEVVEST T WV+RCKK  E   WR RA
Sbjct: 163 TDNTKLYTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRA 216

BLAST of PI0006075 vs. NCBI nr
Match: KAA0040476.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK23484.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-53
Identity = 112/180 (62.22%), Postives = 135/180 (75.00%), Query Frame = 0

Query: 1   MNTMFSFVLPFPNIVHLYVNVSRKDLGININAQPQPFSEYKDKMQYVDANPESVDLPVYD 60
           MNTMFS  LPF N+VHLYV VS  D  IN+N +P+   E      YVD  PES   PV  
Sbjct: 43  MNTMFSITLPFLNMVHLYVTVSMVDTAINLNVEPRYVEE------YVDVEPESNAPPVCH 102

Query: 61  DDEMIANNDYKDFRTETNNEFEEMDFDDRKHELPSTTFIELDIDVVDSIREHDLIIVPVV 120
           ++EM+A N+Y +FRTET++EFEEMDFD  ++E+PS  F +LD++ VD I+EHD IIVP+V
Sbjct: 103 EEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNKFTDLDMNAVDGIQEHDPIIVPMV 162

Query: 121 TDNTKLYKGMICEDKEMLQYMLKCFDIKSHAPYEVVESTLTIWVVRCKKWKEDYGWRRRA 180
           TDNTKLY GMICE+KEMLQ+M+KCF IKSHAPYEVVEST T WV+RCKK  E   WR RA
Sbjct: 163 TDNTKLYTGMICENKEMLQHMIKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRA 216

BLAST of PI0006075 vs. NCBI nr
Match: KAA0036768.1 (uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 1.9e-52
Identity = 111/180 (61.67%), Postives = 135/180 (75.00%), Query Frame = 0

Query: 1   MNTMFSFVLPFPNIVHLYVNVSRKDLGININAQPQPFSEYKDKMQYVDANPESVDLPVYD 60
           MNTMFS  L FPN+VHLYV VS  D  IN+N +P+   E      YVD  PES    V  
Sbjct: 43  MNTMFSIALSFPNMVHLYVTVSMVDTAINLNVEPRYVEE------YVDVEPESDAPLVCH 102

Query: 61  DDEMIANNDYKDFRTETNNEFEEMDFDDRKHELPSTTFIELDIDVVDSIREHDLIIVPVV 120
           ++EM+A N+Y +FRTET++EFEEMDFD  ++E+PS TF +LD++ VD I+EHD IIVP+V
Sbjct: 103 EEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMV 162

Query: 121 TDNTKLYKGMICEDKEMLQYMLKCFDIKSHAPYEVVESTLTIWVVRCKKWKEDYGWRRRA 180
           TDNTKLY GMICE+K+MLQ+M+KCF IKSHAPYEVVEST T WV+RCKK  E   WR RA
Sbjct: 163 TDNTKLYTGMICENKKMLQHMVKCFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRA 216

BLAST of PI0006075 vs. NCBI nr
Match: TYK23115.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 215.7 bits (548), Expect = 3.3e-52
Identity = 109/173 (63.01%), Postives = 134/173 (77.46%), Query Frame = 0

Query: 1   MNTMFSFVLPFPNIVHLYVNVSRKDLGININAQPQPFSEYKDKMQYVDANPESVDLPVYD 60
           MNTMFS  LPFPN+VHLYV VS  DL IN+N +P+   E      YVD + ES   PV  
Sbjct: 1   MNTMFSIALPFPNMVHLYVTVSMVDLAINLNVEPKYVEE------YVDVDQESDAPPVCH 60

Query: 61  DDEMIANNDYKDFRTETNNEFEEMDFDDRKHELPSTTFIELDIDVVDSIREHDLIIVPVV 120
           ++EM+A N+Y +FRTET++EFEEMDFD  ++E+PS TF +LD++ VD I+E D IIVP+V
Sbjct: 61  EEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDDIQEQDPIIVPMV 120

Query: 121 TDNTKLYKGMICEDKEMLQYMLKCFDIKSHAPYEVVESTLTIWVVRCKKWKED 174
           TDNTKLY  MICE+KEMLQ+M+KCF IKSHAPYEVVESTLT WV++CKK  ED
Sbjct: 121 TDNTKLYTRMICENKEMLQHMVKCFAIKSHAPYEVVESTLTKWVIQCKKSNED 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SS312.0e-5562.78DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3BAB07.6e-5562.78Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5D3DIM28.4e-5462.22Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7T1X89.3e-5361.67SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3DHR21.6e-5263.01GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
Match NameE-valueIdentityDescription
KAA0034014.14.1e-5562.78uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa][more]
TYJ95836.11.6e-5462.78serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0040476.11.7e-5362.22serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0036768.11.9e-5261.67uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa][more]
TYK23115.13.3e-5263.01GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0006075.1PI0006075.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048507 meristem development