PI0006053 (gene) Melon (PI 482460) v1

Overview


Name	PI0006053
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Protein MNN4-like
Location	chr01: 8761417 .. 8762058 (+)
RNA-Seq Expression	PI0006053
Synteny	PI0006053

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGTCCAACAACCGTCCCACTAATTCGCAAGAGGAAAGACGAGGGAGAGGTCTCTAGGTCAAAGAAGAGTAAGAAACATAAGGCCAAGGACCCTAGTGACCTTATTCCCCTTGCGATTGAAAGCCCACCCAGCCACAAAAACCGAAGTCCACCATCCCGCCTTTACCTTCCAAAACCATTGAAGCACCACCACTTCTCCCCATCCCAGACATCCAAAACGCCAAGCCCTCTCCACCAAATCCAAATACTTACAACCACTACTACTCCCCCGCGGCAAGAGAAAAATCGTCAATCTTGTGTCGTGCAAGCCCTTGATCAAACCACCTTTTCGCCAAACATAGTCCCTCATTCCCAACTCAATGAAGGGATTGATGATTTCATGCAAGACCTCTGCGATACAGACTTTGACATTGAAGATTTAAGGGAGGCAGAGGACGCGACCATAGTTCTTAATGAATCGCAGCATGAAGATGTTCTTGAGGAACACATTCATGACCCATTCCCCAAAGCTAAGAAAATAGCCTTTGAGGAAGCTGGTGAAACGCGAGCTCTTTCGCCGCTGAAGCAAACAGATGATCAGCAAGAAGTTACGGTAGAAGAGAATGAAGACGAGGATTTCTACAAGTTCATCAATTAG

mRNA sequence

ATGAAAAGTCCAACAACCGTCCCACTAATTCGCAAGAGGAAAGACGAGGGAGAGGTCTCTAGGTCAAAGAAGAGTAAGAAACATAAGGCCAAGGACCCTAGTGACCTTATTCCCCTTGCGATTGAAAGCCCACCCAGCCACAAAAACCGAAGTCCACCATCCCGCCTTTACCTTCCAAAACCATTGAAGCACCACCACTTCTCCCCATCCCAGACATCCAAAACGCCAAGCCCTCTCCACCAAATCCAAATACTTACAACCACTACTACTCCCCCGCGGCAAGAGAAAAATCGTCAATCTTGTGTCGTGCAAGCCCTTGATCAAACCACCTTTTCGCCAAACATAGTCCCTCATTCCCAACTCAATGAAGGGATTGATGATTTCATGCAAGACCTCTGCGATACAGACTTTGACATTGAAGATTTAAGGGAGGCAGAGGACGCGACCATAGTTCTTAATGAATCGCAGCATGAAGATGTTCTTGAGGAACACATTCATGACCCATTCCCCAAAGCTAAGAAAATAGCCTTTGAGGAAGCTGGTGAAACGCGAGCTCTTTCGCCGCTGAAGCAAACAGATGATCAGCAAGAAGTTACGGTAGAAGAGAATGAAGACGAGGATTTCTACAAGTTCATCAATTAG

Coding sequence (CDS)

ATGAAAAGTCCAACAACCGTCCCACTAATTCGCAAGAGGAAAGACGAGGGAGAGGTCTCTAGGTCAAAGAAGAGTAAGAAACATAAGGCCAAGGACCCTAGTGACCTTATTCCCCTTGCGATTGAAAGCCCACCCAGCCACAAAAACCGAAGTCCACCATCCCGCCTTTACCTTCCAAAACCATTGAAGCACCACCACTTCTCCCCATCCCAGACATCCAAAACGCCAAGCCCTCTCCACCAAATCCAAATACTTACAACCACTACTACTCCCCCGCGGCAAGAGAAAAATCGTCAATCTTGTGTCGTGCAAGCCCTTGATCAAACCACCTTTTCGCCAAACATAGTCCCTCATTCCCAACTCAATGAAGGGATTGATGATTTCATGCAAGACCTCTGCGATACAGACTTTGACATTGAAGATTTAAGGGAGGCAGAGGACGCGACCATAGTTCTTAATGAATCGCAGCATGAAGATGTTCTTGAGGAACACATTCATGACCCATTCCCCAAAGCTAAGAAAATAGCCTTTGAGGAAGCTGGTGAAACGCGAGCTCTTTCGCCGCTGAAGCAAACAGATGATCAGCAAGAAGTTACGGTAGAAGAGAATGAAGACGAGGATTTCTACAAGTTCATCAATTAG

Protein sequence

MKSPTTVPLIRKRKDEGEVSRSKKSKKHKAKDPSDLIPLAIESPPSHKNRSPPSRLYLPKPLKHHHFSPSQTSKTPSPLHQIQILTTTTTPPRQEKNRQSCVVQALDQTTFSPNIVPHSQLNEGIDDFMQDLCDTDFDIEDLREAEDATIVLNESQHEDVLEEHIHDPFPKAKKIAFEEAGETRALSPLKQTDDQQEVTVEENEDEDFYKFIN

Homology

[Close]

BLAST of PI0006053 vs. ExPASy TrEMBL
Match: A0A5A7VKU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00210 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.5e-04
Identity = 39/120 (32.50%), Postives = 63/120 (52.50%), Query Frame = 0


Query: 94  QEKNRQSCVVQALDQTTFSP--NIVPHSQLNEGIDDFMQDLCDTDFDIEDLREAEDATIV 153
           QEKN  +  V + DQT  +P  N  P+  L   + D             ++++ +DA +V
Sbjct: 23  QEKNSLALFVASTDQTLPTPDLNDPPYCNLLAPVKD-------------EIKDPKDAPLV 82

Query: 154 LNESQHEDVLEEHIHDPFPKAKKIAFEEAGETRALSPLKQTDDQQEVTVEENEDEDFYKF 212
              S  ++VLE++I D   K K+I FE  G+T   SP KQ   QQ+ T E ++++++ KF
Sbjct: 83  PVGSPRKEVLEKNIDDSLLKGKQIVFEVVGQTYPPSPPKQRSKQQDTTKESDDEDEYVKF 129

[Close]

BLAST of PI0006053 vs. ExPASy TrEMBL
Match: A0A5D3BSJ3 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16540G00050 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.4e-04
Identity = 46/137 (33.58%), Postives = 72/137 (52.55%), Query Frame = 0


Query: 61  PLKHHHFSPSQTSKTPSPLHQIQILTTTTTPPRQEKNRQSCVVQALDQTTFSPNIVPHSQ 120
           PL+       + S +P   HQ+QI+T  ++  RQE+N Q+ VV  LD TT     +  S 
Sbjct: 275 PLRRKKKGEEEASSSP---HQVQIITIPSS-LRQEENPQTLVVDFLDPTTIPIPNLNDSP 334

Query: 121 LNEGIDDFMQDLCDTDFDIEDL-----REAEDATIVLNESQHEDVLEEHIHDPFPKAKKI 180
           +++G D F     D+ +D   L     ++  D  +    S +++VLE+ + DP  K K+I
Sbjct: 335 VDQGDDAFQDMFEDSLYDPLTLIHKVFKDPVDVALSPVGSLNKEVLEKAVDDPLLKGKQI 394

Query: 181 AFEEAGETRALSPLKQT 193
           + +E GE R LS  KQT
Sbjct: 395 SSKEVGEARPLSLPKQT 407

The following BLAST results are available for this feature:

BLAST of PI0006053 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006053 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VKU1	5.5e-04	32.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BSJ3	9.4e-04	33.58	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16540G...	[more]

BLAST of PI0006053 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of PI0006053 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006053.1	PI0006053.1	mRNA