PI0006003 (gene) Melon (PI 482460) v1

Overview


Name	PI0006003
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr08: 16584129 .. 16585393 (+)
RNA-Seq Expression	PI0006003
Synteny	PI0006003

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTTCTTCTTCTTCTTCTCAACAATTTGGATCTTTTTTCTTCCTTCTCCCATTTTAATTTCTTCTTCCCTCTTAACTAGATTTGTGTATATGTATATTATTCTCCATATATACATAAAATAATTCTTGTAAAAATTCCTTCCCATATTTTAGATCTTCTCTGTCATGGAGATCATCAACTTTATGAAAACTATGTTCTTCCTCTTTCTCCTTGCTACCCCTTCAATATCTTCTAATTCTAAAGGTATATTATTCATGATGATATTTTAAATAATTAATTATATATAATTTGAAATTGAAATTGAATTTTTTGTGTGTAGGTGGATCATCTGAAAATAATAATGGTGGGATGATAGATGATTCATCTTCTTCTTCATCATCATCATCATCATCATCAAGAAGAGATGATATTGTTTATGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATTTCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCATCAACTTCAACCCAAACGACCTAATTCTCTCAATCCTACTCCATAACCACACAAATAAAGGTTCTATCTTTTTCCTTTTTTTTTTTTTAATTTCAAATCCCCAGCTTGTTTTTTTTTTTCCTCCATTTATTAGCTTAGCTAGCAATGGTTTCTCAATTTTTTTTTAAAAAAACAATAATGTTTTTGAAAAAGTACAAGAGTTTGGTAAATTCTTCATCTCTCTTGATTTTTTGTTATTAAAAAACAATTGCAAAAGTGATACAACTCATTTGACCTATAGATGTACTAGTGTTCGGTAGGAGTGAACATGATAGACTGAAAAATCGAGTCAACTAACCAAAATCAAACAAACCTAAAGTAGTCGATTAGAGATAAGGAGAGGTTCGGTCGGTGTTGGTTGGAAAAAAATCTAAACTGACATCATATTTTTTAAAATTTTAAAGGTTTATTCAACCTAAACCAACTGATCGACTGTGATAAGATCAATTTGAACATTTACTAAACCAACCATAGTTTGATTAAGTGCCGATTTGGTCGAAAAATGCTCACTCCTAAAAATGTTTGTGTGGGTTAGAATCTTCATTAATCCCTTTTTTACTGGAAAGGTTAAAACTAAAATTGGGTAGAAATTTTGGAAACATGCAATAAAATCAAAGCTTTTTTCTTTCCTGTTTTATGTGTTTCCAAAAACATAAATAAAGGATAATTATCTTATGAATTTTGAAAATACCTATTGGGATATTTTCAA

mRNA sequence

ATTCTTCTTCTTCTTCTTCTCAACAATTTGGATCTTTTTTCTTCCTTCTCCCATTTTAATTTCTTCTTCCCTCTTAACTAGATTTGTGTATATGTATATTATTCTCCATATATACATAAAATAATTCTTGTAAAAATTCCTTCCCATATTTTAGATCTTCTCTGTCATGGAGATCATCAACTTTATGAAAACTATGTTCTTCCTCTTTCTCCTTGCTACCCCTTCAATATCTTCTAATTCTAAAGGTGGATCATCTGAAAATAATAATGGTGGGATGATAGATGATTCATCTTCTTCTTCATCATCATCATCATCATCATCAAGAAGAGATGATATTGTTTATGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATTTCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCATCAACTTCAACCCAAACGACCTAATTCTCTCAATCCTACTCCATAACCACACAAATAAAGGTTCTATCTTTTTCCTTTTTTTTTTTTTAATTTCAAATCCCCAGCTTGTTTTTTTTTTTCCTCCATTTATTAGCTTAGCTAGCAATGGTTTCTCAATTTTTTTTTAAAAAAACAATAATGTTTTTGAAAAAGTACAAGAGTTTGGTAAATTCTTCATCTCTCTTGATTTTTTGTTATTAAAAAACAATTGCAAAAGTGATACAACTCATTTGACCTATAGATGTACTAGTGTTCGGTAGGAGTGAACATGATAGACTGAAAAATCGAGTCAACTAACCAAAATCAAACAAACCTAAAGTAGTCGATTAGAGATAAGGAGAGGTTCGGTCGGTGTTGGTTGGAAAAAAATCTAAACTGACATCATATTTTTTAAAATTTTAAAGGTTTATTCAACCTAAACCAACTGATCGACTGTGATAAGATCAATTTGAACATTTACTAAACCAACCATAGTTTGATTAAGTGCCGATTTGGTCGAAAAATGCTCACTCCTAAAAATGTTTGTGTGGGTTAGAATCTTCATTAATCCCTTTTTTACTGGAAAGGTTAAAACTAAAATTGGGTAGAAATTTTGGAAACATGCAATAAAATCAAAGCTTTTTTCTTTCCTGTTTTATGTGTTTCCAAAAACATAAATAAAGGATAATTATCTTATGAATTTTGAAAATACCTATTGGGATATTTTCAA

Coding sequence (CDS)

ATGGAGATCATCAACTTTATGAAAACTATGTTCTTCCTCTTTCTCCTTGCTACCCCTTCAATATCTTCTAATTCTAAAGGTGGATCATCTGAAAATAATAATGGTGGGATGATAGATGATTCATCTTCTTCTTCATCATCATCATCATCATCATCAAGAAGAGATGATATTGTTTATGAAATAGATTATAGAGGACCAGAAACTCATTCATCTCATCATATTTCTCCACCTGATCACTCCCATGGAAGAAGGCCTTGGATTATTCATCATCATCATCAACTTCAACCCAAACGACCTAATTCTCTCAATCCTACTCCATAA

Protein sequence

MEIINFMKTMFFLFLLATPSISSNSKGGSSENNNGGMIDDSSSSSSSSSSSSRRDDIVYEIDYRGPETHSSHHISPPDHSHGRRPWIIHHHHQLQPKRPNSLNPTP

Homology

[Close]

BLAST of PI0006003 vs. ExPASy TrEMBL
Match: A0A5A7U1B9 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00720 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 85/109 (77.98%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   MEIINFMKTMFFLFLLATPSISSNSKGGSSENNNGGMIDDSSSSSSSSSSSSRRDDIVYE 60
           MEI+NFM TMFFLFLLATPS++S S+GGSSE NNGG+ DD       SSSSSRR D VYE
Sbjct: 1   MEIVNFMTTMFFLFLLATPSMAS-SEGGSSEYNNGGIDDD------DSSSSSRRYDSVYE 60

Query: 61  IDYRGPETHSSHHISPPDHSHGRRPWIIHHHHQ--LQPK-RPNSLNPTP 107
           IDYRGPETHSSHHISPPDHSHGRRPWIIHHHH   LQPK + NSLNPTP
Sbjct: 61  IDYRGPETHSSHHISPPDHSHGRRPWIIHHHHHQLLQPKQQTNSLNPTP 102

[Close]

BLAST of PI0006003 vs. ExPASy TrEMBL
Match: A0A0A0KIB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.5e-29
Identity = 79/109 (72.48%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 1   MEIINFMKTMFFLFLL-ATPSISSNSKGGSSENNNGGMIDDSSSSSSSSSSSSRRDDIVY 60
           MEI+NFM TMFFLFLL ATPS+SS SKG +SEN+NGG+                 DDIVY
Sbjct: 1   MEIVNFMTTMFFLFLLAATPSLSS-SKGRASENSNGGI-----------------DDIVY 60

Query: 61  EIDYRGPETHSSHHISPPDHSHGRRPWIIHHH-HQ-LQPKRPNSLNPTP 107
           EIDYRGPETHSSHHISPPDHSHGRRPWIIHHH HQ LQPK+PNSL+PTP
Sbjct: 61  EIDYRGPETHSSHHISPPDHSHGRRPWIIHHHRHQLLQPKQPNSLDPTP 91

[Close]

BLAST of PI0006003 vs. ExPASy TrEMBL
Match: A0A6J1IQ06 (uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.2e-11
Identity = 53/95 (55.79%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 4  INFMKTMFFLFLLATPSI--SSNSKGGSSENNNGGMIDDSSSSSSSSSSSSRRDDIVYEI 63
          ++F  T+FFLFLL TPS    S+S+GGS    NGG+             SS+    VYEI
Sbjct: 3  MSFTTTVFFLFLLLTPSFCCCSSSEGGS---ENGGL------------GSSQ----VYEI 62

Query: 64 DYRGPETHSSHHISPPDHSHGRRPWIIHHHHQLQP 97
          DYRGPETHSS HISPP  SHG RPWI+HHHH L P
Sbjct: 63 DYRGPETHSS-HISPPHPSHG-RPWIVHHHHPLHP 76

[Close]

BLAST of PI0006003 vs. ExPASy TrEMBL
Match: A0A6J1EDR4 (uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC111433241 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.2e-11
Identity = 53/95 (55.79%), Postives = 60/95 (63.16%), Query Frame = 0


Query: 4  INFMKTMFFLFLLATPSI--SSNSKGGSSENNNGGMIDDSSSSSSSSSSSSRRDDIVYEI 63
          ++F  T+FF+FLL TPS    S+ +GGS    NGGM            SSS     VYEI
Sbjct: 3  MSFTTTVFFIFLLLTPSFCCCSSYEGGS---ENGGM-----------GSSSE----VYEI 62

Query: 64 DYRGPETHSSHHISPPDHSHGRRPWIIHHHHQLQP 97
          DYRGPETHSS HISPP HSHG RPWI+HH H L P
Sbjct: 63 DYRGPETHSS-HISPPHHSHG-RPWIVHHRHPLHP 77

[Close]

BLAST of PI0006003 vs. ExPASy TrEMBL
Match: A0A6J1CPX6 (uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013652 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.6e-10
Identity = 58/99 (58.59%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 9   TMFFLFL-LATPSISSNSKGGSSENNNGGMIDDSSSSSSSSSSSSRRDDIVYEIDYRGPE 68
           T FFLFL LATPSISS SKGGS    NG M   S                VYEIDYRGPE
Sbjct: 10  TFFFLFLILATPSISS-SKGGS---ENGAMEISSE---------------VYEIDYRGPE 69

Query: 69  THSSHHISPPDHSHGRRPWIIHHHHQLQPKRPNSLNPTP 107
           THSSH   P  HSHG RPWIIHH    QPK  +SLNP+P
Sbjct: 70  THSSHFSPPDHHSHG-RPWIIHH----QPKL-HSLNPSP 83

[Close]

BLAST of PI0006003 vs. NCBI nr
Match: KAA0047279.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 3.8e-32
Identity = 85/109 (77.98%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   MEIINFMKTMFFLFLLATPSISSNSKGGSSENNNGGMIDDSSSSSSSSSSSSRRDDIVYE 60
           MEI+NFM TMFFLFLLATPS++S S+GGSSE NNGG+ DD       SSSSSRR D VYE
Sbjct: 1   MEIVNFMTTMFFLFLLATPSMAS-SEGGSSEYNNGGIDDD------DSSSSSRRYDSVYE 60

Query: 61  IDYRGPETHSSHHISPPDHSHGRRPWIIHHHHQ--LQPK-RPNSLNPTP 107
           IDYRGPETHSSHHISPPDHSHGRRPWIIHHHH   LQPK + NSLNPTP
Sbjct: 61  IDYRGPETHSSHHISPPDHSHGRRPWIIHHHHHQLLQPKQQTNSLNPTP 102

[Close]

BLAST of PI0006003 vs. NCBI nr
Match: KGN48132.1 (hypothetical protein Csa_003970 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 79/109 (72.48%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 1   MEIINFMKTMFFLFLL-ATPSISSNSKGGSSENNNGGMIDDSSSSSSSSSSSSRRDDIVY 60
           MEI+NFM TMFFLFLL ATPS+SS SKG +SEN+NGG+                 DDIVY
Sbjct: 1   MEIVNFMTTMFFLFLLAATPSLSS-SKGRASENSNGGI-----------------DDIVY 60

Query: 61  EIDYRGPETHSSHHISPPDHSHGRRPWIIHHH-HQ-LQPKRPNSLNPTP 107
           EIDYRGPETHSSHHISPPDHSHGRRPWIIHHH HQ LQPK+PNSL+PTP
Sbjct: 61  EIDYRGPETHSSHHISPPDHSHGRRPWIIHHHRHQLLQPKQPNSLDPTP 91

[Close]

BLAST of PI0006003 vs. NCBI nr
Match: XP_038881428.1 (uncharacterized protein LOC120072958 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16
Identity = 71/100 (71.00%), Postives = 75/100 (75.00%), Query Frame = 0


Query: 1   MEIINFMKTMFFLFLLATPSISSNSKGGSSENNNGGMIDDSSSSSSSSSSSSRRDDIVYE 60
           ME+I+FM TMFFLFLLATPS+SS  KGGS    NG M  D SSSSSSS         VYE
Sbjct: 1   MEMISFM-TMFFLFLLATPSLSS-PKGGS---ENGEM--DFSSSSSSSE--------VYE 60

Query: 61  IDYRGPETHSSHHISPPDHSHGRRPWIIHH-HHQLQPKRP 100
           IDYRGPETHSS HISPPDHSHG RPWI HH  HQLQPK+P
Sbjct: 61  IDYRGPETHSS-HISPPDHSHG-RPWINHHDQHQLQPKQP 83

[Close]

BLAST of PI0006003 vs. NCBI nr
Match: XP_023543089.1 (uncharacterized protein LOC111803061 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 78.2 bits (191), Expect = 4.8e-11
Identity = 54/95 (56.84%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 4  INFMKTMFFLFLLATPSI--SSNSKGGSSENNNGGMIDDSSSSSSSSSSSSRRDDIVYEI 63
          ++F  T+FFLFLL TPS+   S+++GGS    NGGM            SSS     VYEI
Sbjct: 3  MSFRITVFFLFLLLTPSLCCCSSNEGGS---ENGGM-----------GSSSE----VYEI 62

Query: 64 DYRGPETHSSHHISPPDHSHGRRPWIIHHHHQLQP 97
          DYRGPETHSS HISPP  SHG RPWI+HHHH L P
Sbjct: 63 DYRGPETHSS-HISPPHPSHG-RPWIVHHHHPLHP 77

[Close]

BLAST of PI0006003 vs. NCBI nr
Match: XP_022979166.1 (uncharacterized protein LOC111478885 [Cucurbita maxima])

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-10
Identity = 53/95 (55.79%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 4  INFMKTMFFLFLLATPSI--SSNSKGGSSENNNGGMIDDSSSSSSSSSSSSRRDDIVYEI 63
          ++F  T+FFLFLL TPS    S+S+GGS    NGG+             SS+    VYEI
Sbjct: 3  MSFTTTVFFLFLLLTPSFCCCSSSEGGS---ENGGL------------GSSQ----VYEI 62

Query: 64 DYRGPETHSSHHISPPDHSHGRRPWIIHHHHQLQP 97
          DYRGPETHSS HISPP  SHG RPWI+HHHH L P
Sbjct: 63 DYRGPETHSS-HISPPHPSHG-RPWIVHHHHPLHP 76

[Close]

BLAST of PI0006003 vs. TAIR 10
Match: AT5G03120.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 2.7e-04
Identity = 22/43 (51.16%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 48 SSSSSRRDDIVYEIDYRGPETHSSHHISPPDHSHGRRPWIIHH 91
          +  S + D  VYEIDYRGPETH+S    PP+  HG+ P+I H+
Sbjct: 22 AKGSEQTDSEVYEIDYRGPETHNSR--PPPETMHGKPPYIHHN 62

The following BLAST results are available for this feature:

BLAST of PI0006003 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006003 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1B9	1.8e-32	77.98	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0KIB6	5.5e-29	72.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G444970 PE=4 SV=1	[more]
A0A6J1IQ06	5.2e-11	55.79	uncharacterized protein LOC111478885 OS=Cucurbita maxima OX=3661 GN=LOC111478885...	[more]
A0A6J1EDR4	5.2e-11	55.79	uncharacterized protein LOC111433241 OS=Cucurbita moschata OX=3662 GN=LOC1114332...	[more]
A0A6J1CPX6	2.6e-10	58.59	uncharacterized protein LOC111013652 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of PI0006003 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047279.1	3.8e-32	77.98	putative transmembrane protein [Cucumis melo var. makuwa]	[more]
KGN48132.1	1.1e-28	72.48	hypothetical protein Csa_003970 [Cucumis sativus]	[more]
XP_038881428.1	1.3e-16	71.00	uncharacterized protein LOC120072958 [Benincasa hispida]	[more]
XP_023543089.1	4.8e-11	56.84	uncharacterized protein LOC111803061 [Cucurbita pepo subsp. pepo]	[more]
XP_022979166.1	1.1e-10	55.79	uncharacterized protein LOC111478885 [Cucurbita maxima]	[more]

BLAST of PI0006003 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03120.1	2.7e-04	51.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006003.1	PI0006003.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane