PI0005918 (gene) Melon (PI 482460) v1

Overview
NamePI0005918
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetroelement pol polyprotein-like
Locationchr01: 18777354 .. 18777755 (+)
RNA-Seq ExpressionPI0005918
SyntenyPI0005918
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAACCTCCTCCGCGAATACATGCAGAAAAATGATGCTCTTCTGCAAAGGCAGGCTTCATCAATTCGTAATCTGGAGGTACAGTTAGGTCAGCTAGCTAGTGATTTCTCCGGAAGACAACAAGGATCCCTCCCAAGTAATGCAGAAACGCCAAATCAGGCAGGAGGATCTGGTAAAGAGAAGTGTCACGCGGTGACACTTCGCAGTGGAAGGAATTTAACCATCCGCGATCCTGACGCTGAACGTAGTTACCCCACTTCTAACTCTACTGCCGAGATTGACAGTTCAAGTAGAATTCCTAATCTTATAAATTTCTCTTTAACTGACAATGTTTCTTCCTCGCAGAATAATGACGTACCAAGCAAGGGTTTTGAGAGCAAGGGGCAACGGAATCCATAG

mRNA sequence

ATGGAAAACCTCCTCCGCGAATACATGCAGAAAAATGATGCTCTTCTGCAAAGGCAGGCTTCATCAATTCGTAATCTGGAGGTACAGTTAGGTCAGCTAGCTAGTGATTTCTCCGGAAGACAACAAGGATCCCTCCCAAGTAATGCAGAAACGCCAAATCAGGCAGGAGGATCTGGTAAAGAGAAGTGTCACGCGGTGACACTTCGCAGTGGAAGGAATTTAACCATCCGCGATCCTGACGCTGAACGTAGTTACCCCACTTCTAACTCTACTGCCGAGATTGACAGTTCAAGTAGAATTCCTAATCTTATAAATTTCTCTTTAACTGACAATGTTTCTTCCTCGCAGAATAATGACGTACCAAGCAAGGGTTTTGAGAGCAAGGGGCAACGGAATCCATAG

Coding sequence (CDS)

ATGGAAAACCTCCTCCGCGAATACATGCAGAAAAATGATGCTCTTCTGCAAAGGCAGGCTTCATCAATTCGTAATCTGGAGGTACAGTTAGGTCAGCTAGCTAGTGATTTCTCCGGAAGACAACAAGGATCCCTCCCAAGTAATGCAGAAACGCCAAATCAGGCAGGAGGATCTGGTAAAGAGAAGTGTCACGCGGTGACACTTCGCAGTGGAAGGAATTTAACCATCCGCGATCCTGACGCTGAACGTAGTTACCCCACTTCTAACTCTACTGCCGAGATTGACAGTTCAAGTAGAATTCCTAATCTTATAAATTTCTCTTTAACTGACAATGTTTCTTCCTCGCAGAATAATGACGTACCAAGCAAGGGTTTTGAGAGCAAGGGGCAACGGAATCCATAG

Protein sequence

MENLLREYMQKNDALLQRQASSIRNLEVQLGQLASDFSGRQQGSLPSNAETPNQAGGSGKEKCHAVTLRSGRNLTIRDPDAERSYPTSNSTAEIDSSSRIPNLINFSLTDNVSSSQNNDVPSKGFESKGQRNP
Homology
BLAST of PI0005918 vs. ExPASy TrEMBL
Match: A0A5A7TGS2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00540 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.1e-29
Identity = 78/125 (62.40%), Postives = 92/125 (73.60%), Query Frame = 0

Query: 3   NLLREYMQKNDALLQRQASSIRNLEVQLGQLASDFSGRQQGSLPSNAETPNQAGGSGKEK 62
           N ++   Q NDALLQ QASSI+NLE+QLGQL S+ S R +GSLPSN ETPNQ GGSGKEK
Sbjct: 18  NFIQAMQQWNDALLQSQASSIKNLELQLGQLFSNISRRPKGSLPSNTETPNQVGGSGKEK 77

Query: 63  CHAVTLRSGRNLTIRDPDAERSYPTSNSTAEIDSSSRIPNLINFSLTDNVSSSQNNDVPS 122
           C  VTLRS RNLTIR+P  ER   TS ST +I S+S   N +N SLT+N SS QN ++P+
Sbjct: 78  CQVVTLRSRRNLTIREPKFERRNSTSTSTTKIGSASNDSNPLNSSLTNNTSSLQNKNIPN 137

Query: 123 KGFES 128
           K  ES
Sbjct: 138 KEVES 142

BLAST of PI0005918 vs. ExPASy TrEMBL
Match: A0A0A0KN83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.0e-16
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 1   MENLLREYMQKNDALLQRQASSIRNLEVQLGQLASDFSGRQQGSLPSNAETPNQAGGSGK 60
           ME L REYMQ+NDALLQ QASSI+NLE+QLGQLA+D S R +G+L  N +TP Q GGS  
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 61  EKCHAVTLRSGRNLTIRDPDAER 84
           +K   VTLRS RNLTI + ++E+
Sbjct: 108 KKSQLVTLRSRRNLTIHELESEQ 130

BLAST of PI0005918 vs. ExPASy TrEMBL
Match: A0A0A0KMN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.4e-15
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 0

Query: 1   MENLLREYMQKNDALLQRQASSIRNLEVQLGQLASDFSGRQQGSLPSNAETPNQAGGSGK 60
           ME+L +EYMQ+NDALLQ QA+SI+NLE+Q+GQ+A+D S + +G+LPSN E P Q G SGK
Sbjct: 70  MESLFQEYMQRNDALLQSQAASIKNLELQMGQIANDISRQPKGTLPSNTEIPIQGGSSGK 129

Query: 61  EKCHAVTL 69
           EKC AVTL
Sbjct: 130 EKCQAVTL 137

BLAST of PI0005918 vs. ExPASy TrEMBL
Match: A0A5D3C0P6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G002000 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 0

Query: 1   MENLLREYMQKNDALLQRQASSIRNLEVQLGQLASDFSGRQQGSLPSNAETPNQAGGSGK 60
           ME LL +YMQ+ND LLQ QA+ ++NLE+QLGQLA DF GR +G  PSN ETPNQ GG GK
Sbjct: 1   METLLLKYMQRNDVLLQSQATFLKNLELQLGQLARDFFGRLKGPFPSNTETPNQMGGYGK 60

Query: 61  EKC-HAVTLRSGRNLTIRDPDAERSY---PTSNSTAEIDSSSRIPNLINF 107
           EKC +   L      T RD   ++ +    +SN  + +    ++P+ + F
Sbjct: 61  EKCQNNNVLNKQIESTRRDEQHDKVFTKVTSSNPLSPLPFLEQMPSYVKF 110

BLAST of PI0005918 vs. ExPASy TrEMBL
Match: A0A5A7UDZ7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00900 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 0

Query: 52  PNQAGGSGKEKCHAVTLRSGRNLTIRDPDAERSYPTSNSTAEIDSSSRIPNLINFSLTDN 111
           PNQAGGS KEK   +TL+SGRNLTIR+P++    PTS ST ++D+SS+    +NFSLT++
Sbjct: 2   PNQAGGSDKEKYQVMTLKSGRNLTIREPNSGCKNPTSTSTTKVDNSSKSSKPLNFSLTND 61

Query: 112 VSSSQNNDVPSKGFESKGQ 131
            SS Q N++P+K  +S  Q
Sbjct: 62  ASSLQYNNIPNKEVKSTSQ 80

BLAST of PI0005918 vs. NCBI nr
Match: KAA0041246.1 (uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK16045.1 uncharacterized protein E5676_scaffold32G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 6.4e-29
Identity = 78/125 (62.40%), Postives = 92/125 (73.60%), Query Frame = 0

Query: 3   NLLREYMQKNDALLQRQASSIRNLEVQLGQLASDFSGRQQGSLPSNAETPNQAGGSGKEK 62
           N ++   Q NDALLQ QASSI+NLE+QLGQL S+ S R +GSLPSN ETPNQ GGSGKEK
Sbjct: 18  NFIQAMQQWNDALLQSQASSIKNLELQLGQLFSNISRRPKGSLPSNTETPNQVGGSGKEK 77

Query: 63  CHAVTLRSGRNLTIRDPDAERSYPTSNSTAEIDSSSRIPNLINFSLTDNVSSSQNNDVPS 122
           C  VTLRS RNLTIR+P  ER   TS ST +I S+S   N +N SLT+N SS QN ++P+
Sbjct: 78  CQVVTLRSRRNLTIREPKFERRNSTSTSTTKIGSASNDSNPLNSSLTNNTSSLQNKNIPN 137

Query: 123 KGFES 128
           K  ES
Sbjct: 138 KEVES 142

BLAST of PI0005918 vs. NCBI nr
Match: WP_217833224.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 101.3 bits (251), Expect = 6.7e-18
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 0

Query: 1  MENLLREYMQKNDALLQRQASSIRNLEVQLGQLASDFSGRQQGSLPSNAETPNQAGGSGK 60
          ME LL+EYMQKNDAL+Q QASSIRNL++QLGQ+A +F  RQ+GSLPSN E P   G SGK
Sbjct: 4  MEALLKEYMQKNDALMQTQASSIRNLKLQLGQIAGEFKTRQKGSLPSNTEAPRGMGSSGK 63

Query: 61 EKCHAVTLRSGRNLTIRDPD 81
          E+C AVTLRSG+ L     D
Sbjct: 64 EQCQAVTLRSGKVLHTETQD 83

BLAST of PI0005918 vs. NCBI nr
Match: KGN51008.1 (hypothetical protein Csa_008461 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 6.2e-16
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 0

Query: 1   MENLLREYMQKNDALLQRQASSIRNLEVQLGQLASDFSGRQQGSLPSNAETPNQAGGSGK 60
           ME L REYMQ+NDALLQ QASSI+NLE+QLGQLA+D S R +G+L  N +TP Q GGS  
Sbjct: 48  MEALFREYMQRNDALLQSQASSIKNLELQLGQLANDVSERPKGALLCNTKTPIQRGGSSN 107

Query: 61  EKCHAVTLRSGRNLTIRDPDAER 84
           +K   VTLRS RNLTI + ++E+
Sbjct: 108 KKSQLVTLRSRRNLTIHELESEQ 130

BLAST of PI0005918 vs. NCBI nr
Match: XP_038896707.1 (uncharacterized protein LOC120084967 [Benincasa hispida])

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-14
Identity = 53/108 (49.07%), Postives = 71/108 (65.74%), Query Frame = 0

Query: 1   MENLLREYMQKNDALLQRQASSIRNLEVQLGQLASDFSGRQQGSLPSNAETPNQAGGSGK 60
           +ENLL+EY+ +NDALL+ QASSIRNLE+Q+GQ+A++   RQ   LPSN ETP     +GK
Sbjct: 171 LENLLKEYIAQNDALLKIQASSIRNLEIQVGQIANELKSRQPRVLPSNIETPR--NNNGK 230

Query: 61  EKCHAVTLRSGRNLTIRDPDAERSYPTSNS-TAEIDSSSRIPNLINFS 108
           E+CH VTLRSG+ L  R  ++  S P     T  +D   R+P   + S
Sbjct: 231 EQCHMVTLRSGKALEKRRMNSRNSSPLKERITRSMDQEKRMPETTSHS 276

BLAST of PI0005918 vs. NCBI nr
Match: XP_038891676.1 (uncharacterized protein LOC120081070 [Benincasa hispida])

HSP 1 Score: 90.1 bits (222), Expect = 1.5e-14
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 0

Query: 1   MENLLREYMQKNDALLQRQASSIRNLEVQLGQLASDFSGRQQGSLPSNAETPNQAGGSGK 60
           +ENLL+EY+ +NDALL+ QASSIRNLE+Q+ Q+AS+   RQ G LPSN ETP     +GK
Sbjct: 163 LENLLKEYIAQNDALLKSQASSIRNLEIQVAQIASELKNRQPGVLPSNTETP--GNNNGK 222

Query: 61  EKCHAVTLRSGRNLTIRDPDAERSYPT 88
           EKCH VTL++G+ L  R  +   S P+
Sbjct: 223 EKCHMVTLQNGKALEERRMNPRNSSPS 247

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TGS23.1e-2962.40Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KN833.0e-1662.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G403040 PE=4 SV=1[more]
A0A0A0KMN34.4e-1566.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G055570 PE=4 SV=1[more]
A0A5D3C0P62.4e-1346.36Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UDZ71.7e-1153.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0041246.16.4e-2962.40uncharacterized protein E6C27_scaffold128G002220 [Cucumis melo var. makuwa] >TYK... [more]
WP_217833224.16.7e-1866.25hypothetical protein, partial [Synechococcus sp. PCC 7002][more]
KGN51008.16.2e-1662.65hypothetical protein Csa_008461 [Cucumis sativus][more]
XP_038896707.11.2e-1449.07uncharacterized protein LOC120084967 [Benincasa hispida][more]
XP_038891676.11.5e-1455.17uncharacterized protein LOC120081070 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..133

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0005918.1PI0005918.1mRNA