PI0005801 (gene) Melon (PI 482460) v1

Overview


Name	PI0005801
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
Location	chr10: 21270663 .. 21273007 (+)
RNA-Seq Expression	PI0005801
Synteny	PI0005801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCCTTCACAATTAAAAAGCCCAATTCTCTCACCTTCCAACACATAGATATTTTCACAACGAGAAACAAAATATTTTTCCGATTGGCGGCGGCGGCGGCGGCAGCGGAAGCGTGATCTTACGACATGGCCGAGAACAAAGAATCTATAAACCAAAACCCTACATTGCCAAATTCTGTGCTAAAAAATCAGCAGAAAGTTGGGGATTATCAGCAGAAAGTTGGGGATTATCAGCAGAAGTTGGGGAAAATCAGCAGAAAGTTGGGGGAAATCAGCAGAACGTTGGGGATTATCAGCAGAAAGTTGGGGAAAATCAGCTTAAAGTTGGGGAAAATCAGCAGAAAGTTGGGGAAAATCAGCTTAAAGTTGGGGAAAATCAGCAGAAAGTTGGGAAAATCAGCAGAAAGTTGGGGATTATCAGCAGAAAGTTGGGGATCATCCGCAAAACGTTGGGGATTATCACCAGAACGTTGGGGATTATCACCAGAAAGTTGATTATCACCAGAACGTTGATTATCACCGGAACGTTGGGGATTATCACCAGAACGTTAACGTCGAGGATTATCACCAGAACGTTGGGGATTATCACCAGAACGTTAACGTTGGGGATTATCACCAGAACGTTGGGGATTATCAGCAGAAAGTTGCGGATAATCCGCAGAAAGTTGGGGATTATCAGAAGAAAGAAGAAATTAATCCACCTAAGAAGCCTGACGTAGTCACTATTCCGGCACCGGAAGTGGTTCCCCCTCCCCCGCTGAAGGCTATGTTCAACCACCACCCTGGGAAGTTTGTACATCCGTCAATCCGGTGGCCGGTATGATTCCTTCTCCCATTCTCTCATATGTGCCCTCGATTTTTCTGTTTTAAATTTTAGTGGTCTTTTATTTTCTCTTAGTTTTGGTTTTTAAAACGTTGCATTTTAGTTTAGTTTTGGATTGATTTTAATTTATGGTAGTTTATAAATTTCAAAATGTCCAACTATGATATTGATATTGAGAAATTATCACAAAAACATTAATAACCATGGTTTAATTGTGACTTTAAGGATCGAAACGGTCATATTTTGAAATTTAGGGATTAAACTCAAGACTTAAAATTGAAAAAGAGTGATATTTTGAAATTAAAATAGATACTAGACACAAAAAAAAATAAATTATTTTCCTTTATTTTTTAGTTCAACAACATACGTTAATGACTTATTAAACACAATTTTAAGTTTAGGTTTTGTAGCCAAAGTGAACTTAACTATTTACCATGACATTTCATTACAGAGGTGATAGGTTTAATCTCCATTCTAAAATGTAGGTTTCTAAATTTAGTTGATTTGTTCGATAAGTATTTTATATTCTAAACTTTGGGTTGATTTTCATAAAAATTATTCTTTCATTGATTTGTTTAGAGATGGGTGCAATAATTTTTATCAATTAAATAGTTAGTTAATTTCTGATGAAATTTCTTAAATGAAATAAAATTTCATAATAAGTTATTTAATTAATTTTCAGGTAAAAAAGATAGTCCAAATATATCAAATTATTTATCAAATATCATTTTCCCTATACATAAGAGTTCAAAATATTTCAATAAACCAATACATATGTTTGTTTTATGTGTGTATATATAATAATTTTTATTAAAAAATTAATGAAGAAAATAAATGGATGAGCAACGGTGAATGCATTCTCTGTCCCTATTTAATTCTTGGAAAATTTTCTTATCCTATGCTTCGCAAAAAGACAGTCCCCACAGAGCTCTAGCTCGAAAAAGTAGACCTTTTTGTATGTACTGCAACTCCGCTAGCAATGAAGTATTACTCATTTGGATTCTTTGTAAACAGTTTTCACGATCAAAATTCATGGCTGCAATGCAAATGCTATACTAATTACTACCAAACAAATTGCAGTTTCAACTAACAATAATAAGTAATAAGTAACAATTAATAATTCAGCTTTTTTATCGTATATATGAAAAATTGTTTTAATGGTAATTCATTTCATCTACTTTCAGTTATTTGCTTTAGGAGGATATCTCATCATAAGGTGGGCTTGGAAAAAATGGAGACCTGACGACGACGACGACGGCGGAAGGAAAAAATAATATTTGAATTCCATATTTGAAAGCAATCGATAACTATAAGCATTTGAAAATTTAATGCAGTTTGTTACTCTATATATTATTTATTATACTGATTTGTTATGTGATTGCCAATTTATTTATAAATTTGAGCCATGATAATAAGGCTTCTAATGATATTTTTTTAATTACTATGTTTGTTGTAATAGTTACTGTACTAAATATTATTTTTTAAAAGTGAATACTAATTATTTCGATACTTTTACAATTTA

mRNA sequence

CTTCCCTTCACAATTAAAAAGCCCAATTCTCTCACCTTCCAACACATAGATATTTTCACAACGAGAAACAAAATATTTTTCCGATTGGCGGCGGCGGCGGCGGCAGCGGAAGCGTGATCTTACGACATGGCCGAGAACAAAGAATCTATAAACCAAAACCCTACATTGCCAAATTCTGTGCTAAAAAATCAGCAGAAAGTTGGGGATTATCAGCAGAAAGTTGGGGATTATCAGCAGAAGTTGGGGAAAATCAGCAGAAAGTTGGGGGAAATCAGCAGAACGTTGGGGATTATCAGCAGAAAGTTGGGGAAAATCAGCTTAAAGTTGGGGAAAATCAGCAGAAATTGGGGAAAATCAGCAGAAAGTTGGGAAAATCAGCAGAAAGTTGGGGATTATCAGCAGAAAGTTGGGGATCATCCGCAAAACGTTGGGGATTATCACCAGAACGTTGGGGATTATCACCAGAAAGTTGATTATCACCAGAACGTTGATTATCACCGGAACGTTGGGGATTATCACCAGAACGTTAACGTCGAGGATTATCACCAGAACGTTGGGGATTATCACCAGAACGTTAACGTTGGGGATTATCACCAGAACGTTGGGGATTATCAGCAGAAAGTTGCGGATAATCCGCAGAAAGTTGGGGATTATCAGAAGAAAGAAGAAATTAATCCACCTAAGAAGCCTGACGTAGTCACTATTCCGGCACCGGAAGTGGTTCCCCCTCCCCCGCTGAAGGCTATGTTCAACCACCACCCTGGGAAGTTTGTACATCCGTCAATCCGGTGGCCGTTATTTGCTTTAGGAGGATATCTCATCATAAGGTGGGCTTGGAAAAAATGGAGACCTGACGACGACGACGACGGCGGAAGGAAAAAATAATATTTGAATTCCATATTTGAAAGCAATCGATAACTATAAGCATTTGAAAATTTAATGCAGTTTGTTACTCTATATATTATTTATTATACTGATTTGTTATGTGATTGCCAATTTATTTATAAATTTGAGCCATGATAATAAGGCTTCTAATGATATTTTTTTAATTACTATGTTTGTTGTAATAGTTACTGTACTAAATATTATTTTTTAAAAGTGAATACTAATTATTTCGATACTTTTACAATTTA

Coding sequence (CDS)

ATGGCCGAGAACAAAGAATCTATAAACCAAAACCCTACATTGCCAAATTCTGTGCTAAAAAATCAGCAGAAAGTTGGGGATTATCAGCAGAAAGTTGGGGATTATCAGCAGAAGTTGGGGAAAATCAGCAGAAAGTTGGGGGAAATCAGCAGAACGTTGGGGATTATCAGCAGAAAGTTGGGGAAAATCAGCTTAAAGTTGGGGAAAATCAGCAGAAATTGGGGAAAATCAGCAGAAAGTTGGGAAAATCAGCAGAAAGTTGGGGATTATCAGCAGAAAGTTGGGGATCATCCGCAAAACGTTGGGGATTATCACCAGAACGTTGGGGATTATCACCAGAAAGTTGATTATCACCAGAACGTTGATTATCACCGGAACGTTGGGGATTATCACCAGAACGTTAACGTCGAGGATTATCACCAGAACGTTGGGGATTATCACCAGAACGTTAACGTTGGGGATTATCACCAGAACGTTGGGGATTATCAGCAGAAAGTTGCGGATAATCCGCAGAAAGTTGGGGATTATCAGAAGAAAGAAGAAATTAATCCACCTAAGAAGCCTGACGTAGTCACTATTCCGGCACCGGAAGTGGTTCCCCCTCCCCCGCTGAAGGCTATGTTCAACCACCACCCTGGGAAGTTTGTACATCCGTCAATCCGGTGGCCGTTATTTGCTTTAGGAGGATATCTCATCATAAGGTGGGCTTGGAAAAAATGGAGACCTGACGACGACGACGACGGCGGAAGGAAAAAATAA

Protein sequence

MAENKESINQNPTLPNSVLKNQQKVGDYQQKVGDYQQKLGKISRKLGEISRTLGIISRKLGKISLKLGKISRNWGKSAESWENQQKVGDYQQKVGDHPQNVGDYHQNVGDYHQKVDYHQNVDYHRNVGDYHQNVNVEDYHQNVGDYHQNVNVGDYHQNVGDYQQKVADNPQKVGDYQKKEEINPPKKPDVVTIPAPEVVPPPPLKAMFNHHPGKFVHPSIRWPLFALGGYLIIRWAWKKWRPDDDDDGGRKK

Homology

[Close]

BLAST of PI0005801 vs. ExPASy TrEMBL
Match: A0A1S3BGK5 (uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.9e-21
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 168 DNPQKVGDYQKKEEINPPKKPDVVTIPAPEVVPPPPLKAMFNHHPGKFVHPSIRWPLFAL 227
           +N QKV D QKKEE NPP+KPDVVTIPA  VV PPP+KA F   PGKF HP++ WPL AL
Sbjct: 21  NNRQKVVD-QKKEETNPPEKPDVVTIPASGVVSPPPVKAEFK-FPGKFSHPAVLWPLSAL 80

Query: 228 GGYLIIRWAWKKWRPDDDD 247
           GG+LII WAW+KWRPDDD+
Sbjct: 81  GGFLIIWWAWQKWRPDDDE 97

[Close]

BLAST of PI0005801 vs. ExPASy TrEMBL
Match: A0A0A0KRF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.6e-18
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 166 VADNPQKVGDY-QKKEEIN-PPKKPDVVTIPAPEVVPPPPLKAMFNHHPGKFVHPSIRWP 225
           V +N QK+ +  QKKEEIN P  K +VVTIPAPEVVPPPP+KA   HH GKF HP+I W 
Sbjct: 18  VRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKAEIKHH-GKFSHPAIVWS 77

Query: 226 LFALGGYLIIRWAWKKWRPDDDD 247
           L ALGG+ II++AWKKW+P DD+
Sbjct: 78  LCALGGFFIIKFAWKKWKPKDDE 99

[Close]

BLAST of PI0005801 vs. ExPASy TrEMBL
Match: A0A6J1GYG5 (uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC111458630 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-15
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 169 NPQKVGDYQKKEEINPPKKPDVVTIPAPEVVPPPPLKAMFNHHPGKFVHPSIRWPLFALG 228
           N  K+GD +++    PP+KP++VT+P  EV PPPPL A     PGKF HP+IRWPL+ALG
Sbjct: 39  NLNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTAECK-RPGKFSHPAIRWPLYALG 98

Query: 229 GYLIIRWAWKKWRPDDDD 247
           G+LI RWA KKW+  +D+
Sbjct: 99  GFLIARWALKKWKSGEDE 115

[Close]

BLAST of PI0005801 vs. ExPASy TrEMBL
Match: A0A6J1J8Z1 (uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.1e-14
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 169 NPQKVGDYQKKEEINPPKKPDVVTIPAPEVVPPPPLKAMFNHHPGKFVHPSIRWPLFALG 228
           N  K GD +++    PP+KP+VVT+P  EV PPPPL A     PGKF HP+IRW L+ALG
Sbjct: 21  NRDKSGDNEEEPSPMPPQKPNVVTLPGSEVAPPPPLAAECK-RPGKFSHPAIRWSLYALG 80

Query: 229 GYLIIRWAWKKWRPDDDD 247
           G++I RWA K+W+  +D+
Sbjct: 81  GFIIARWALKRWKSGEDE 97

[Close]

BLAST of PI0005801 vs. ExPASy TrEMBL
Match: A0A6A4RYB7 (Uncharacterized protein OS=Scophthalmus maximus OX=52904 GN=F2P81_023122 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 42/171 (24.56%), Postives = 101/171 (59.06%), Query Frame = 0


Query: 17  SVLKNQQKVGDYQQKVGDYQQKLGKISRKLGEISRTLGIISRKLGKISLKLGKISRNWGK 76
           ++ K++Q++ +Y QK+ +Y+ K+ +   K+ E  + +    +K+ +  LK+ +  +   +
Sbjct: 365 TISKHEQEISEYDQKISEYELKISEYELKISEYDQKISEYEQKISEYELKISEYDQKISE 424

Query: 77  SAES-WENQQKVGDYQQKVGDHPQNVGDYHQNVGDYHQKV-DYHQNV-DYHRNVGDYHQN 136
             +   E  QK+ +Y+QK+ ++ Q + +Y Q + +Y QK+ +Y Q + +Y + + +Y Q 
Sbjct: 425 YEQKISEYDQKISEYEQKISEYEQKISEYDQKISEYEQKISEYDQKISEYDQKISEYEQK 484

Query: 137 VNVEDYHQNVGDYHQNVN-----VGDYHQNVGDYQQKVADNPQKVGDYQKK 180
           ++  +Y Q + +Y Q ++     + +Y Q + +Y+QK+++  QK+ +Y++K
Sbjct: 485 IS--EYEQKISEYDQKISEYDQKISEYEQKISEYEQKISEYDQKISEYEQK 533

[Close]

BLAST of PI0005801 vs. NCBI nr
Match: XP_008446792.1 (PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-20
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 168 DNPQKVGDYQKKEEINPPKKPDVVTIPAPEVVPPPPLKAMFNHHPGKFVHPSIRWPLFAL 227
           +N QKV D QKKEE NPP+KPDVVTIPA  VV PPP+KA F   PGKF HP++ WPL AL
Sbjct: 21  NNRQKVVD-QKKEETNPPEKPDVVTIPASGVVSPPPVKAEFK-FPGKFSHPAVLWPLSAL 80

Query: 228 GGYLIIRWAWKKWRPDDDD 247
           GG+LII WAW+KWRPDDD+
Sbjct: 81  GGFLIIWWAWQKWRPDDDE 97

[Close]

BLAST of PI0005801 vs. NCBI nr
Match: XP_011655848.1 (uncharacterized protein LOC101213355 [Cucumis sativus] >KGN52215.1 hypothetical protein Csa_008804 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 7.4e-18
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 166 VADNPQKVGDY-QKKEEIN-PPKKPDVVTIPAPEVVPPPPLKAMFNHHPGKFVHPSIRWP 225
           V +N QK+ +  QKKEEIN P  K +VVTIPAPEVVPPPP+KA   HH GKF HP+I W 
Sbjct: 18  VRNNRQKLNNVDQKKEEINLPETKSEVVTIPAPEVVPPPPIKAEIKHH-GKFSHPAIVWS 77

Query: 226 LFALGGYLIIRWAWKKWRPDDDD 247
           L ALGG+ II++AWKKW+P DD+
Sbjct: 78  LCALGGFFIIKFAWKKWKPKDDE 99

[Close]

BLAST of PI0005801 vs. NCBI nr
Match: KAG6601203.1 (hypothetical protein SDJN03_06436, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.4 bits (228), Expect = 5.9e-15
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 169 NPQKVGDYQKKEEINPPKKPDVVTIPAPEVVPPPPLKAMFNHHPGKFVHPSIRWPLFALG 228
           N  K+GD Q++    PP+KP++VT+P  EV PPPPL A     PGKF HP+IRWPL+ALG
Sbjct: 39  NLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTAECK-RPGKFSHPAIRWPLYALG 98

Query: 229 GYLIIRWAWKKWRPDDDD 247
           G+LI RWA KKW+  +D+
Sbjct: 99  GFLIARWALKKWKSGEDE 115

[Close]

BLAST of PI0005801 vs. NCBI nr
Match: KAG7031999.1 (hypothetical protein SDJN02_06041, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.4 bits (228), Expect = 5.9e-15
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 169 NPQKVGDYQKKEEINPPKKPDVVTIPAPEVVPPPPLKAMFNHHPGKFVHPSIRWPLFALG 228
           N  K+GD Q++    PP+KP++VT+P  EV PPPPL A     PGKF HP+IRWPL+ALG
Sbjct: 23  NLNKLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTAECK-RPGKFSHPAIRWPLYALG 82

Query: 229 GYLIIRWAWKKWRPDDDD 247
           G+LI RWA KKW+  +D+
Sbjct: 83  GFLIARWALKKWKSGEDE 99

[Close]

BLAST of PI0005801 vs. NCBI nr
Match: XP_022957161.1 (uncharacterized protein LOC111458630 [Cucurbita moschata])

HSP 1 Score: 92.0 bits (227), Expect = 7.7e-15
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 169 NPQKVGDYQKKEEINPPKKPDVVTIPAPEVVPPPPLKAMFNHHPGKFVHPSIRWPLFALG 228
           N  K+GD +++    PP+KP++VT+P  EV PPPPL A     PGKF HP+IRWPL+ALG
Sbjct: 39  NLNKLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTAECK-RPGKFSHPAIRWPLYALG 98

Query: 229 GYLIIRWAWKKWRPDDDD 247
           G+LI RWA KKW+  +D+
Sbjct: 99  GFLIARWALKKWKSGEDE 115

The following BLAST results are available for this feature:

BLAST of PI0005801 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BGK5	5.9e-21	70.89	uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=...	[more]
A0A0A0KRF3	3.6e-18	63.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G616350 PE=4 SV=1	[more]
A0A6J1GYG5	3.7e-15	55.13	uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]
A0A6J1J8Z1	9.1e-14	52.56	uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672...	[more]
A0A6A4RYB7	1.7e-12	24.56	Uncharacterized protein OS=Scophthalmus maximus OX=52904 GN=F2P81_023122 PE=4 SV...	[more]

BLAST of PI0005801 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446792.1	1.2e-20	70.89	PREDICTED: uncharacterized protein LOC103489415 [Cucumis melo]	[more]
XP_011655848.1	7.4e-18	63.86	uncharacterized protein LOC101213355 [Cucumis sativus] >KGN52215.1 hypothetical ...	[more]
KAG6601203.1	5.9e-15	56.41	hypothetical protein SDJN03_06436, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031999.1	5.9e-15	56.41	hypothetical protein SDJN02_06041, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022957161.1	7.7e-15	55.13	uncharacterized protein LOC111458630 [Cucurbita moschata]	[more]

BLAST of PI0005801 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 10..189 e-value: 8.7E-8 score: 33.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR36374	OS01G0969000 PROTEIN	coord: 165..247
None	No IPR available	PANTHER	PTHR36374:SF1	OS01G0969000 PROTEIN	coord: 165..247
None	No IPR available	SUPERFAMILY	57997	Tropomyosin	coord: 12..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005801.1	PI0005801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding